Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 92


Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted HIV-1 Drug Resistance in a Large U.S. Clinic Population.

Rhee SY, Clutter D, Fessel WJ, Klein D, Slome S, Pinsky BA, Marcus JL, Hurley L, Silverberg MJ, Kosakovsky Pond SL, Shafer RW.

Clin Infect Dis. 2018 May 26. doi: 10.1093/cid/ciy453. [Epub ahead of print]


Comparison of an In Vitro Diagnostic Next-Generation Sequencing Assay with Sanger Sequencing for HIV-1 Genotypic Resistance Testing.

Tzou PL, Ariyaratne P, Varghese V, Lee C, Rakhmanaliev E, Villy C, Yee M, Tan K, Michel G, Pinsky BA, Shafer RW.

J Clin Microbiol. 2018 May 25;56(6). pii: e00105-18. doi: 10.1128/JCM.00105-18. Print 2018 Jun.


Internally Controlled, Multiplex Real-Time Reverse Transcription PCR for Dengue Virus and Yellow Fever Virus Detection.

Rojas A, Diagne CT, Stittleburg VD, Mohamed-Hadley A, de Guillén YA, Balmaseda A, Faye O, Faye O, Sall AA, Harris E, Pinsky BA, Waggoner JJ.

Am J Trop Med Hyg. 2018 Jun;98(6):1833-1836. doi: 10.4269/ajtmh.18-0024. Epub 2018 Mar 29.


Poor immunogenicity, not vaccine strain egg adaptation, may explain the low H3N2 influenza vaccine effectiveness in 2012-13.

Cobey S, Gouma S, Parkhouse K, Chambers BS, Ertl HC, Schmader KE, Halpin RA, Lin X, Stockwell TB, Das SR, Landon E, Tesic V, Youngster I, Pinsky BA, Wentworth DE, Hensley SE, Grad YH.

Clin Infect Dis. 2018 Feb 20. doi: 10.1093/cid/ciy097. [Epub ahead of print]


High human herpesvirus 6 viral load in pediatric allogeneic hematopoietic stem cell transplant patients is associated with detection in end organs and high mortality.

Winestone LE, Punn R, Tamaresis JS, Buckingham J, Pinsky BA, Waggoner JJ, Kharbanda S.

Pediatr Transplant. 2018 Mar;22(2). doi: 10.1111/petr.13084. Epub 2017 Nov 27.


Closing the Brief Case: Confirmed Positive HIV-1 Serological Screening but Undetectable RNA Virus Load in a Pregnant Woman.

Joshi RP, Gomez CA, Steiner D, Aziz N, Pinsky BA.

J Clin Microbiol. 2017 Dec;55(12):3566-3567. doi: 10.1128/JCM.00619-17. No abstract available.


The Brief Case: Confirmed Positive HIV-1 Serologic Screening but Undetectable RNA Virus Load in a Pregnant Woman.

Joshi RP, Gomez CA, Steiner D, Aziz N, Pinsky BA.

J Clin Microbiol. 2017 Dec;55(12):3316-3320. doi: 10.1128/JCM.00618-17. No abstract available.


Real-time RT-PCR for Mayaro virus detection in plasma and urine.

Waggoner JJ, Rojas A, Mohamed-Hadley A, de Guillén YA, Pinsky BA.

J Clin Virol. 2018 Jan;98:1-4. doi: 10.1016/j.jcv.2017.11.006. Epub 2017 Nov 21.


Zika and Chikungunya virus detection in naturally infected Aedes aegypti in Ecuador.

Cevallos V, Ponce P, Waggoner JJ, Pinsky BA, Coloma J, Quiroga C, Morales D, Cárdenas MJ.

Acta Trop. 2018 Jan;177:74-80. doi: 10.1016/j.actatropica.2017.09.029. Epub 2017 Oct 2.


Characterization of Dengue Virus Infections Among Febrile Children Clinically Diagnosed With a Non-Dengue Illness, Managua, Nicaragua.

Waggoner JJ, Gresh L, Mohamed-Hadley A, Balmaseda A, Soda KJ, Abeynayake J, Sahoo MK, Liu Y, Kuan G, Harris E, Pinsky BA.

J Infect Dis. 2017 Jun 15;215(12):1816-1823. doi: 10.1093/infdis/jix195.


Prevalence of Drug-Resistant Minority Variants in Untreated HIV-1-Infected Individuals With and Those Without Transmitted Drug Resistance Detected by Sanger Sequencing.

Clutter DS, Zhou S, Varghese V, Rhee SY, Pinsky BA, Jeffrey Fessel W, Klein DB, Spielvogel E, Holmes SP, Hurley LB, Silverberg MJ, Swanstrom R, Shafer RW.

J Infect Dis. 2017 Aug 1;216(3):387-391. doi: 10.1093/infdis/jix338.


The Human Virome: Implications for Clinical Practice in Transplantation Medicine.

Tan SK, Relman DA, Pinsky BA.

J Clin Microbiol. 2017 Oct;55(10):2884-2893. doi: 10.1128/JCM.00489-17. Epub 2017 Jul 19. Review.


Development of a Real-Time Reverse Transcription Polymerase Chain Reaction for O'nyong-nyong Virus and Evaluation with Clinical and Mosquito Specimens from Kenya.

Waggoner J, Heath CJ, Ndenga B, Mutuku F, Sahoo MK, Mohamed-Hadley A, Vulule J, Mukoko D, Desiree LaBeaud A, Pinsky BA.

Am J Trop Med Hyg. 2017 Jul;97(1):121-124. doi: 10.4269/ajtmh.17-0027.


Malaria and Chikungunya Detected Using Molecular Diagnostics Among Febrile Kenyan Children.

Waggoner J, Brichard J, Mutuku F, Ndenga B, Heath CJ, Mohamed-Hadley A, Sahoo MK, Vulule J, Lefterova M, Banaei N, Mukoko D, Pinsky BA, LaBeaud AD.

Open Forum Infect Dis. 2017 May 29;4(3):ofx110. doi: 10.1093/ofid/ofx110. eCollection 2017 Summer.


Delayed Diagnosis of Tuberculous Meningitis Misdiagnosed as Herpes Simplex Virus-1 Encephalitis With the FilmArray Syndromic Polymerase Chain Reaction Panel.

Gomez CA, Pinsky BA, Liu A, Banaei N.

Open Forum Infect Dis. 2016 Dec 7;4(1):ofw245. doi: 10.1093/ofid/ofw245. eCollection 2017 Winter.


Metagenomic DNA Sequencing for the Diagnosis of Intraocular Infections.

Doan T, Acharya NR, Pinsky BA, Sahoo MK, Chow ED, Banaei N, Budvytiene I, Cevallos V, Zhong L, Zhou Z, Lietman TM, DeRisi JL.

Ophthalmology. 2017 Aug;124(8):1247-1248. doi: 10.1016/j.ophtha.2017.03.045. Epub 2017 May 16. No abstract available.


Stability of Zika virus in urine: Specimen processing considerations and implications for the detection of RNA targets in urine.

Tan SK, Sahoo MK, Milligan SB, Taylor N, Pinsky BA.

J Virol Methods. 2017 Oct;248:66-70. doi: 10.1016/j.jviromet.2017.04.018. Epub 2017 May 1.


Detection of Emerging Vaccine-Related Polioviruses by Deep Sequencing.

Sahoo MK, Holubar M, Huang C, Mohamed-Hadley A, Liu Y, Waggoner JJ, Troy SB, Garcia-Garcia L, Ferreyra-Reyes L, Maldonado Y, Pinsky BA.

J Clin Microbiol. 2017 Jul;55(7):2162-2171. doi: 10.1128/JCM.00144-17. Epub 2017 May 3.


Pericardial Effusion Following Hematopoietic Cell Transplantation in Children and Young Adults Is Associated with Increased Risk of Mortality.

Cox K, Punn R, Weiskopf E, Pinsky BA, Kharbanda S.

Biol Blood Marrow Transplant. 2017 Jul;23(7):1165-1169. doi: 10.1016/j.bbmt.2017.03.028. Epub 2017 Apr 5.


Current State of PCR-Based Epstein-Barr Virus DNA Testing for Nasopharyngeal Cancer.

Kim KY, Le QT, Yom SS, Pinsky BA, Bratman SV, Ng RH, El Mubarak HS, Chan KC, Sander M, Conley BA.

J Natl Cancer Inst. 2017 Apr 1;109(4). doi: 10.1093/jnci/djx007.


Diagnosis of Zika virus infection on a nanotechnology platform.

Zhang B, Pinsky BA, Ananta JS, Zhao S, Arulkumar S, Wan H, Sahoo MK, Abeynayake J, Waggoner JJ, Hopes C, Tang M, Dai H.

Nat Med. 2017 May;23(5):548-550. doi: 10.1038/nm.4302. Epub 2017 Mar 6.


Cytomegalovirus-Responsive CD8+ T Cells Expand After Solid Organ Transplantation in the Absence of CMV Disease.

Higdon LE, Trofe-Clark J, Liu S, Margulies KB, Sahoo MK, Blumberg E, Pinsky BA, Maltzman JS.

Am J Transplant. 2017 Aug;17(8):2045-2054. doi: 10.1111/ajt.14227. Epub 2017 Mar 13.


IgG antibodies to dengue enhanced for FcγRIIIA binding determine disease severity.

Wang TT, Sewatanon J, Memoli MJ, Wrammert J, Bournazos S, Bhaumik SK, Pinsky BA, Chokephaibulkit K, Onlamoon N, Pattanapanyasat K, Taubenberger JK, Ahmed R, Ravetch JV.

Science. 2017 Jan 27;355(6323):395-398. doi: 10.1126/science.aai8128.


Calibration of BK Virus Nucleic Acid Amplification Testing to the 1st WHO International Standard for BK Virus.

Tan SK, Milligan S, Sahoo MK, Taylor N, Pinsky BA.

J Clin Microbiol. 2017 Mar;55(3):923-930. doi: 10.1128/JCM.02315-16. Epub 2017 Jan 4.


Progress in Quantitative Viral Load Testing: Variability and Impact of the WHO Quantitative International Standards.

Hayden RT, Sun Y, Tang L, Procop GW, Hillyard DR, Pinsky BA, Young SA, Caliendo AM.

J Clin Microbiol. 2017 Feb;55(2):423-430. doi: 10.1128/JCM.02044-16. Epub 2016 Nov 16.


Current and future molecular diagnostics for ocular infectious diseases.

Doan T, Pinsky BA.

Curr Opin Ophthalmol. 2016 Nov;27(6):561-567. Review.


Viremia and Clinical Presentation in Nicaraguan Patients Infected With Zika Virus, Chikungunya Virus, and Dengue Virus.

Waggoner JJ, Gresh L, Vargas MJ, Ballesteros G, Tellez Y, Soda KJ, Sahoo MK, Nuñez A, Balmaseda A, Harris E, Pinsky BA.

Clin Infect Dis. 2016 Dec 15;63(12):1584-1590. Epub 2016 Aug 30.


Molecular diagnostics for human leptospirosis.

Waggoner JJ, Pinsky BA.

Curr Opin Infect Dis. 2016 Oct;29(5):440-5. doi: 10.1097/QCO.0000000000000295. Review.


Evaluation of the Aptima HIV-1 Quant Dx Assay Using Plasma and Dried Blood Spots.

Sahoo MK, Varghese V, White E, Winslow M, Katzenstein DA, Shafer RW, Pinsky BA.

J Clin Microbiol. 2016 Oct;54(10):2597-601. doi: 10.1128/JCM.01569-16. Epub 2016 Aug 17.


Zika Virus and Chikungunya Virus CoInfections: A Series of Three Cases from a Single Center in Ecuador.

Zambrano H, Waggoner JJ, Almeida C, Rivera L, Benjamin JQ, Pinsky BA.

Am J Trop Med Hyg. 2016 Oct 5;95(4):894-896. Epub 2016 Jul 11.


Clinical characteristics and outcomes of pediatric patients with CMV DNA detection in bronchoalveolar lavage fluid.

Burgener EB, Waggoner J, Pinsky BA, Chen SF.

Pediatr Pulmonol. 2017 Jan;52(1):112-118. doi: 10.1002/ppul.23494. Epub 2016 Jun 9.


Single-Reaction Multiplex Reverse Transcription PCR for Detection of Zika, Chikungunya, and Dengue Viruses.

Waggoner JJ, Gresh L, Mohamed-Hadley A, Ballesteros G, Davila MJ, Tellez Y, Sahoo MK, Balmaseda A, Harris E, Pinsky BA.

Emerg Infect Dis. 2016 Jul;22(7):1295-7. doi: 10.3201/eid2207.160326. Epub 2016 Jul 15.


Q148N, a Novel Integrase Inhibitor Resistance Mutation Associated with Low-Level Reduction in Elvitegravir Susceptibility.

Varghese V, Pinsky BA, Smith DS, Klein D, Shafer RW.

AIDS Res Hum Retroviruses. 2016 Jul;32(7):702-4. doi: 10.1089/AID.2016.0038. Epub 2016 Apr 19.


Clinical evaluation of a single-reaction real-time RT-PCR for pan-dengue and chikungunya virus detection.

Waggoner JJ, Ballesteros G, Gresh L, Mohamed-Hadley A, Tellez Y, Sahoo MK, Abeynayake J, Balmaseda A, Harris E, Pinsky BA.

J Clin Virol. 2016 May;78:57-61. doi: 10.1016/j.jcv.2016.01.007. Epub 2016 Feb 27.


Homotypic Dengue Virus Reinfections in Nicaraguan Children.

Waggoner JJ, Balmaseda A, Gresh L, Sahoo MK, Montoya M, Wang C, Abeynayake J, Kuan G, Pinsky BA, Harris E.

J Infect Dis. 2016 Oct 1;214(7):986-93. doi: 10.1093/infdis/jiw099. Epub 2016 Mar 16.


Zika Virus: Diagnostics for an Emerging Pandemic Threat.

Waggoner JJ, Pinsky BA.

J Clin Microbiol. 2016 Apr;54(4):860-7. doi: 10.1128/JCM.00279-16. Epub 2016 Feb 17. Review.


Molecular and Culture-Based Bronchoalveolar Lavage Fluid Testing for the Diagnosis of Cytomegalovirus Pneumonitis.

Tan SK, Burgener EB, Waggoner JJ, Gajurel K, Gonzalez S, Chen SF, Pinsky BA.

Open Forum Infect Dis. 2016 Feb 10;3(1):ofv212. doi: 10.1093/ofid/ofv212. eCollection 2016 Jan.


Correction: Analytical Performance Characteristics of the Cepheid GeneXpert Ebola Assay for the Detection of Ebola Virus.

Pinsky BA, Sahoo MK, Sandlund J, Kleman M, Kulkarni M, Grufman P, Nygren M, Kwiatkowski R, Baron EJ, Tenover F, Denison B, Higuchi R, Van Atta R, Beer NR, Carrillo AC, Naraghi-Arani P, Mire CE, Ranadheera C, Grolla A, Lagerqvist N, Persing DH.

PLoS One. 2015 Dec 21;10(12):e0145896. doi: 10.1371/journal.pone.0145896. eCollection 2015. No abstract available.


Analytical Performance Characteristics of the Cepheid GeneXpert Ebola Assay for the Detection of Ebola Virus.

Pinsky BA, Sahoo MK, Sandlund J, Kleman M, Kulkarni M, Grufman P, Nygren M, Kwiatkowski R, Baron EJ, Tenover F, Denison B, Higuchi R, Van Atta R, Beer NR, Carrillo AC, Naraghi-Arani P, Mire CE, Ranadheera C, Grolla A, Lagerqvist N, Persing DH.

PLoS One. 2015 Nov 12;10(11):e0142216. doi: 10.1371/journal.pone.0142216. eCollection 2015. Erratum in: PLoS One. 2015;10(12):e0145896.


Next-Generation Sequencing for Infectious Disease Diagnosis and Management: A Report of the Association for Molecular Pathology.

Lefterova MI, Suarez CJ, Banaei N, Pinsky BA.

J Mol Diagn. 2015 Nov;17(6):623-34. doi: 10.1016/j.jmoldx.2015.07.004. Epub 2015 Sep 30. Review.


Molecular Testing for Plasmodium falciparum by Use of Serum or Plasma and Comparison with Microscopy and Rapid Diagnostic Testing in Febrile Nigerian Patients.

Waggoner JJ, Okangba C, Mohamed-Hadley A, Lefterova MI, Banaei N, Oyibo W, Pinsky BA.

J Clin Microbiol. 2015 Nov;53(11):3596-600. doi: 10.1128/JCM.01876-15. Epub 2015 Sep 9.


Cytomegalovirus load at treatment initiation is predictive of time to resolution of viremia and duration of therapy in hematopoietic cell transplant recipients.

Tan SK, Waggoner JJ, Pinsky BA.

J Clin Virol. 2015 Aug;69:179-83. doi: 10.1016/j.jcv.2015.06.006. Epub 2015 Jun 10.


Limited Variation in BK Virus T-Cell Epitopes Revealed by Next-Generation Sequencing.

Sahoo MK, Tan SK, Chen SF, Kapusinszky B, Concepcion KR, Kjelson L, Mallempati K, Farina HM, Fernández-Viña M, Tyan D, Grimm PC, Anderson MW, Concepcion W, Pinsky BA.

J Clin Microbiol. 2015 Oct;53(10):3226-33. doi: 10.1128/JCM.01385-15. Epub 2015 Jul 22.


Reverse-Transcriptase PCR Detection of Leptospira: Absence of Agreement with Single-Specimen Microscopic Agglutination Testing.

Waggoner JJ, Balassiano I, Mohamed-Hadley A, Vital-Brazil JM, Sahoo MK, Pinsky BA.

PLoS One. 2015 Jul 15;10(7):e0132988. doi: 10.1371/journal.pone.0132988. eCollection 2015.


Molecular Detection of Leptospira in Two Returned Travelers: Higher Bacterial Load in Cerebrospinal Fluid Versus Serum or Plasma.

Waggoner JJ, Soda EA, Seibert R, Grant P, Pinsky BA.

Am J Trop Med Hyg. 2015 Aug;93(2):238-40. doi: 10.4269/ajtmh.15-0174. Epub 2015 Jun 1.


Fatal West Nile Virus Encephalitis in a Heart Transplant Recipient.

Gomez AJ, Waggoner JJ, Itoh M, Hollander SA, Gutierrez KM, Budvytiene I, Banaei N, Pinsky BA.

J Clin Microbiol. 2015 Aug;53(8):2749-52. doi: 10.1128/JCM.00834-15. Epub 2015 May 20.



Robilotti E, Deresinski S, Pinsky BA.

Clin Microbiol Rev. 2015 Jan;28(1):134-64. doi: 10.1128/CMR.00075-14. Review.


How great is the threat of chikungunya virus?

Waggoner JJ, Pinsky BA.

Expert Rev Anti Infect Ther. 2015 Mar;13(3):291-3. doi: 10.1586/14787210.2015.995634. Epub 2014 Dec 24.


Improved serotype-specific dengue virus detection in Trinidad and Tobago using a multiplex, real-time RT-PCR.

Waggoner JJ, Sahadeo NS, Brown A, Mohamed-Hadley A, Hadley D, Carrington L, Carrington CV, Pinsky BA.

Diagn Microbiol Infect Dis. 2015 Feb;81(2):105-6. doi: 10.1016/j.diagmicrobio.2014.10.001. Epub 2014 Oct 7.


Sensitive real-time PCR detection of pathogenic Leptospira spp. and a comparison of nucleic acid amplification methods for the diagnosis of leptospirosis.

Waggoner JJ, Balassiano I, Abeynayake J, Sahoo MK, Mohamed-Hadley A, Liu Y, Vital-Brazil JM, Pinsky BA.

PLoS One. 2014 Nov 7;9(11):e112356. doi: 10.1371/journal.pone.0112356. eCollection 2014.

Supplemental Content

Loading ...
Support Center