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Distinct Coastal Microbiome Populations Associated With Autochthonous- and Allochthonous-Like Dissolved Organic Matter.

Broman E, Asmala E, Carstensen J, Pinhassi J, Dopson M.

Front Microbiol. 2019 Nov 7;10:2579. doi: 10.3389/fmicb.2019.02579. eCollection 2019.


Genomic and Seasonal Variations among Aquatic Phages Infecting the Baltic Sea Gammaproteobacterium Rheinheimera sp. Strain BAL341.

Nilsson E, Li K, Fridlund J, Šulčius S, Bunse C, Karlsson CMG, Lindh M, Lundin D, Pinhassi J, Holmfeldt K.

Appl Environ Microbiol. 2019 Aug 29;85(18). pii: e01003-19. doi: 10.1128/AEM.01003-19. Print 2019 Sep 15.


Direct effects of organic pollutants on the growth and gene expression of the Baltic Sea model bacterium Rheinheimera sp. BAL341.

Karlsson CMG, Cerro-Gálvez E, Lundin D, Karlsson C, Vila-Costa M, Pinhassi J.

Microb Biotechnol. 2019 Sep;12(5):892-906. doi: 10.1111/1751-7915.13441. Epub 2019 Jul 4.


Microbial responses to anthropogenic dissolved organic carbon in the Arctic and Antarctic coastal seawaters.

Cerro-Gálvez E, Casal P, Lundin D, Piña B, Pinhassi J, Dachs J, Vila-Costa M.

Environ Microbiol. 2019 Apr;21(4):1466-1481. doi: 10.1111/1462-2920.14580. Epub 2019 Mar 21.


High Frequency Multi-Year Variability in Baltic Sea Microbial Plankton Stocks and Activities.

Bunse C, Israelsson S, Baltar F, Bertos-Fortis M, Fridolfsson E, Legrand C, Lindehoff E, Lindh MV, Martínez-García S, Pinhassi J.

Front Microbiol. 2019 Jan 17;9:3296. doi: 10.3389/fmicb.2018.03296. eCollection 2018.


Repeated evolutionary transitions of flavobacteria from marine to non-marine habitats.

Zhang H, Yoshizawa S, Sun Y, Huang Y, Chu X, González JM, Pinhassi J, Luo H.

Environ Microbiol. 2019 Feb;21(2):648-666. doi: 10.1111/1462-2920.14509. Epub 2019 Jan 13.


Prevalent reliance of bacterioplankton on exogenous vitamin B1 and precursor availability.

Paerl RW, Sundh J, Tan D, Svenningsen SL, Hylander S, Pinhassi J, Andersson AF, Riemann L.

Proc Natl Acad Sci U S A. 2018 Oct 30;115(44):E10447-E10456. doi: 10.1073/pnas.1806425115. Epub 2018 Oct 15.


Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes.

Alneberg J, Karlsson CMG, Divne AM, Bergin C, Homa F, Lindh MV, Hugerth LW, Ettema TJG, Bertilsson S, Andersson AF, Pinhassi J.

Microbiome. 2018 Sep 28;6(1):173. doi: 10.1186/s40168-018-0550-0.


Response of Microbial Communities to Changing Climate Conditions During Summer Cyanobacterial Blooms in the Baltic Sea.

Berner C, Bertos-Fortis M, Pinhassi J, Legrand C.

Front Microbiol. 2018 Jul 25;9:1562. doi: 10.3389/fmicb.2018.01562. eCollection 2018.


BARM and BalticMicrobeDB, a reference metagenome and interface to meta-omic data for the Baltic Sea.

Alneberg J, Sundh J, Bennke C, Beier S, Lundin D, Hugerth LW, Pinhassi J, Kisand V, Riemann L, Jürgens K, Labrenz M, Andersson AF.

Sci Data. 2018 Jul 31;5:180146. doi: 10.1038/sdata.2018.146.


Oxygenation of Hypoxic Coastal Baltic Sea Sediments Impacts on Chemistry, Microbial Community Composition, and Metabolism.

Broman E, Sachpazidou V, Pinhassi J, Dopson M.

Front Microbiol. 2017 Dec 12;8:2453. doi: 10.3389/fmicb.2017.02453. eCollection 2017.


Shifts in coastal sediment oxygenation cause pronounced changes in microbial community composition and associated metabolism.

Broman E, Sjöstedt J, Pinhassi J, Dopson M.

Microbiome. 2017 Aug 9;5(1):96. doi: 10.1186/s40168-017-0311-5.


Comparative proteomics reveals signature metabolisms of exponentially growing and stationary phase marine bacteria.

Muthusamy S, Lundin D, Mamede Branca RM, Baltar F, González JM, Lehtiö J, Pinhassi J.

Environ Microbiol. 2017 Jun;19(6):2301-2319. doi: 10.1111/1462-2920.13725. Epub 2017 Apr 3.


Microbial Biotreatment of Actual Textile Wastewater in a Continuous Sequential Rice Husk Biofilter and the Microbial Community Involved.

Forss J, Lindh MV, Pinhassi J, Welander U.

PLoS One. 2017 Jan 23;12(1):e0170562. doi: 10.1371/journal.pone.0170562. eCollection 2017.


Marine Bacterioplankton Seasonal Succession Dynamics.

Bunse C, Pinhassi J.

Trends Microbiol. 2017 Jun;25(6):494-505. doi: 10.1016/j.tim.2016.12.013. Epub 2017 Jan 17. Review.


Local Environmental Conditions Shape Generalist But Not Specialist Components of Microbial Metacommunities in the Baltic Sea.

Lindh MV, Sjöstedt J, Casini M, Andersson A, Legrand C, Pinhassi J.

Front Microbiol. 2016 Dec 23;7:2078. doi: 10.3389/fmicb.2016.02078. eCollection 2016.


Metapopulation theory identifies biogeographical patterns among core and satellite marine bacteria scaling from tens to thousands of kilometers.

Lindh MV, Sjöstedt J, Ekstam B, Casini M, Lundin D, Hugerth LW, Hu YO, Andersson AF, Andersson A, Legrand C, Pinhassi J.

Environ Microbiol. 2017 Mar;19(3):1222-1236. doi: 10.1111/1462-2920.13650. Epub 2017 Feb 6.


Marinomonas blandensis sp. nov., a novel marine gammaproteobacterium.

Arahal DR, Lucena T, Macián MC, Ruvira MA, González JM, Lekumberri I, Pinhassi J, Pujalte MJ.

Int J Syst Evol Microbiol. 2016 Dec;66(12):5544-5549. doi: 10.1099/ijsem.0.001554. Epub 2016 Oct 9.


Prokaryotic Responses to Ammonium and Organic Carbon Reveal Alternative CO2 Fixation Pathways and Importance of Alkaline Phosphatase in the Mesopelagic North Atlantic.

Baltar F, Lundin D, Palovaara J, Lekunberri I, Reinthaler T, Herndl GJ, Pinhassi J.

Front Microbiol. 2016 Oct 21;7:1670. eCollection 2016.


Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology.

Pinhassi J, DeLong EF, Béjà O, González JM, Pedrós-Alió C.

Microbiol Mol Biol Rev. 2016 Sep 14;80(4):929-54. doi: 10.1128/MMBR.00003-16. Print 2016 Dec. Review.


Distribution and expression of microbial rhodopsins in the Baltic Sea and adjacent waters.

Brindefalk B, Ekman M, Ininbergs K, Dupont CL, Yooseph S, Pinhassi J, Bergman B.

Environ Microbiol. 2016 Dec;18(12):4442-4455. doi: 10.1111/1462-2920.13407. Epub 2016 Jul 14.


Unscrambling Cyanobacteria Community Dynamics Related to Environmental Factors.

Bertos-Fortis M, Farnelid HM, Lindh MV, Casini M, Andersson A, Pinhassi J, Legrand C.

Front Microbiol. 2016 May 9;7:625. doi: 10.3389/fmicb.2016.00625. eCollection 2016.


Spatio-Temporal Interdependence of Bacteria and Phytoplankton during a Baltic Sea Spring Bloom.

Bunse C, Bertos-Fortis M, Sassenhagen I, Sildever S, Sjöqvist C, Godhe A, Gross S, Kremp A, Lips I, Lundholm N, Rengefors K, Sefbom J, Pinhassi J, Legrand C.

Front Microbiol. 2016 Apr 21;7:517. doi: 10.3389/fmicb.2016.00517. eCollection 2016.


Eutrophication and acidification: Do they induce changes in the dissolved organic matter dynamics in the coastal Mediterranean Sea?

Aparicio FL, Nieto-Cid M, Borrull E, Calvo E, Pelejero C, Sala MM, Pinhassi J, Gasol JM, Marrasé C.

Sci Total Environ. 2016 Sep 1;563-564:179-89. doi: 10.1016/j.scitotenv.2016.04.108. Epub 2016 Apr 30.


Metagenome-assembled genomes uncover a global brackish microbiome.

Hugerth LW, Larsson J, Alneberg J, Lindh MV, Legrand C, Pinhassi J, Andersson AF.

Genome Biol. 2015 Dec 14;16:279. doi: 10.1186/s13059-015-0834-7.


Dissolved Organic Nitrogen Inputs from Wastewater Treatment Plant Effluents Increase Responses of Planktonic Metabolic Rates to Warming.

Vaquer-Sunyer R, Conley DJ, Muthusamy S, Lindh MV, Pinhassi J, Kritzberg ES.

Environ Sci Technol. 2015 Oct 6;49(19):11411-20. doi: 10.1021/acs.est.5b00674. Epub 2015 Sep 18.


Marine bacterial community structure resilience to changes in protist predation under phytoplankton bloom conditions.

Baltar F, Palovaara J, Unrein F, Catala P, Horňák K, Šimek K, Vaqué D, Massana R, Gasol JM, Pinhassi J.

ISME J. 2016 Mar;10(3):568-81. doi: 10.1038/ismej.2015.135. Epub 2015 Aug 11.


Response of rare, common and abundant bacterioplankton to anthropogenic perturbations in a Mediterranean coastal site.

Baltar F, Palovaara J, Vila-Costa M, Salazar G, Calvo E, Pelejero C, Marrasé C, Gasol JM, Pinhassi J.

FEMS Microbiol Ecol. 2015 Jun;91(6). pii: fiv058. doi: 10.1093/femsec/fiv058. Epub 2015 May 31.


Interannual variability of phyto-bacterioplankton biomass and production in coastal and offshore waters of the Baltic Sea.

Legrand C, Fridolfsson E, Bertos-Fortis M, Lindehoff E, Larsson P, Pinhassi J, Andersson A.

Ambio. 2015 Jun;44 Suppl 3:427-38. doi: 10.1007/s13280-015-0662-8.


Consequences of increased terrestrial dissolved organic matter and temperature on bacterioplankton community composition during a Baltic Sea mesocosm experiment.

Lindh MV, Lefébure R, Degerman R, Lundin D, Andersson A, Pinhassi J.

Ambio. 2015 Jun;44 Suppl 3:402-12. doi: 10.1007/s13280-015-0659-3.


Transplant experiments uncover Baltic Sea basin-specific responses in bacterioplankton community composition and metabolic activities.

Lindh MV, Figueroa D, Sjöstedt J, Baltar F, Lundin D, Andersson A, Legrand C, Pinhassi J.

Front Microbiol. 2015 Apr 1;6:223. doi: 10.3389/fmicb.2015.00223. eCollection 2015.


Seawater mesocosm experiments in the Arctic uncover differential transfer of marine bacteria to aerosols.

Fahlgren C, Gómez-Consarnau L, Zábori J, Lindh MV, Krejci R, Mårtensson EM, Nilsson D, Pinhassi J.

Environ Microbiol Rep. 2015 Jun;7(3):460-70. doi: 10.1111/1758-2229.12273. Epub 2015 Apr 6.


Disentangling seasonal bacterioplankton population dynamics by high-frequency sampling.

Lindh MV, Sjöstedt J, Andersson AF, Baltar F, Hugerth LW, Lundin D, Muthusamy S, Legrand C, Pinhassi J.

Environ Microbiol. 2015 Jul;17(7):2459-76. doi: 10.1111/1462-2920.12720. Epub 2015 Jan 27.


Dynamics of metabolic activities and gene expression in the Roseobacter clade bacterium Phaeobacter sp. strain MED193 during growth with thiosulfate.

Muthusamy S, Baltar F, González JM, Pinhassi J.

Appl Environ Microbiol. 2014 Nov;80(22):6933-42. doi: 10.1128/AEM.02038-14. Epub 2014 Aug 29.


Stimulation of growth by proteorhodopsin phototrophy involves regulation of central metabolic pathways in marine planktonic bacteria.

Palovaara J, Akram N, Baltar F, Bunse C, Forsberg J, Pedrós-Alió C, González JM, Pinhassi J.

Proc Natl Acad Sci U S A. 2014 Sep 2;111(35):E3650-8. doi: 10.1073/pnas.1402617111. Epub 2014 Aug 18.


Functional tradeoffs underpin salinity-driven divergence in microbial community composition.

Dupont CL, Larsson J, Yooseph S, Ininbergs K, Goll J, Asplund-Samuelsson J, McCrow JP, Celepli N, Allen LZ, Ekman M, Lucas AJ, Hagström Å, Thiagarajan M, Brindefalk B, Richter AR, Andersson AF, Tenney A, Lundin D, Tovchigrechko A, Nylander JA, Brami D, Badger JH, Allen AE, Rusch DB, Hoffman J, Norrby E, Friedman R, Pinhassi J, Venter JC, Bergman B.

PLoS One. 2014 Feb 27;9(2):e89549. doi: 10.1371/journal.pone.0089549. eCollection 2014.


The phylogenetic and ecological context of cultured and whole genome-sequenced planktonic bacteria from the coastal NW Mediterranean Sea.

Lekunberri I, Gasol JM, Acinas SG, Gómez-Consarnau L, Crespo BG, Casamayor EO, Massana R, Pedrós-Alió C, Pinhassi J.

Syst Appl Microbiol. 2014 May;37(3):216-28. doi: 10.1016/j.syapm.2013.11.005. Epub 2014 Jan 23.


Major effect of hydrogen peroxide on bacterioplankton metabolism in the Northeast Atlantic.

Baltar F, Reinthaler T, Herndl GJ, Pinhassi J.

PLoS One. 2013 Apr 12;8(4):e61051. doi: 10.1371/journal.pone.0061051. Print 2013.


Consequences of increased temperature and acidification on bacterioplankton community composition during a mesocosm spring bloom in the Baltic Sea.

Lindh MV, Riemann L, Baltar F, Romero-Oliva C, Salomon PS, Granéli E, Pinhassi J.

Environ Microbiol Rep. 2013 Apr;5(2):252-62. doi: 10.1111/1758-2229.12009. Epub 2012 Nov 15.


Regulation of proteorhodopsin gene expression by nutrient limitation in the marine bacterium Vibrio sp. AND4.

Akram N, Palovaara J, Forsberg J, Lindh MV, Milton DL, Luo H, González JM, Pinhassi J.

Environ Microbiol. 2013 May;15(5):1400-15. doi: 10.1111/1462-2920.12085. Epub 2013 Feb 5.


Microbial diversity in a continuous system based on rice husks for biodegradation of the azo dyes Reactive Red 2 and Reactive Black 5.

Forss J, Pinhassi J, Lindh M, Welander U.

Bioresour Technol. 2013 Feb;130:681-8. doi: 10.1016/j.biortech.2012.12.097. Epub 2012 Dec 20.


Ecology of marine Bacteroidetes: a comparative genomics approach.

Fernández-Gómez B, Richter M, Schüler M, Pinhassi J, Acinas SG, González JM, Pedrós-Alió C.

ISME J. 2013 May;7(5):1026-37. doi: 10.1038/ismej.2012.169. Epub 2013 Jan 10.


Prokaryotic community structure and respiration during long-term incubations.

Baltar F, Lindh MV, Parparov A, Berman T, Pinhassi J.

Microbiologyopen. 2012 Jun;1(2):214-24. doi: 10.1002/mbo3.25.


Structuring of bacterioplankton communities by specific dissolved organic carbon compounds.

Gómez-Consarnau L, Lindh MV, Gasol JM, Pinhassi J.

Environ Microbiol. 2012 Sep;14(9):2361-78. doi: 10.1111/j.1462-2920.2012.02804.x. Epub 2012 Jun 15.


Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. strain MED134.

González JM, Pinhassi J, Fernández-Gómez B, Coll-Lladó M, González-Velázquez M, Puigbò P, Jaenicke S, Gómez-Consarnau L, Fernàndez-Guerra A, Goesmann A, Pedrós-Alió C.

Appl Environ Microbiol. 2011 Dec;77(24):8676-86. doi: 10.1128/AEM.06152-11. Epub 2011 Oct 14.


DNA phosphorothioation is widespread and quantized in bacterial genomes.

Wang L, Chen S, Vergin KL, Giovannoni SJ, Chan SW, DeMott MS, Taghizadeh K, Cordero OX, Cutler M, Timberlake S, Alm EJ, Polz MF, Pinhassi J, Deng Z, Dedon PC.

Proc Natl Acad Sci U S A. 2011 Feb 15;108(7):2963-8. doi: 10.1073/pnas.1017261108. Epub 2011 Feb 1.


Leucine-to-carbon empirical conversion factor experiments: does bacterial community structure have an influence?

Alonso-Sáez L, Pinhassi J, Pernthaler J, Gasol JM.

Environ Microbiol. 2010 Nov;12(11):2988-97. doi: 10.1111/j.1462-2920.2010.02276.x.


Proteorhodopsin phototrophy promotes survival of marine bacteria during starvation.

Gómez-Consarnau L, Akram N, Lindell K, Pedersen A, Neutze R, Milton DL, González JM, Pinhassi J.

PLoS Biol. 2010 Apr 27;8(4):e1000358. doi: 10.1371/journal.pbio.1000358.


Kinneretia asaccharophila gen. nov., sp. nov., isolated from a freshwater lake, a member of the Rubrivivax branch of the family Comamonadaceae.

Gomila M, Pinhassi J, Falsen E, Moore ER, Lalucat J.

Int J Syst Evol Microbiol. 2010 Apr;60(Pt 4):809-14. doi: 10.1099/ijs.0.011478-0. Epub 2009 Aug 6.


Winogradskyella rapida sp. nov., isolated from protein-enriched seawater.

Pinhassi J, Nedashkovskaya OI, Hagström A, Vancanneyt M.

Int J Syst Evol Microbiol. 2009 Sep;59(Pt 9):2180-4. doi: 10.1099/ijs.0.008334-0. Epub 2009 Jul 15.


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