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Items: 41

1.

High-Accuracy Mass Spectrometry Based Screening Method for the Discovery of Cysteine Containing Peptides in Animal Venoms and Toxins.

van Oosten LN, Pinkse MWH, Pieterse M, Escoubas P, Verhaert PDEM.

Methods Mol Biol. 2018;1719:335-348. doi: 10.1007/978-1-4939-7537-2_22.

PMID:
29476522
2.

The deep-subsurface sulfate reducer Desulfotomaculum kuznetsovii employs two methanol-degrading pathways.

Sousa DZ, Visser M, van Gelder AH, Boeren S, Pieterse MM, Pinkse MWH, Verhaert PDEM, Vogt C, Franke S, Kümmel S, Stams AJM.

Nat Commun. 2018 Jan 16;9(1):239. doi: 10.1038/s41467-017-02518-9.

3.

High throughput techniques to reveal the molecular physiology and evolution of digestion in spiders.

Fuzita FJ, Pinkse MW, Patane JS, Verhaert PD, Lopes AR.

BMC Genomics. 2016 Sep 7;17:716. doi: 10.1186/s12864-016-3048-9.

4.

Screening Method for the Discovery of Potential Bioactive Cysteine-Containing Peptides Using 3D Mass Mapping.

van Oosten LN, Pieterse M, Pinkse MW, Verhaert PD.

J Am Soc Mass Spectrom. 2015 Dec;26(12):2039-50. doi: 10.1007/s13361-015-1282-z. Epub 2015 Nov 9.

5.

Perchlorate and chlorate reduction by the Crenarchaeon Aeropyrum pernix and two thermophilic Firmicutes.

Liebensteiner MG, Pinkse MW, Nijsse B, Verhaert PD, Tsesmetzis N, Stams AJ, Lomans BP.

Environ Microbiol Rep. 2015 Dec;7(6):936-45. doi: 10.1111/1758-2229.12335. Epub 2015 Oct 23.

PMID:
26332065
6.

Unravelling the one-carbon metabolism of the acetogen Sporomusa strain An4 by genome and proteome analysis.

Visser M, Pieterse MM, Pinkse MW, Nijsse B, Verhaert PD, de Vos WM, Schaap PJ, Stams AJ.

Environ Microbiol. 2016 Sep;18(9):2843-55. doi: 10.1111/1462-2920.12973. Epub 2015 Aug 11.

PMID:
26147498
7.

Biochemical, transcriptomic and proteomic analyses of digestion in the scorpion Tityus serrulatus: insights into function and evolution of digestion in an ancient arthropod.

Fuzita FJ, Pinkse MW, Patane JS, Juliano MA, Verhaert PD, Lopes AR.

PLoS One. 2015 Apr 15;10(4):e0123841. doi: 10.1371/journal.pone.0123841. eCollection 2015.

8.

Cysteine cathepsins as digestive enzymes in the spider Nephilengys cruentata.

Fuzita FJ, Pinkse MW, Verhaert PD, Lopes AR.

Insect Biochem Mol Biol. 2015 May;60:47-58. doi: 10.1016/j.ibmb.2015.03.005. Epub 2015 Mar 25.

PMID:
25818482
9.

Analytical characterization of complex, biotechnological feedstocks by pH gradient ion exchange chromatography for purification process development.

Kröner F, Hanke AT, Nfor BK, Pinkse MW, Verhaert PD, Ottens M, Hubbuch J.

J Chromatogr A. 2013 Oct 11;1311:55-64. doi: 10.1016/j.chroma.2013.08.034. Epub 2013 Aug 16.

PMID:
24016717
10.

Archaeal (per)chlorate reduction at high temperature: an interplay of biotic and abiotic reactions.

Liebensteiner MG, Pinkse MW, Schaap PJ, Stams AJ, Lomans BP.

Science. 2013 Apr 5;340(6128):85-7. doi: 10.1126/science.1233957.

11.

Molecular characterization of Saccharomyces cerevisiae α-pheromone by mass spectrometry-based peptidomics.

Bener Aksam E, Pinkse MW, Verhaert PD.

FEMS Yeast Res. 2013 May;13(3):350-3. doi: 10.1111/1567-1364.12032. Epub 2013 Mar 11.

12.

(89)Zr-labeled paramagnetic octreotide-liposomes for PET-MR imaging of cancer.

Abou DS, Thorek DL, Ramos NN, Pinkse MW, Wolterbeek HT, Carlin SD, Beattie BJ, Lewis JS.

Pharm Res. 2013 Mar;30(3):878-88. doi: 10.1007/s11095-012-0929-8. Epub 2012 Dec 7.

13.

Miniaturized mass-spectrometry-based analysis system for fully automated examination of conditioned cell culture media.

Weber E, Pinkse MW, Bener-Aksam E, Vellekoop MJ, Verhaert PD.

Int J Proteomics. 2012;2012:290457. doi: 10.1155/2012/290457. Epub 2012 Oct 4.

14.

PTM-driven differential peptide display: survey of peptides containing inter/intra-molecular disulfide bridges in frog venoms.

Evaristo GP, Verhaert PD, Pinkse MW.

J Proteomics. 2012 Dec 21;77:215-24. doi: 10.1016/j.jprot.2012.09.001. Epub 2012 Sep 10.

PMID:
22975675
15.

Multi-dimensional fractionation and characterization of crude protein mixtures: toward establishment of a database of protein purification process development parameters.

Nfor BK, Ahamed T, Pinkse MW, van der Wielen LA, Verhaert PD, van Dedem GW, Eppink MH, van de Sandt EJ, Ottens M.

Biotechnol Bioeng. 2012 Dec;109(12):3070-83. doi: 10.1002/bit.24576. Epub 2012 Jul 4.

PMID:
22688729
16.

Exploring the microbial metalloproteome using MIRAGE.

Sevcenco AM, Pinkse MW, Wolterbeek HT, Verhaert PD, Hagen WR, Hagedoorn PL.

Metallomics. 2011 Dec;3(12):1324-30. doi: 10.1039/c1mt00154j. Epub 2011 Nov 17.

PMID:
22094925
17.

A protocol on the use of titanium dioxide chromatography for phosphoproteomics.

Pinkse MW, Lemeer S, Heck AJ.

Methods Mol Biol. 2011;753:215-28. doi: 10.1007/978-1-61779-148-2_14.

PMID:
21604125
18.

Purification, characterization, and cloning of a bifunctional molybdoenzyme with hydratase and alcohol dehydrogenase activity.

Jin J, Straathof AJ, Pinkse MW, Hanefeld U.

Appl Microbiol Biotechnol. 2011 Mar;89(6):1831-40. doi: 10.1007/s00253-010-2996-2. Epub 2010 Dec 1.

19.

Imaging of similar mass neuropeptides in neuronal tissue by enhanced resolution MALDI MS with an ion trap - Orbitrap hybrid instrument.

Verhaert PD, Pinkse MW, Strupat K, Conaway MC.

Methods Mol Biol. 2010;656:433-49. doi: 10.1007/978-1-60761-746-4_25.

PMID:
20680606
20.

Molybdenum incorporation in tungsten aldehyde oxidoreductase enzymes from Pyrococcus furiosus.

Sevcenco AM, Bevers LE, Pinkse MW, Krijger GC, Wolterbeek HT, Verhaert PD, Hagen WR, Hagedoorn PL.

J Bacteriol. 2010 Aug;192(16):4143-52. doi: 10.1128/JB.00270-10. Epub 2010 Jun 18.

21.

The tungsten metallome of Pyrococcus furiosus.

Sevcenco AM, Pinkse MW, Bol E, Krijger GC, Wolterbeek HT, Verhaert PD, Hagedoorn PL, Hagen WR.

Metallomics. 2009 Sep;1(5):395-402. doi: 10.1039/b908175e. Epub 2009 Jul 22.

PMID:
21305143
22.

Phosphorylation dynamics during early differentiation of human embryonic stem cells.

Van Hoof D, Muñoz J, Braam SR, Pinkse MW, Linding R, Heck AJ, Mummery CL, Krijgsveld J.

Cell Stem Cell. 2009 Aug 7;5(2):214-26. doi: 10.1016/j.stem.2009.05.021.

23.

Oleate hydratase catalyzes the hydration of a nonactivated carbon-carbon bond.

Bevers LE, Pinkse MW, Verhaert PD, Hagen WR.

J Bacteriol. 2009 Aug;191(15):5010-2. doi: 10.1128/JB.00306-09. Epub 2009 May 22.

24.

Mode of action of cGMP-dependent protein kinase-specific inhibitors probed by photoaffinity cross-linking mass spectrometry.

Pinkse MW, Rijkers DT, Dostmann WR, Heck AJ.

J Biol Chem. 2009 Jun 12;284(24):16354-68. doi: 10.1074/jbc.M808521200. Epub 2009 Apr 15.

25.

In vivo stable isotope labeling of fruit flies reveals post-transcriptional regulation in the maternal-to-zygotic transition.

Gouw JW, Pinkse MW, Vos HR, Moshkin Y, Verrijzer CP, Heck AJ, Krijgsveld J.

Mol Cell Proteomics. 2009 Jul;8(7):1566-78. doi: 10.1074/mcp.M900114-MCP200. Epub 2009 Mar 24.

26.

Development of a generic approach to native metalloproteomics: application to the quantitative identification of soluble copper proteins in Escherichia coli.

Sevcenco AM, Krijger GC, Pinkse MW, Verhaert PD, Hagen WR, Hagedoorn PL.

J Biol Inorg Chem. 2009 May;14(4):631-40. doi: 10.1007/s00775-009-0477-9. Epub 2009 Feb 11.

PMID:
19205756
27.

Chip-Based Enrichment and NanoLC-MS/MS Analysis of Phosphopeptides from Whole Lysates.

Mohammed S, Kraiczek K, Pinkse MW, Lemeer S, Benschop JJ, Heck AJ.

J Proteome Res. 2008 Apr;7(4):1565-71. doi: 10.1021/pr700635a. Epub 2008 Feb 29.

PMID:
18307298
28.

Online automated in vivo zebrafish phosphoproteomics: from large-scale analysis down to a single embryo.

Lemeer S, Pinkse MW, Mohammed S, van Breukelen B, den Hertog J, Slijper M, Heck AJ.

J Proteome Res. 2008 Apr;7(4):1555-64. doi: 10.1021/pr700667w. Epub 2008 Feb 29.

PMID:
18307296
29.

Highly robust, automated, and sensitive online TiO2-based phosphoproteomics applied to study endogenous phosphorylation in Drosophila melanogaster.

Pinkse MW, Mohammed S, Gouw JW, van Breukelen B, Vos HR, Heck AJ.

J Proteome Res. 2008 Feb;7(2):687-97. Epub 2007 Nov 23.

PMID:
18034456
30.

Suction blister fluid as potential body fluid for biomarker proteins.

Kool J, Reubsaet L, Wesseldijk F, Maravilha RT, Pinkse MW, D'Santos CS, van Hilten JJ, Zijlstra FJ, Heck AJ.

Proteomics. 2007 Oct;7(20):3638-50.

PMID:
17890648
31.

An experimental correction for arginine-to-proline conversion artifacts in SILAC-based quantitative proteomics.

Van Hoof D, Pinkse MW, Oostwaard DW, Mummery CL, Heck AJ, Krijgsveld J.

Nat Methods. 2007 Sep;4(9):677-8. No abstract available.

PMID:
17762871
32.

Endogenous phosphotyrosine signaling in zebrafish embryos.

Lemeer S, Ruijtenbeek R, Pinkse MW, Jopling C, Heck AJ, den Hertog J, Slijper M.

Mol Cell Proteomics. 2007 Dec;6(12):2088-99. Epub 2007 Aug 14.

33.

Essential enrichment strategies in phosphoproteomics.

Pinkse MW, Heck AJ.

Drug Discov Today Technol. 2006 Autumn;3(3):331-7. doi: 10.1016/j.ddtec.2006.09.009.

PMID:
24980537
34.

Investigating the dynamic nature of the interactions between nuclear proteins and histones upon DNA damage using an immobilized peptide chemical proteomics approach.

Dirksen EH, Pinkse MW, Rijkers DT, Cloos J, Liskamp RM, Slijper M, Heck AJ.

J Proteome Res. 2006 Sep;5(9):2380-8.

PMID:
16944950
35.

Protein expression dynamics during replicative senescence of endothelial cells studied by 2-D difference in-gel electrophoresis.

Eman MR, Regan-Klapisz E, Pinkse MW, Koop IM, Haverkamp J, Heck AJ, Verkleij AJ, Post JA.

Electrophoresis. 2006 Apr;27(8):1669-82.

PMID:
16609940
36.

A quest for human and mouse embryonic stem cell-specific proteins.

Van Hoof D, Passier R, Ward-Van Oostwaard D, Pinkse MW, Heck AJ, Mummery CL, Krijgsveld J.

Mol Cell Proteomics. 2006 Jul;5(7):1261-73. Epub 2006 Apr 6.

37.

Probing noncovalent protein-ligand interactions of the cGMP-dependent protein kinase using electrospray ionization time of flight mass spectrometry.

Pinkse MWH, Heck AJR, Rumpel K, Pullen F.

J Am Soc Mass Spectrom. 2004 Oct;15(10):1392-1399. doi: 10.1016/j.jasms.2004.06.015.

38.
39.

Macromolecular assembly of Helicobacter pylori urease investigated by mass spectrometry.

Pinkse MW, Maier CS, Kim JI, Oh BH, Heck AJ.

J Mass Spectrom. 2003 Mar;38(3):315-20.

PMID:
12644993

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