PubMed

Pires JCM.

Sci Total Environ. 2019 Jul 1;672:502-514. doi: 10.1016/j.scitotenv.2019.04.004. Epub 2019 Apr 2. Review.

Wilhelmsson PKI, Chandler JO, Fernandez-Pozo N, Graeber K, Ullrich KK, Arshad W, Khan S, Hofberger JA, Buchta K, Edger PP, Pires JC, Schranz ME, Leubner-Metzger G, Rensing SA.

BMC Genomics. 2019 Jan 30;20(1):95. doi: 10.1186/s12864-019-5452-4.

Smith SD, Angelovici R, Heyduk K, Maeda HA, Moghe GD, Pires JC, Widhalm JR, Wisecaver JH.

Am J Bot. 2019 Jan;106(1):3-13. doi: 10.1002/ajb2.1216. Epub 2019 Jan 10. No abstract available.

Santos FM, Gómez-Losada Á, Pires JCM.

J Hazard Mater. 2019 Mar 5;365:632-641. doi: 10.1016/j.jhazmat.2018.11.061. Epub 2018 Nov 16.

Santos FM, Pires JCM.

Bioresour Technol. 2018 Nov;267:725-731. doi: 10.1016/j.biortech.2018.07.119. Epub 2018 Jul 25. Review.

Gómez-Losada Á, Pires JCM, Pino-Mejías R.

Environ Model Softw. 2018 Aug;106:13-21. doi: 10.1016/j.envsoft.2018.02.011.

Li M, An H, Angelovici R, Bagaza C, Batushansky A, Clark L, Coneva V, Donoghue MJ, Edwards E, Fajardo D, Fang H, Frank MH, Gallaher T, Gebken S, Hill T, Jansky S, Kaur B, Klahs PC, Klein LL, Kuraparthy V, Londo J, Migicovsky Z, Miller A, Mohn R, Myles S, Otoni WC, Pires JC, Rieffer E, Schmerler S, Spriggs E, Topp CN, Van Deynze A, Zhang K, Zhu L, Zink BM, Chitwood DH.

Front Plant Sci. 2018 Apr 25;9:553. doi: 10.3389/fpls.2018.00553. eCollection 2018.

Van de Peer Y, Pires JC.

Curr Opin Plant Biol. 2018 Apr;42:iii-v. doi: 10.1016/j.pbi.2018.04.015. Epub 2018 May 8. No abstract available.

Washburn JD, Schnable JC, Conant GC, Brutnell TP, Shao Y, Zhang Y, Ludwig M, Davidse G, Pires JC.

Sci Rep. 2018 May 2;8(1):7120. doi: 10.1038/s41598-018-25620-4.

Hao Y, Washburn JD, Rosenthal J, Nielsen B, Lyons E, Edger PP, Pires JC, Conant GC.

Genome Biol Evol. 2018 Mar 1;10(3):999-1011. doi: 10.1093/gbe/evy061.

Unruh SA, McKain MR, Lee YI, Yukawa T, McCormick MK, Shefferson RP, Smithson A, Leebens-Mack JH, Pires JC.

Am J Bot. 2018 Apr;105(4):631-640. doi: 10.1002/ajb2.1047. Epub 2018 Apr 2. Erratum in: Am J Bot. 2018 May;105(5):957.

Emery M, Willis MMS, Hao Y, Barry K, Oakgrove K, Peng Y, Schmutz J, Lyons E, Pires JC, Edger PP, Conant GC.

PLoS Genet. 2018 Mar 28;14(3):e1007267. doi: 10.1371/journal.pgen.1007267. eCollection 2018 Mar.

Edger PP, Hall JC, Harkess A, Tang M, Coombs J, Mohammadin S, Schranz ME, Xiong Z, Leebens-Mack J, Meyers BC, Sytsma KJ, Koch MA, Al-Shehbaz IA, Pires JC.

Am J Bot. 2018 Mar;105(3):463-469. doi: 10.1002/ajb2.1040. Epub 2018 Mar 25.

Wang J, Cappa JJ, Harris JP, Edger PP, Zhou W, Pires JC, Adair M, Unruh SA, Simmons MP, Schiavon M, Pilon-Smits EAH.

Plant Biotechnol J. 2018 Feb 7. doi: 10.1111/pbi.12897. [Epub ahead of print]

Hurgobin B, Golicz AA, Bayer PE, Chan CK, Tirnaz S, Dolatabadian A, Schiessl SV, Samans B, Montenegro JD, Parkin IAP, Pires JC, Chalhoub B, King GJ, Snowdon R, Batley J, Edwards D.

Plant Biotechnol J. 2018 Jul;16(7):1265-1274. doi: 10.1111/pbi.12867. Epub 2018 Jan 10.

Cañon-Montañez W, Santos ABS, Nunes LA, Pires JCG, Freire CMV, Ribeiro ALP, Mill JG, Bessel M, Duncan BB, Schmidt MI, Foppa M.

Rev Esp Cardiol (Engl Ed). 2018 Jul;71(7):524-530. doi: 10.1016/j.rec.2017.10.008. Epub 2017 Nov 14. English, Spanish.

Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y, Luo S, Chen H, Gao J, Mao Z, Pires JC, Luo M, Kudrna D, Wing RA, Meyers BC, Yi K, Kong H, Lavrijsen P, Sunseri F, Falavigna A, Ye Y, Leebens-Mack JH, Chen G.

Nat Commun. 2017 Nov 2;8(1):1279. doi: 10.1038/s41467-017-01064-8.

Washburn JD, Schnable JC, Conant GC, Brutnell TP, Shao Y, Zhang Y, Ludwig M, Davidse G, Pires JC.

Sci Rep. 2017 Oct 19;7(1):13528. doi: 10.1038/s41598-017-13236-z. Erratum in: Sci Rep. 2018 May 2;8(1):7120.

Lopez L, Wolf EM, Pires JC, Edger PP, Koch MA.

Front Plant Sci. 2017 Aug 29;8:1488. doi: 10.3389/fpls.2017.01488. eCollection 2017.

Edger PP, Smith R, McKain MR, Cooley AM, Vallejo-Marin M, Yuan Y, Bewick AJ, Ji L, Platts AE, Bowman MJ, Childs KL, Washburn JD, Schmitz RJ, Smith GD, Pires JC, Puzey JR.

Plant Cell. 2017 Sep;29(9):2150-2167. doi: 10.1105/tpc.17.00010. Epub 2017 Aug 16.

Mohammadin S, Peterse K, van de Kerke SJ, Chatrou LW, Dönmez AA, Mummenhoff K, Pires JC, Edger PP, Al-Shehbaz IA, Schranz ME.

Am J Bot. 2017 Jul;104(7):1042-1054. doi: 10.3732/ajb.1700091.

Johnson KL, Cassin AM, Lonsdale A, Wong GK, Soltis DE, Miles NW, Melkonian M, Melkonian B, Deyholos MK, Leebens-Mack J, Rothfels CJ, Stevenson DW, Graham SW, Wang X, Wu S, Pires JC, Edger PP, Carpenter EJ, Bacic A, Doblin MS, Schultz CJ.

Plant Physiol. 2017 Jun;174(2):904-921. doi: 10.1104/pp.17.00295. Epub 2017 Apr 26.

Bird KA, An H, Gazave E, Gore MA, Pires JC, Robertson LD, Labate JA.

Front Plant Sci. 2017 Mar 13;8:321. doi: 10.3389/fpls.2017.00321. eCollection 2017.

Pereira SF, Gonçalves AL, Moreira FC, Silva TF, Vilar VJ, Pires JC.

Int J Mol Sci. 2016 Nov 17;17(11). pii: E1926.

Golicz AA, Bayer PE, Barker GC, Edger PP, Kim H, Martinez PA, Chan CK, Severn-Ellis A, McCombie WR, Parkin IA, Paterson AH, Pires JC, Sharpe AG, Tang H, Teakle GR, Town CD, Batley J, Edwards D.

Nat Commun. 2016 Nov 11;7:13390. doi: 10.1038/ncomms13390.

McKain MR, McNeal JR, Kellar PR, Eguiarte LE, Pires JC, Leebens-Mack J.

Am J Bot. 2016 Oct;103(10):1717-1729. Epub 2016 Oct 20.

Bourque S, Jeandroz S, Grandperret V, Lehotai N, Aimé S, Soltis DE, Miles NW, Melkonian M, Deyholos MK, Leebens-Mack JH, Chase MW, Rothfels CJ, Stevenson DW, Graham SW, Wang X, Wu S, Pires JC, Edger PP, Yan Z, Xie Y, Carpenter EJ, Wong GKS, Wendehenne D, Nicolas-Francès V.

Trends Plant Sci. 2016 Dec;21(12):1008-1016. doi: 10.1016/j.tplants.2016.10.001. Epub 2016 Oct 24. Review.

Hackenberg D, McKain MR, Lee SG, Roy Choudhury S, McCann T, Schreier S, Harkess A, Pires JC, Wong GK, Jez JM, Kellogg EA, Pandey S.

New Phytol. 2017 Oct;216(2):562-575. doi: 10.1111/nph.14180. Epub 2016 Sep 16. Erratum in: New Phytol. 2018 Jan;217(2):960.

Pires JC, Conant GC.

Annu Rev Genet. 2016 Nov 23;50:113-131. Epub 2016 Sep 12. Review.

Barker MS, Husband BC, Pires JC.

Am J Bot. 2016 Jul;103(7):1139-45. doi: 10.3732/ajb.1600272. Epub 2016 Aug 1. No abstract available.

Harkess A, Mercati F, Abbate L, McKain M, Pires JC, Sala T, Sunseri F, Falavigna A, Leebens-Mack J.

G3 (Bethesda). 2016 Sep 8;6(9):2679-85. doi: 10.1534/g3.116.030239.

Burke SV, Wysocki WP, Zuloaga FO, Craine JM, Pires JC, Edger PP, Mayfield-Jones D, Clark LG, Kelchner SA, Duvall MR.

BMC Plant Biol. 2016 Jun 18;16(1):140. doi: 10.1186/s12870-016-0823-3.

Lane TS, Rempe CS, Davitt J, Staton ME, Peng Y, Soltis DE, Melkonian M, Deyholos M, Leebens-Mack JH, Chase M, Rothfels CJ, Stevenson D, Graham SW, Yu J, Liu T, Pires JC, Edger PP, Zhang Y, Xie Y, Zhu Y, Carpenter E, Wong GK, Stewart CN Jr.

BMC Biotechnol. 2016 May 31;16(1):47. doi: 10.1186/s12896-016-0277-6.

Van de Peer Y, Pires JC.

Curr Opin Plant Biol. 2016 Apr;30:iv-vi. doi: 10.1016/j.pbi.2016.03.010. Epub 2016 Apr 1. No abstract available.

Momany M, Di Pietro A, Alexander WG, Barker BM, Harb OS, Kamoun S, Martin F, Pires JC, Stajich JE, Thomma BP, Unruh S.

G3 (Bethesda). 2015 Dec;5(12):2523-5. No abstract available.

Moreira D, Pires JCM.

Bioresour Technol. 2016 Sep;215:371-379. doi: 10.1016/j.biortech.2016.03.060. Epub 2016 Mar 14.

McKain MR, Tang H, McNeal JR, Ayyampalayam S, Davis JI, dePamphilis CW, Givnish TJ, Pires JC, Stevenson DW, Leebens-Mack JH.

Genome Biol Evol. 2016 Apr 21;8(4):1150-64. doi: 10.1093/gbe/evw060.

Honaas LA, Wafula EK, Wickett NJ, Der JP, Zhang Y, Edger PP, Altman NS, Pires JC, Leebens-Mack JH, dePamphilis CW.

PLoS One. 2016 Jan 5;11(1):e0146062. doi: 10.1371/journal.pone.0146062. eCollection 2016.

Graeff DB, Foppa M, Pires JC, Vigo A, Schmidt MI, Lotufo PA, Mill JG, Duncan BB.

Int J Cardiovasc Imaging. 2016 Apr;32(4):563-72. doi: 10.1007/s10554-015-0810-z. Epub 2015 Nov 19.

Huang CH, Sun R, Hu Y, Zeng L, Zhang N, Cai L, Zhang Q, Koch MA, Al-Shehbaz I, Edger PP, Pires JC, Tan DY, Zhong Y, Ma H.

Mol Biol Evol. 2016 Feb;33(2):394-412. doi: 10.1093/molbev/msv226. Epub 2015 Oct 29.

Gonçalves AL, Pires JC, Simões M.

Bioresour Technol. 2016 Jan;200:279-86. doi: 10.1016/j.biortech.2015.10.023. Epub 2015 Oct 20.

Taxis TM, Wolff S, Gregg SJ, Minton NO, Zhang C, Dai J, Schnabel RD, Taylor JF, Kerley MS, Pires JC, Lamberson WR, Conant GC.

Nucleic Acids Res. 2015 Nov 16;43(20):9600-12. doi: 10.1093/nar/gkv973. Epub 2015 Sep 29.

Washburn JD, Schnable JC, Davidse G, Pires JC.

Am J Bot. 2015 Sep;102(9):1493-505. doi: 10.3732/ajb.1500222. Epub 2015 Sep 15.

Mohammadin S, Edger PP, Pires JC, Schranz ME.

BMC Plant Biol. 2015 Sep 11;15:217. doi: 10.1186/s12870-015-0603-5.

Barrett CF, Baker WJ, Comer JR, Conran JG, Lahmeyer SC, Leebens-Mack JH, Li J, Lim GS, Mayfield-Jones DR, Perez L, Medina J, Pires JC, Santos C, Wm Stevenson D, Zomlefer WB, Davis JI.

New Phytol. 2016 Jan;209(2):855-70. doi: 10.1111/nph.13617. Epub 2015 Sep 9.

Kellar PR, Ahrendsen DL, Aust SK, Jones AR, Pires JC.

Appl Plant Sci. 2015 Jul 7;3(7). pii: apps.1400108. doi: 10.3732/apps.1400108. eCollection 2015 Jul.

Cotton JL, Wysocki WP, Clark LG, Kelchner SA, Pires JC, Edger PP, Mayfield-Jones D, Duvall MR.

BMC Plant Biol. 2015 Jul 11;15:178. doi: 10.1186/s12870-015-0563-9.

Edger PP, Heidel-Fischer HM, Bekaert M, Rota J, Glöckner G, Platts AE, Heckel DG, Der JP, Wafula EK, Tang M, Hofberger JA, Smithson A, Hall JC, Blanchette M, Bureau TE, Wright SI, dePamphilis CW, Eric Schranz M, Barker MS, Conant GC, Wahlberg N, Vogel H, Pires JC, Wheat CW.

Proc Natl Acad Sci U S A. 2015 Jul 7;112(27):8362-6. doi: 10.1073/pnas.1503926112. Epub 2015 Jun 22.

Norup MF, Petersen G, Burrows S, Bouchenak-Khelladi Y, Leebens-Mack J, Pires JC, Linder HP, Seberg O.

Mol Phylogenet Evol. 2015 Nov;92:25-44. doi: 10.1016/j.ympev.2015.06.002. Epub 2015 Jun 14.

Saarela JM, Wysocki WP, Barrett CF, Soreng RJ, Davis JI, Clark LG, Kelchner SA, Pires JC, Edger PP, Mayfield DR, Duvall MR.

AoB Plants. 2015 May 4;7. pii: plv046. doi: 10.1093/aobpla/plv046.