Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 7

1.

DREAM-Yara: an exact read mapper for very large databases with short update time.

Dadi TH, Siragusa E, Piro VC, Andrusch A, Seiler E, Renard BY, Reinert K.

Bioinformatics. 2018 Sep 1;34(17):i766-i772. doi: 10.1093/bioinformatics/bty567.

PMID:
30423080
2.

Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.

Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, Fritz A, Garrido-Oter R, Jørgensen TS, Shapiro N, Blood PD, Gurevich A, Bai Y, Turaev D, DeMaere MZ, Chikhi R, Nagarajan N, Quince C, Meyer F, Balvočiūtė M, Hansen LH, Sørensen SJ, Chia BKH, Denis B, Froula JL, Wang Z, Egan R, Don Kang D, Cook JJ, Deltel C, Beckstette M, Lemaitre C, Peterlongo P, Rizk G, Lavenier D, Wu YW, Singer SW, Jain C, Strous M, Klingenberg H, Meinicke P, Barton MD, Lingner T, Lin HH, Liao YC, Silva GGZ, Cuevas DA, Edwards RA, Saha S, Piro VC, Renard BY, Pop M, Klenk HP, Göker M, Kyrpides NC, Woyke T, Vorholt JA, Schulze-Lefert P, Rubin EM, Darling AE, Rattei T, McHardy AC.

Nat Methods. 2017 Nov;14(11):1063-1071. doi: 10.1038/nmeth.4458. Epub 2017 Oct 2.

3.

MetaMeta: integrating metagenome analysis tools to improve taxonomic profiling.

Piro VC, Matschkowski M, Renard BY.

Microbiome. 2017 Aug 14;5(1):101. doi: 10.1186/s40168-017-0318-y.

4.

DUDes: a top-down taxonomic profiler for metagenomics.

Piro VC, Lindner MS, Renard BY.

Bioinformatics. 2016 Aug 1;32(15):2272-80. doi: 10.1093/bioinformatics/btw150. Epub 2016 Mar 24.

PMID:
27153591
5.

SuRankCo: supervised ranking of contigs in de novo assemblies.

Kuhring M, Dabrowski PW, Piro VC, Nitsche A, Renard BY.

BMC Bioinformatics. 2015 Jul 30;16:240. doi: 10.1186/s12859-015-0644-7.

6.

FGAP: an automated gap closing tool.

Piro VC, Faoro H, Weiss VA, Steffens MB, Pedrosa FO, Souza EM, Raittz RT.

BMC Res Notes. 2014 Jun 18;7:371. doi: 10.1186/1756-0500-7-371.

7.

Draft Genome Sequence of Herbaspirillum huttiense subsp. putei IAM 15032, a Strain Isolated from Well Water.

de Souza V, Piro VC, Faoro H, Tadra-Sfeir MZ, Chicora VK, Guizelini D, Weiss V, Vialle RA, Monteiro RA, Steffens MB, Marchaukoski JN, Pedrosa FO, Cruz LM, Chubatsu LS, Raittz RT.

Genome Announc. 2013 Jan;1(1). pii: e00252-12. doi: 10.1128/genomeA.00252-12. Epub 2013 Feb 21.

Supplemental Content

Support Center