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Items: 1 to 50 of 136

1.

Evaluation of the Aptima HCV Quant Dx Assay using Serum and Dried Blood Spots.

Weber J, Sahoo MK, Taylor N, Shi RZ, Pinsky BA.

J Clin Microbiol. 2019 Feb 13. pii: JCM.00030-19. doi: 10.1128/JCM.00030-19. [Epub ahead of print]

PMID:
30760534
2.

A 20-Gene Set Predictive of Progression to Severe Dengue.

Robinson M, Sweeney TE, Barouch-Bentov R, Sahoo MK, Kalesinskas L, Vallania F, Sanz AM, Ortiz-Lasso E, Albornoz LL, Rosso F, Montoya JG, Pinsky BA, Khatri P, Einav S.

Cell Rep. 2019 Jan 29;26(5):1104-1111.e4. doi: 10.1016/j.celrep.2019.01.033.

3.

Dual-target, real-time PCR for the diagnosis of intraocular Toxoplasma gondii infections.

Gomez CA, Sahoo MK, Kahn GY, Zhong L, Montoya JG, Pinsky BA, Doan T.

Br J Ophthalmol. 2019 Jan 12. pii: bjophthalmol-2018-313064. doi: 10.1136/bjophthalmol-2018-313064. [Epub ahead of print]

4.

Virus-inclusive single-cell RNA sequencing reveals the molecular signature of progression to severe dengue.

Zanini F, Robinson ML, Croote D, Sahoo MK, Sanz AM, Ortiz-Lasso E, Albornoz LL, Rosso F, Montoya JG, Goo L, Pinsky BA, Quake SR, Einav S.

Proc Natl Acad Sci U S A. 2018 Dec 26;115(52):E12363-E12369. doi: 10.1073/pnas.1813819115. Epub 2018 Dec 7.

5.

Deep sequencing prompts the modification of a real-time RT-PCR for the serotype-specific detection of polioviruses.

Holubar M, Sahoo MK, Huang C, Mohamed-Hadley A, Liu Y, Waggoner JJ, Troy SB, García-García L, Ferreyra-Reyes L, Maldonado Y, Pinsky BA.

J Virol Methods. 2019 Feb;264:38-43. doi: 10.1016/j.jviromet.2018.11.007. Epub 2018 Nov 14.

6.

Evaluating for human herpesvirus 6 in the liver explants of children with liver failure of unknown etiology.

Yang CH, Sahoo MK, Fitzpatrick M, Lau AH, Pinsky BA, Martinez OM.

J Infect Dis. 2018 Nov 10. doi: 10.1093/infdis/jiy644. [Epub ahead of print]

PMID:
30418598
7.

Native kidney cytomegalovirus nephritis and cytomegalovirus prostatitis in a kidney transplant recipient.

Tan SK, Cheng XS, Kao CS, Weber J, Pinsky BA, Gill HS, Busque S, Subramanian AK, Tan JC.

Transpl Infect Dis. 2019 Feb;21(1):e12998. doi: 10.1111/tid.12998. Epub 2018 Sep 28.

PMID:
30203504
8.

Yellow Fever Virus: Diagnostics for a Persistent Arboviral Threat.

Waggoner JJ, Rojas A, Pinsky BA.

J Clin Microbiol. 2018 Sep 25;56(10). pii: e00827-18. doi: 10.1128/JCM.00827-18. Print 2018 Oct. Review.

PMID:
30021822
9.

Multiplexed identification, quantification and genotyping of infectious agents using a semiconductor biochip.

Hassibi A, Manickam A, Singh R, Bolouki S, Sinha R, Jirage KB, McDermott MW, Hassibi B, Vikalo H, Mazarei G, Pei L, Bousse L, Miller M, Heshami M, Savage MP, Taylor MT, Gamini N, Wood N, Mantina P, Grogan P, Kuimelis P, Savalia P, Conradson S, Li Y, Meyer RB, Ku E, Ebert J, Pinsky BA, Dolganov G, Van T, Johnson KA, Naraghi-Arani P, Kuimelis RG, Schoolnik G.

Nat Biotechnol. 2018 Sep;36(8):738-745. doi: 10.1038/nbt.4179. Epub 2018 Jul 16.

PMID:
30010676
10.

FOXP3-positive T-cell lymphomas in non-HTLV1 carriers include ALK-negative anaplastic large cell lymphoma: expanding the spectrum of T-cell lymphomas with regulatory phenotype.

Ferreira CR, Zhao S, Sahoo MK, Pinsky B, Weber J, Lage LAPC, Pereira J, Zerbini MCN, Natkunam Y.

Hum Pathol. 2018 Oct;80:138-144. doi: 10.1016/j.humpath.2018.06.001. Epub 2018 Jun 10.

PMID:
29898383
11.

Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted Human Immunodeficiency Virus Type 1 Drug Resistance in a Large US Clinic Population.

Rhee SY, Clutter D, Fessel WJ, Klein D, Slome S, Pinsky BA, Marcus JL, Hurley L, Silverberg MJ, Kosakovsky Pond SL, Shafer RW.

Clin Infect Dis. 2019 Jan 7;68(2):213-221. doi: 10.1093/cid/ciy453.

12.

Comparison of an In Vitro Diagnostic Next-Generation Sequencing Assay with Sanger Sequencing for HIV-1 Genotypic Resistance Testing.

Tzou PL, Ariyaratne P, Varghese V, Lee C, Rakhmanaliev E, Villy C, Yee M, Tan K, Michel G, Pinsky BA, Shafer RW.

J Clin Microbiol. 2018 May 25;56(6). pii: e00105-18. doi: 10.1128/JCM.00105-18. Print 2018 Jun.

13.

Internally Controlled, Multiplex Real-Time Reverse Transcription PCR for Dengue Virus and Yellow Fever Virus Detection.

Rojas A, Diagne CT, Stittleburg VD, Mohamed-Hadley A, de Guillén YA, Balmaseda A, Faye O, Faye O, Sall AA, Harris E, Pinsky BA, Waggoner JJ.

Am J Trop Med Hyg. 2018 Jun;98(6):1833-1836. doi: 10.4269/ajtmh.18-0024. Epub 2018 Mar 29.

PMID:
29611509
14.

Poor Immunogenicity, Not Vaccine Strain Egg Adaptation, May Explain the Low H3N2 Influenza Vaccine Effectiveness in 2012-2013.

Cobey S, Gouma S, Parkhouse K, Chambers BS, Ertl HC, Schmader KE, Halpin RA, Lin X, Stockwell TB, Das SR, Landon E, Tesic V, Youngster I, Pinsky BA, Wentworth DE, Hensley SE, Grad YH.

Clin Infect Dis. 2018 Jul 18;67(3):327-333. doi: 10.1093/cid/ciy097.

15.

Effect of ombitasvir/paritaprevir/ritonavir + dasabuvir regimen on health-related quality of life for patients with hepatitis C.

Saab S, Mehta D, Hudgens S, Grunow N, Bao Y, Pinsky B.

Liver Int. 2018 Aug;38(8):1377-1394. doi: 10.1111/liv.13690. Epub 2018 Feb 12.

PMID:
29314597
16.

High human herpesvirus 6 viral load in pediatric allogeneic hematopoietic stem cell transplant patients is associated with detection in end organs and high mortality.

Winestone LE, Punn R, Tamaresis JS, Buckingham J, Pinsky BA, Waggoner JJ, Kharbanda S.

Pediatr Transplant. 2018 Mar;22(2). doi: 10.1111/petr.13084. Epub 2017 Nov 27.

PMID:
29181879
17.

Closing the Brief Case: Confirmed Positive HIV-1 Serological Screening but Undetectable RNA Virus Load in a Pregnant Woman.

Joshi RP, Gomez CA, Steiner D, Aziz N, Pinsky BA.

J Clin Microbiol. 2017 Dec;55(12):3566-3567. doi: 10.1128/JCM.00619-17. No abstract available.

18.

The Brief Case: Confirmed Positive HIV-1 Serologic Screening but Undetectable RNA Virus Load in a Pregnant Woman.

Joshi RP, Gomez CA, Steiner D, Aziz N, Pinsky BA.

J Clin Microbiol. 2017 Dec;55(12):3316-3320. doi: 10.1128/JCM.00618-17. No abstract available.

19.

Real-time RT-PCR for Mayaro virus detection in plasma and urine.

Waggoner JJ, Rojas A, Mohamed-Hadley A, de Guillén YA, Pinsky BA.

J Clin Virol. 2018 Jan;98:1-4. doi: 10.1016/j.jcv.2017.11.006. Epub 2017 Nov 21.

20.

Sustained virological response to ombitasvir/paritaprevir/ritonavir and dasabuvir treatment for hepatitis C: Real-world data from a large healthcare provider.

Weil C, Mehta D, Koren G, Pinsky B, Samp JC, Chodick G, Shalev V.

J Viral Hepat. 2018 Feb;25(2):144-151. doi: 10.1111/jvh.12800. Epub 2017 Nov 7.

PMID:
28984012
21.

Zika and Chikungunya virus detection in naturally infected Aedes aegypti in Ecuador.

Cevallos V, Ponce P, Waggoner JJ, Pinsky BA, Coloma J, Quiroga C, Morales D, Cárdenas MJ.

Acta Trop. 2018 Jan;177:74-80. doi: 10.1016/j.actatropica.2017.09.029. Epub 2017 Oct 2.

PMID:
28982578
22.

Characterization of Dengue Virus Infections Among Febrile Children Clinically Diagnosed With a Non-Dengue Illness, Managua, Nicaragua.

Waggoner JJ, Gresh L, Mohamed-Hadley A, Balmaseda A, Soda KJ, Abeynayake J, Sahoo MK, Liu Y, Kuan G, Harris E, Pinsky BA.

J Infect Dis. 2017 Jun 15;215(12):1816-1823. doi: 10.1093/infdis/jix195.

23.

Prevalence of Drug-Resistant Minority Variants in Untreated HIV-1-Infected Individuals With and Those Without Transmitted Drug Resistance Detected by Sanger Sequencing.

Clutter DS, Zhou S, Varghese V, Rhee SY, Pinsky BA, Jeffrey Fessel W, Klein DB, Spielvogel E, Holmes SP, Hurley LB, Silverberg MJ, Swanstrom R, Shafer RW.

J Infect Dis. 2017 Aug 1;216(3):387-391. doi: 10.1093/infdis/jix338.

24.

The Human Virome: Implications for Clinical Practice in Transplantation Medicine.

Tan SK, Relman DA, Pinsky BA.

J Clin Microbiol. 2017 Oct;55(10):2884-2893. doi: 10.1128/JCM.00489-17. Epub 2017 Jul 19. Review.

25.

Development of a Real-Time Reverse Transcription Polymerase Chain Reaction for O'nyong-nyong Virus and Evaluation with Clinical and Mosquito Specimens from Kenya.

Waggoner J, Heath CJ, Ndenga B, Mutuku F, Sahoo MK, Mohamed-Hadley A, Vulule J, Mukoko D, Desiree LaBeaud A, Pinsky BA.

Am J Trop Med Hyg. 2017 Jul;97(1):121-124. doi: 10.4269/ajtmh.17-0027.

26.

Malaria and Chikungunya Detected Using Molecular Diagnostics Among Febrile Kenyan Children.

Waggoner J, Brichard J, Mutuku F, Ndenga B, Heath CJ, Mohamed-Hadley A, Sahoo MK, Vulule J, Lefterova M, Banaei N, Mukoko D, Pinsky BA, LaBeaud AD.

Open Forum Infect Dis. 2017 May 29;4(3):ofx110. doi: 10.1093/ofid/ofx110. eCollection 2017 Summer.

27.

Delayed Diagnosis of Tuberculous Meningitis Misdiagnosed as Herpes Simplex Virus-1 Encephalitis With the FilmArray Syndromic Polymerase Chain Reaction Panel.

Gomez CA, Pinsky BA, Liu A, Banaei N.

Open Forum Infect Dis. 2016 Dec 7;4(1):ofw245. doi: 10.1093/ofid/ofw245. eCollection 2017 Winter.

28.

Metagenomic DNA Sequencing for the Diagnosis of Intraocular Infections.

Doan T, Acharya NR, Pinsky BA, Sahoo MK, Chow ED, Banaei N, Budvytiene I, Cevallos V, Zhong L, Zhou Z, Lietman TM, DeRisi JL.

Ophthalmology. 2017 Aug;124(8):1247-1248. doi: 10.1016/j.ophtha.2017.03.045. Epub 2017 May 16. No abstract available.

29.

Stability of Zika virus in urine: Specimen processing considerations and implications for the detection of RNA targets in urine.

Tan SK, Sahoo MK, Milligan SB, Taylor N, Pinsky BA.

J Virol Methods. 2017 Oct;248:66-70. doi: 10.1016/j.jviromet.2017.04.018. Epub 2017 May 1.

PMID:
28472623
30.

Detection of Emerging Vaccine-Related Polioviruses by Deep Sequencing.

Sahoo MK, Holubar M, Huang C, Mohamed-Hadley A, Liu Y, Waggoner JJ, Troy SB, Garcia-Garcia L, Ferreyra-Reyes L, Maldonado Y, Pinsky BA.

J Clin Microbiol. 2017 Jul;55(7):2162-2171. doi: 10.1128/JCM.00144-17. Epub 2017 May 3.

31.

Pericardial Effusion Following Hematopoietic Cell Transplantation in Children and Young Adults Is Associated with Increased Risk of Mortality.

Cox K, Punn R, Weiskopf E, Pinsky BA, Kharbanda S.

Biol Blood Marrow Transplant. 2017 Jul;23(7):1165-1169. doi: 10.1016/j.bbmt.2017.03.028. Epub 2017 Apr 5.

32.

Current State of PCR-Based Epstein-Barr Virus DNA Testing for Nasopharyngeal Cancer.

Kim KY, Le QT, Yom SS, Pinsky BA, Bratman SV, Ng RH, El Mubarak HS, Chan KC, Sander M, Conley BA.

J Natl Cancer Inst. 2017 Apr 1;109(4). doi: 10.1093/jnci/djx007.

33.

Diagnosis of Zika virus infection on a nanotechnology platform.

Zhang B, Pinsky BA, Ananta JS, Zhao S, Arulkumar S, Wan H, Sahoo MK, Abeynayake J, Waggoner JJ, Hopes C, Tang M, Dai H.

Nat Med. 2017 May;23(5):548-550. doi: 10.1038/nm.4302. Epub 2017 Mar 6.

PMID:
28263312
34.

Cytomegalovirus-Responsive CD8+ T Cells Expand After Solid Organ Transplantation in the Absence of CMV Disease.

Higdon LE, Trofe-Clark J, Liu S, Margulies KB, Sahoo MK, Blumberg E, Pinsky BA, Maltzman JS.

Am J Transplant. 2017 Aug;17(8):2045-2054. doi: 10.1111/ajt.14227. Epub 2017 Mar 13.

35.

High incidence of Zika virus infection detected in plasma and cervical cytology specimens from pregnant women in Guayaquil, Ecuador.

Zambrano H, Waggoner J, León K, Pinsky B, Vera K, Schettino M, Rivera L, Landivar J, Granda M, Lee A, Mor G.

Am J Reprod Immunol. 2017 Feb;77(2). doi: 10.1111/aji.12630.

PMID:
28177195
36.

Zika Virus, Chikungunya Virus, and Dengue Virus in Cerebrospinal Fluid from Adults with Neurological Manifestations, Guayaquil, Ecuador.

Acevedo N, Waggoner J, Rodriguez M, Rivera L, Landivar J, Pinsky B, Zambrano H.

Front Microbiol. 2017 Jan 24;8:42. doi: 10.3389/fmicb.2017.00042. eCollection 2017.

37.

IgG antibodies to dengue enhanced for FcγRIIIA binding determine disease severity.

Wang TT, Sewatanon J, Memoli MJ, Wrammert J, Bournazos S, Bhaumik SK, Pinsky BA, Chokephaibulkit K, Onlamoon N, Pattanapanyasat K, Taubenberger JK, Ahmed R, Ravetch JV.

Science. 2017 Jan 27;355(6323):395-398. doi: 10.1126/science.aai8128.

38.

Calibration of BK Virus Nucleic Acid Amplification Testing to the 1st WHO International Standard for BK Virus.

Tan SK, Milligan S, Sahoo MK, Taylor N, Pinsky BA.

J Clin Microbiol. 2017 Mar;55(3):923-930. doi: 10.1128/JCM.02315-16. Epub 2017 Jan 4.

39.

Entangled Photon Excited Fluorescence in Organic Materials: An Ultrafast Coincidence Detector.

Varnavski O, Pinsky B, Goodson T 3rd.

J Phys Chem Lett. 2017 Jan 19;8(2):388-393. doi: 10.1021/acs.jpclett.6b02378. Epub 2017 Jan 5.

PMID:
28029793
40.

Progress in Quantitative Viral Load Testing: Variability and Impact of the WHO Quantitative International Standards.

Hayden RT, Sun Y, Tang L, Procop GW, Hillyard DR, Pinsky BA, Young SA, Caliendo AM.

J Clin Microbiol. 2017 Feb;55(2):423-430. doi: 10.1128/JCM.02044-16. Epub 2016 Nov 16.

41.

Current and future molecular diagnostics for ocular infectious diseases.

Doan T, Pinsky BA.

Curr Opin Ophthalmol. 2016 Nov;27(6):561-567. Review.

PMID:
27585214
42.

Viremia and Clinical Presentation in Nicaraguan Patients Infected With Zika Virus, Chikungunya Virus, and Dengue Virus.

Waggoner JJ, Gresh L, Vargas MJ, Ballesteros G, Tellez Y, Soda KJ, Sahoo MK, Nuñez A, Balmaseda A, Harris E, Pinsky BA.

Clin Infect Dis. 2016 Dec 15;63(12):1584-1590. Epub 2016 Aug 30.

43.

Molecular diagnostics for human leptospirosis.

Waggoner JJ, Pinsky BA.

Curr Opin Infect Dis. 2016 Oct;29(5):440-5. doi: 10.1097/QCO.0000000000000295. Review.

44.

Evaluation of the Aptima HIV-1 Quant Dx Assay Using Plasma and Dried Blood Spots.

Sahoo MK, Varghese V, White E, Winslow M, Katzenstein DA, Shafer RW, Pinsky BA.

J Clin Microbiol. 2016 Oct;54(10):2597-601. doi: 10.1128/JCM.01569-16. Epub 2016 Aug 17.

45.

Two Phase 3 Trials of Adalimumab for Hidradenitis Suppurativa.

Kimball AB, Okun MM, Williams DA, Gottlieb AB, Papp KA, Zouboulis CC, Armstrong AW, Kerdel F, Gold MH, Forman SB, Korman NJ, Giamarellos-Bourboulis EJ, Crowley JJ, Lynde C, Reguiai Z, Prens EP, Alwawi E, Mostafa NM, Pinsky B, Sundaram M, Gu Y, Carlson DM, Jemec GB.

N Engl J Med. 2016 Aug 4;375(5):422-34. doi: 10.1056/NEJMoa1504370.

46.

Zika Virus and Chikungunya Virus CoInfections: A Series of Three Cases from a Single Center in Ecuador.

Zambrano H, Waggoner JJ, Almeida C, Rivera L, Benjamin JQ, Pinsky BA.

Am J Trop Med Hyg. 2016 Oct 5;95(4):894-896. Epub 2016 Jul 11.

47.

Clinical characteristics and outcomes of pediatric patients with CMV DNA detection in bronchoalveolar lavage fluid.

Burgener EB, Waggoner J, Pinsky BA, Chen SF.

Pediatr Pulmonol. 2017 Jan;52(1):112-118. doi: 10.1002/ppul.23494. Epub 2016 Jun 9.

PMID:
27280337
48.

Single-Reaction Multiplex Reverse Transcription PCR for Detection of Zika, Chikungunya, and Dengue Viruses.

Waggoner JJ, Gresh L, Mohamed-Hadley A, Ballesteros G, Davila MJ, Tellez Y, Sahoo MK, Balmaseda A, Harris E, Pinsky BA.

Emerg Infect Dis. 2016 Jul;22(7):1295-7. doi: 10.3201/eid2207.160326. Epub 2016 Jul 15.

49.

Q148N, a Novel Integrase Inhibitor Resistance Mutation Associated with Low-Level Reduction in Elvitegravir Susceptibility.

Varghese V, Pinsky BA, Smith DS, Klein D, Shafer RW.

AIDS Res Hum Retroviruses. 2016 Jul;32(7):702-4. doi: 10.1089/AID.2016.0038. Epub 2016 Apr 19.

50.

Clinical evaluation of a single-reaction real-time RT-PCR for pan-dengue and chikungunya virus detection.

Waggoner JJ, Ballesteros G, Gresh L, Mohamed-Hadley A, Tellez Y, Sahoo MK, Abeynayake J, Balmaseda A, Harris E, Pinsky BA.

J Clin Virol. 2016 May;78:57-61. doi: 10.1016/j.jcv.2016.01.007. Epub 2016 Feb 27.

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