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Items: 1 to 50 of 118

1.

Real-time RT-PCR for the detection and quantitation of Oropouche virus.

Rojas A, Stittleburg V, Cardozo F, Bopp N, Cantero C, López S, Bernal C, Mendoza L, Aguilar P, Pinsky BA, Guillén Y, Páez M, Waggoner JJ.

Diagn Microbiol Infect Dis. 2019 Sep 9:114894. doi: 10.1016/j.diagmicrobio.2019.114894. [Epub ahead of print]

PMID:
31727377
2.

Comparison of Transcription-Mediated Amplification and Real-Time PCR Assays for Hepatitis B Virus DNA Quantitation in Serum.

Weber J, Sahoo MK, Taylor N, Uy E, Shi RZ, Pinsky BA.

J Appl Lab Med. 2019 Nov;4(3):383-390. doi: 10.1373/jalm.2019.029058. Epub 2019 Jun 6.

PMID:
31659075
3.

Characterization of dengue cases among patients with an acute illness, Central Department, Paraguay.

Rojas A, Cardozo F, Cantero C, Stittleburg V, López S, Bernal C, Gimenez Acosta FE, Mendoza L, Pinsky BA, Arévalo de Guillén I, Páez M, Waggoner J.

PeerJ. 2019 Oct 9;7:e7852. doi: 10.7717/peerj.7852. eCollection 2019.

4.

Metagenomic Next-Generation Sequencing for Identification and Quantitation of Transplant-Related DNA Viruses.

Carpenter ML, Tan SK, Watson T, Bacher R, Nagesh V, Watts A, Bentley G, Weber J, Huang C, Sahoo MK, Hinterwirth A, Doan T, Carter T, Dong Q, Gourguechon S, Harness E, Kermes S, Radhakrishnan S, Wang G, Quiroz-Zárate A, Ching J, Pinsky BA.

J Clin Microbiol. 2019 Nov 22;57(12). pii: e01113-19. doi: 10.1128/JCM.01113-19. Print 2019 Dec.

5.

Investigation of Preanalytical Variables Impacting Pathogen Cell-Free DNA in Blood and Urine.

Murugesan K, Hogan CA, Palmer Z, Reeve B, Theron G, Andama A, Somoskovi A, Steadman A, Madan D, Andrews J, Croda J, Sahoo MK, Cattamanchi A, Pinsky BA, Banaei N.

J Clin Microbiol. 2019 Oct 23;57(11). pii: e00782-19. doi: 10.1128/JCM.00782-19. Print 2019 Nov.

6.

Prospective Evaluation of the Vela Diagnostics Next-Generation Sequencing Platform for HIV-1 Genotypic Resistance Testing.

Weber J, Volkova I, Sahoo MK, Tzou PL, Shafer RW, Pinsky BA.

J Mol Diagn. 2019 Nov;21(6):961-970. doi: 10.1016/j.jmoldx.2019.06.003. Epub 2019 Aug 2.

PMID:
31382033
7.

Molecular profiling of clear cell adenocarcinoma of the urinary tract.

Lin CY, Saleem A, Stehr H, Zehnder JL, Pinsky BA, Kunder CA.

Virchows Arch. 2019 Dec;475(6):727-734. doi: 10.1007/s00428-019-02634-5. Epub 2019 Aug 2.

PMID:
31372739
8.

Risk prediction for severe disease and better diagnostic accuracy in early dengue infection; the Colombo dengue study.

Sigera PC, Amarasekara R, Rodrigo C, Rajapakse S, Weeratunga P, De Silva NL, Huang CH, Sahoo MK, Pinsky BA, Pillai DR, Tissera HA, Jayasinghe S, Handunnetti S, Fernando SD.

BMC Infect Dis. 2019 Aug 1;19(1):680. doi: 10.1186/s12879-019-4304-9.

9.

Extra-articular Metacarpal Fractures: Closed Reduction and Percutaneous Pinning Versus Open Reduction and Internal Fixation.

Vasilakis V, Sinnott CJ, Hamade M, Hamade H, Pinsky BA.

Plast Reconstr Surg Glob Open. 2019 May 21;7(5):e2261. doi: 10.1097/GOX.0000000000002261. eCollection 2019 May.

10.

Cost-Effective Respiratory Virus Testing.

Pinsky BA, Hayden RT.

J Clin Microbiol. 2019 Aug 26;57(9). pii: e00373-19. doi: 10.1128/JCM.00373-19. Print 2019 Sep. Review.

11.

Community-based self-collected human papillomavirus screening in rural Zimbabwe.

Fitzpatrick MB, El-Khatib Z, Katzenstein D, Pinsky BA, Chirenje ZM, McCarty K.

BMC Public Health. 2019 May 29;19(Suppl 1):603. doi: 10.1186/s12889-019-6810-5.

12.

Multiplex Solid-Phase Melt Curve Analysis for the Point-of-Care Detection of HIV-1 Drug Resistance.

Clutter DS, Mazarei G, Sinha R, Manasa J, Nouhin J, LaPrade E, Bolouki S, Tzou PL, Hannita-Hui J, Sahoo MK, Kuimelis P, Kuimelis RG, Pinsky BA, Schoolnik GK, Hassibi A, Shafer RW.

J Mol Diagn. 2019 Jul;21(4):580-592. doi: 10.1016/j.jmoldx.2019.02.005. Epub 2019 Apr 23.

PMID:
31026601
13.

Unbiased Pathogen Detection and Host Gene Profiling for Conjunctivitis.

Lalitha P, Seitzman GD, Kotecha R, Hinterwirth A, Chen C, Zhong L, Cummings S, Lebas E, Sahoo MK, Pinsky BA, Lietman TM, Doan T.

Ophthalmology. 2019 Aug;126(8):1090-1094. doi: 10.1016/j.ophtha.2019.03.039. Epub 2019 Apr 4.

PMID:
30953744
14.

Impact of Pretransplant Donor BK Viruria in Kidney Transplant Recipients.

Tan SK, Huang C, Sahoo MK, Weber J, Kurzer J, Stedman MR, Concepcion W, Gallo AE, Alonso D, Srinivas T, Storch GA, Subramanian AK, Tan JC, Pinsky BA.

J Infect Dis. 2019 Jul 2;220(3):370-376. doi: 10.1093/infdis/jiz114.

PMID:
30869132
15.

Persistence of Human Immunodeficiency Virus-1 Drug Resistance Mutations in Proviral Deoxyribonucleic Acid After Virologic Failure of Efavirenz-Containing Antiretroviral Regimens.

De La Cruz J, Vardhanbhuti S, Sahoo MK, Rovner R, Bosch RJ, Manasa J, Katzenstein DA, Pinsky BA.

Open Forum Infect Dis. 2019 Jan 16;6(3):ofz034. doi: 10.1093/ofid/ofz034. eCollection 2019 Mar.

16.

hrHPV prevalence and type distribution in rural Zimbabwe: A community-based self-collection study using near-point-of-care GeneXpert HPV testing.

Fitzpatrick MB, Dube Mandishora RS, Katzenstein DA, McCarty K, Weber J, Sahoo MK, Manasa J, Chirenje ZM, Pinsky BA.

Int J Infect Dis. 2019 May;82:21-29. doi: 10.1016/j.ijid.2019.02.022. Epub 2019 Feb 23.

17.

Evaluation of the Aptima HCV Quant Dx Assay Using Serum and Dried Blood Spots.

Weber J, Sahoo MK, Taylor N, Shi RZ, Pinsky BA.

J Clin Microbiol. 2019 Mar 28;57(4). pii: e00030-19. doi: 10.1128/JCM.00030-19. Print 2019 Apr.

18.

A 20-Gene Set Predictive of Progression to Severe Dengue.

Robinson M, Sweeney TE, Barouch-Bentov R, Sahoo MK, Kalesinskas L, Vallania F, Sanz AM, Ortiz-Lasso E, Albornoz LL, Rosso F, Montoya JG, Pinsky BA, Khatri P, Einav S.

Cell Rep. 2019 Jan 29;26(5):1104-1111.e4. doi: 10.1016/j.celrep.2019.01.033.

19.

Dual-target, real-time PCR for the diagnosis of intraocular Toxoplasma gondii infections.

Gomez CA, Sahoo MK, Kahn GY, Zhong L, Montoya JG, Pinsky BA, Doan T.

Br J Ophthalmol. 2019 Apr;103(4):569-572. doi: 10.1136/bjophthalmol-2018-313064. Epub 2019 Jan 12.

20.

Virus-inclusive single-cell RNA sequencing reveals the molecular signature of progression to severe dengue.

Zanini F, Robinson ML, Croote D, Sahoo MK, Sanz AM, Ortiz-Lasso E, Albornoz LL, Rosso F, Montoya JG, Goo L, Pinsky BA, Quake SR, Einav S.

Proc Natl Acad Sci U S A. 2018 Dec 26;115(52):E12363-E12369. doi: 10.1073/pnas.1813819115. Epub 2018 Dec 7.

21.

Deep sequencing prompts the modification of a real-time RT-PCR for the serotype-specific detection of polioviruses.

Holubar M, Sahoo MK, Huang C, Mohamed-Hadley A, Liu Y, Waggoner JJ, Troy SB, García-García L, Ferreyra-Reyes L, Maldonado Y, Pinsky BA.

J Virol Methods. 2019 Feb;264:38-43. doi: 10.1016/j.jviromet.2018.11.007. Epub 2018 Nov 14.

22.

Evaluating for Human Herpesvirus 6 in the Liver Explants of Children With Liver Failure of Unknown Etiology.

Yang CH, Sahoo MK, Fitzpatrick M, Lau AH, Pinsky BA, Martinez OM.

J Infect Dis. 2019 Jul 2;220(3):361-369. doi: 10.1093/infdis/jiy644.

PMID:
30418598
23.

Native kidney cytomegalovirus nephritis and cytomegalovirus prostatitis in a kidney transplant recipient.

Tan SK, Cheng XS, Kao CS, Weber J, Pinsky BA, Gill HS, Busque S, Subramanian AK, Tan JC.

Transpl Infect Dis. 2019 Feb;21(1):e12998. doi: 10.1111/tid.12998. Epub 2018 Sep 28.

PMID:
30203504
24.

Yellow Fever Virus: Diagnostics for a Persistent Arboviral Threat.

Waggoner JJ, Rojas A, Pinsky BA.

J Clin Microbiol. 2018 Sep 25;56(10). pii: e00827-18. doi: 10.1128/JCM.00827-18. Print 2018 Oct. Review.

25.

Multiplexed identification, quantification and genotyping of infectious agents using a semiconductor biochip.

Hassibi A, Manickam A, Singh R, Bolouki S, Sinha R, Jirage KB, McDermott MW, Hassibi B, Vikalo H, Mazarei G, Pei L, Bousse L, Miller M, Heshami M, Savage MP, Taylor MT, Gamini N, Wood N, Mantina P, Grogan P, Kuimelis P, Savalia P, Conradson S, Li Y, Meyer RB, Ku E, Ebert J, Pinsky BA, Dolganov G, Van T, Johnson KA, Naraghi-Arani P, Kuimelis RG, Schoolnik G.

Nat Biotechnol. 2018 Sep;36(8):738-745. doi: 10.1038/nbt.4179. Epub 2018 Jul 16.

PMID:
30010676
26.

Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted Human Immunodeficiency Virus Type 1 Drug Resistance in a Large US Clinic Population.

Rhee SY, Clutter D, Fessel WJ, Klein D, Slome S, Pinsky BA, Marcus JL, Hurley L, Silverberg MJ, Kosakovsky Pond SL, Shafer RW.

Clin Infect Dis. 2019 Jan 7;68(2):213-221. doi: 10.1093/cid/ciy453.

27.

Comparison of an In Vitro Diagnostic Next-Generation Sequencing Assay with Sanger Sequencing for HIV-1 Genotypic Resistance Testing.

Tzou PL, Ariyaratne P, Varghese V, Lee C, Rakhmanaliev E, Villy C, Yee M, Tan K, Michel G, Pinsky BA, Shafer RW.

J Clin Microbiol. 2018 May 25;56(6). pii: e00105-18. doi: 10.1128/JCM.00105-18. Print 2018 Jun.

28.

Internally Controlled, Multiplex Real-Time Reverse Transcription PCR for Dengue Virus and Yellow Fever Virus Detection.

Rojas A, Diagne CT, Stittleburg VD, Mohamed-Hadley A, de Guillén YA, Balmaseda A, Faye O, Faye O, Sall AA, Harris E, Pinsky BA, Waggoner JJ.

Am J Trop Med Hyg. 2018 Jun;98(6):1833-1836. doi: 10.4269/ajtmh.18-0024. Epub 2018 Mar 29.

29.

Transplant Virus Detection Using Multiplex Targeted Sequencing.

Tan SK, Shen P, Lefterova MI, Sahoo MK, Fung E, Odegaard JI, Davis RW, Pinsky BA, Scharfe C.

J Appl Lab Med. 2018 Mar;2(5):757-769. doi: 10.1373/jalm.2017.024521.

30.

Poor Immunogenicity, Not Vaccine Strain Egg Adaptation, May Explain the Low H3N2 Influenza Vaccine Effectiveness in 2012-2013.

Cobey S, Gouma S, Parkhouse K, Chambers BS, Ertl HC, Schmader KE, Halpin RA, Lin X, Stockwell TB, Das SR, Landon E, Tesic V, Youngster I, Pinsky BA, Wentworth DE, Hensley SE, Grad YH.

Clin Infect Dis. 2018 Jul 18;67(3):327-333. doi: 10.1093/cid/ciy097.

31.

High human herpesvirus 6 viral load in pediatric allogeneic hematopoietic stem cell transplant patients is associated with detection in end organs and high mortality.

Winestone LE, Punn R, Tamaresis JS, Buckingham J, Pinsky BA, Waggoner JJ, Kharbanda S.

Pediatr Transplant. 2018 Mar;22(2). doi: 10.1111/petr.13084. Epub 2017 Nov 27.

32.

Closing the Brief Case: Confirmed Positive HIV-1 Serological Screening but Undetectable RNA Virus Load in a Pregnant Woman.

Joshi RP, Gomez CA, Steiner D, Aziz N, Pinsky BA.

J Clin Microbiol. 2017 Dec;55(12):3566-3567. doi: 10.1128/JCM.00619-17. No abstract available.

33.

The Brief Case: Confirmed Positive HIV-1 Serologic Screening but Undetectable RNA Virus Load in a Pregnant Woman.

Joshi RP, Gomez CA, Steiner D, Aziz N, Pinsky BA.

J Clin Microbiol. 2017 Dec;55(12):3316-3320. doi: 10.1128/JCM.00618-17. No abstract available.

34.

Real-time RT-PCR for Mayaro virus detection in plasma and urine.

Waggoner JJ, Rojas A, Mohamed-Hadley A, de Guillén YA, Pinsky BA.

J Clin Virol. 2018 Jan;98:1-4. doi: 10.1016/j.jcv.2017.11.006. Epub 2017 Nov 21.

35.

Zika and Chikungunya virus detection in naturally infected Aedes aegypti in Ecuador.

Cevallos V, Ponce P, Waggoner JJ, Pinsky BA, Coloma J, Quiroga C, Morales D, Cárdenas MJ.

Acta Trop. 2018 Jan;177:74-80. doi: 10.1016/j.actatropica.2017.09.029. Epub 2017 Oct 2.

PMID:
28982578
36.

Characterization of Dengue Virus Infections Among Febrile Children Clinically Diagnosed With a Non-Dengue Illness, Managua, Nicaragua.

Waggoner JJ, Gresh L, Mohamed-Hadley A, Balmaseda A, Soda KJ, Abeynayake J, Sahoo MK, Liu Y, Kuan G, Harris E, Pinsky BA.

J Infect Dis. 2017 Jun 15;215(12):1816-1823. doi: 10.1093/infdis/jix195.

37.

Prevalence of Drug-Resistant Minority Variants in Untreated HIV-1-Infected Individuals With and Those Without Transmitted Drug Resistance Detected by Sanger Sequencing.

Clutter DS, Zhou S, Varghese V, Rhee SY, Pinsky BA, Jeffrey Fessel W, Klein DB, Spielvogel E, Holmes SP, Hurley LB, Silverberg MJ, Swanstrom R, Shafer RW.

J Infect Dis. 2017 Aug 1;216(3):387-391. doi: 10.1093/infdis/jix338.

38.

The Human Virome: Implications for Clinical Practice in Transplantation Medicine.

Tan SK, Relman DA, Pinsky BA.

J Clin Microbiol. 2017 Oct;55(10):2884-2893. doi: 10.1128/JCM.00489-17. Epub 2017 Jul 19. Review.

39.

Development of a Real-Time Reverse Transcription Polymerase Chain Reaction for O'nyong-nyong Virus and Evaluation with Clinical and Mosquito Specimens from Kenya.

Waggoner J, Heath CJ, Ndenga B, Mutuku F, Sahoo MK, Mohamed-Hadley A, Vulule J, Mukoko D, Desiree LaBeaud A, Pinsky BA.

Am J Trop Med Hyg. 2017 Jul;97(1):121-124. doi: 10.4269/ajtmh.17-0027.

40.

Malaria and Chikungunya Detected Using Molecular Diagnostics Among Febrile Kenyan Children.

Waggoner J, Brichard J, Mutuku F, Ndenga B, Heath CJ, Mohamed-Hadley A, Sahoo MK, Vulule J, Lefterova M, Banaei N, Mukoko D, Pinsky BA, LaBeaud AD.

Open Forum Infect Dis. 2017 May 29;4(3):ofx110. doi: 10.1093/ofid/ofx110. eCollection 2017 Summer.

41.

Delayed Diagnosis of Tuberculous Meningitis Misdiagnosed as Herpes Simplex Virus-1 Encephalitis With the FilmArray Syndromic Polymerase Chain Reaction Panel.

Gomez CA, Pinsky BA, Liu A, Banaei N.

Open Forum Infect Dis. 2016 Dec 7;4(1):ofw245. doi: 10.1093/ofid/ofw245. eCollection 2017 Winter.

42.

Metagenomic DNA Sequencing for the Diagnosis of Intraocular Infections.

Doan T, Acharya NR, Pinsky BA, Sahoo MK, Chow ED, Banaei N, Budvytiene I, Cevallos V, Zhong L, Zhou Z, Lietman TM, DeRisi JL.

Ophthalmology. 2017 Aug;124(8):1247-1248. doi: 10.1016/j.ophtha.2017.03.045. Epub 2017 May 16. No abstract available.

43.

Stability of Zika virus in urine: Specimen processing considerations and implications for the detection of RNA targets in urine.

Tan SK, Sahoo MK, Milligan SB, Taylor N, Pinsky BA.

J Virol Methods. 2017 Oct;248:66-70. doi: 10.1016/j.jviromet.2017.04.018. Epub 2017 May 1.

PMID:
28472623
44.

Detection of Emerging Vaccine-Related Polioviruses by Deep Sequencing.

Sahoo MK, Holubar M, Huang C, Mohamed-Hadley A, Liu Y, Waggoner JJ, Troy SB, Garcia-Garcia L, Ferreyra-Reyes L, Maldonado Y, Pinsky BA.

J Clin Microbiol. 2017 Jul;55(7):2162-2171. doi: 10.1128/JCM.00144-17. Epub 2017 May 3.

45.

Pericardial Effusion Following Hematopoietic Cell Transplantation in Children and Young Adults Is Associated with Increased Risk of Mortality.

Cox K, Punn R, Weiskopf E, Pinsky BA, Kharbanda S.

Biol Blood Marrow Transplant. 2017 Jul;23(7):1165-1169. doi: 10.1016/j.bbmt.2017.03.028. Epub 2017 Apr 5.

46.

Current State of PCR-Based Epstein-Barr Virus DNA Testing for Nasopharyngeal Cancer.

Kim KY, Le QT, Yom SS, Pinsky BA, Bratman SV, Ng RH, El Mubarak HS, Chan KC, Sander M, Conley BA.

J Natl Cancer Inst. 2017 Apr 1;109(4). doi: 10.1093/jnci/djx007.

47.

Diagnosis of Zika virus infection on a nanotechnology platform.

Zhang B, Pinsky BA, Ananta JS, Zhao S, Arulkumar S, Wan H, Sahoo MK, Abeynayake J, Waggoner JJ, Hopes C, Tang M, Dai H.

Nat Med. 2017 May;23(5):548-550. doi: 10.1038/nm.4302. Epub 2017 Mar 6.

PMID:
28263312
48.

Cytomegalovirus-Responsive CD8+ T Cells Expand After Solid Organ Transplantation in the Absence of CMV Disease.

Higdon LE, Trofe-Clark J, Liu S, Margulies KB, Sahoo MK, Blumberg E, Pinsky BA, Maltzman JS.

Am J Transplant. 2017 Aug;17(8):2045-2054. doi: 10.1111/ajt.14227. Epub 2017 Mar 13.

49.

IgG antibodies to dengue enhanced for FcγRIIIA binding determine disease severity.

Wang TT, Sewatanon J, Memoli MJ, Wrammert J, Bournazos S, Bhaumik SK, Pinsky BA, Chokephaibulkit K, Onlamoon N, Pattanapanyasat K, Taubenberger JK, Ahmed R, Ravetch JV.

Science. 2017 Jan 27;355(6323):395-398. doi: 10.1126/science.aai8128.

50.

Calibration of BK Virus Nucleic Acid Amplification Testing to the 1st WHO International Standard for BK Virus.

Tan SK, Milligan S, Sahoo MK, Taylor N, Pinsky BA.

J Clin Microbiol. 2017 Mar;55(3):923-930. doi: 10.1128/JCM.02315-16. Epub 2017 Jan 4.

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