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Items: 1 to 50 of 258


Quantifying the impact of public omics data.

Perez-Riverol Y, Zorin A, Dass G, Vu MT, Xu P, Glont M, Vizcaíno JA, Jarnuczak AF, Petryszak R, Ping P, Hermjakob H.

Nat Commun. 2019 Aug 5;10(1):3512. doi: 10.1038/s41467-019-11461-w.


A Novel Method for Predicting Disease-Associated LncRNA-MiRNA Pairs Based on the Higher-Order Orthogonal Iteration.

Xuan Z, Feng X, Yu J, Ping P, Zhao H, Zhu X, Wang L.

Comput Math Methods Med. 2019 May 2;2019:7614850. doi: 10.1155/2019/7614850. eCollection 2019.


Hydrocellular Foam Versus Hydrocolloid Plate in the Prevention of Pressure Injuries.

da Silva Augusto F, Blanes L, Ping PZX, Saito CMM, Masako Ferreira L.

Wounds. 2019 Aug;31(8):193-199. Epub 2019 May 31.


Compact polarization beam splitter assisted by subwavelength grating in triple-waveguide directional coupler.

Huang T, Xie Y, Wu Y, Cheng Z, Zeng S, Ping PS.

Appl Opt. 2019 Mar 20;58(9):2264-2268. doi: 10.1364/AO.58.002264.


Cloud-Based Phrase Mining and Analysis of User-Defined Phrase-Category Association in Biomedical Publications.

Sigdel D, Kyi V, Zhang A, Setty SP, Liem DA, Shi Y, Wang X, Shen J, Wang W, Han J, Ping P.

J Vis Exp. 2019 Feb 23;(144). doi: 10.3791/59108.


Unsupervised classification of multi-omics data during cardiac remodeling using deep learning.

Chung NC, Mirza B, Choi H, Wang J, Wang D, Ping P, Wang W.

Methods. 2019 Mar 7. pii: S1046-2023(18)30359-1. doi: 10.1016/j.ymeth.2019.03.004. [Epub ahead of print]


Machine Learning and Integrative Analysis of Biomedical Big Data.

Mirza B, Wang W, Wang J, Choi H, Chung NC, Ping P.

Genes (Basel). 2019 Jan 28;10(2). pii: E87. doi: 10.3390/genes10020087. Review.


Convergences of Life Sciences and Engineering in Understanding and Treating Heart Failure.

Berry JL, Zhu W, Tang YL, Krishnamurthy P, Ge Y, Cooke JP, Chen Y, Garry DJ, Yang HT, Rajasekaran NS, Koch WJ, Li S, Domae K, Qin G, Cheng K, Kamp TJ, Ye L, Hu S, Ogle BM, Rogers JM, Abel ED, Davis ME, Prabhu SD, Liao R, Pu WT, Wang Y, Ping P, Bursac N, Vunjak-Novakovic G, Wu JC, Bolli R, Menasché P, Zhang J.

Circ Res. 2019 Jan 4;124(1):161-169. doi: 10.1161/CIRCRESAHA.118.314216.


A reference set of curated biomedical data and metadata from clinical case reports.

Caufield JH, Zhou Y, Garlid AO, Setty SP, Liem DA, Cao Q, Lee JM, Murali S, Spendlove S, Wang W, Zhang L, Sun Y, Bui A, Hermjakob H, Watson KE, Ping P.

Sci Data. 2018 Nov 20;5:180258. doi: 10.1038/sdata.2018.258.


Analysis for the Influence of ABR Sensitivity on PTT-Based Cuff-Less Blood Pressure Estimation before and after Exercise.

Xu Y, Ping P, Wang D, Zhang W.

J Healthc Eng. 2018 Oct 8;2018:5396030. doi: 10.1155/2018/5396030. eCollection 2018.


Novel 3D Network Architectured Hybrid Aerogel Comprising Epoxy, Graphene, and Hydroxylated Boron Nitride Nanosheets.

Yang W, Wang NN, Ping P, Yuen AC, Li A, Zhu SE, Wang LL, Wu J, Chen TB, Si JY, Rao BD, Lu HD, Chan QN, Yeoh GH.

ACS Appl Mater Interfaces. 2018 Nov 21;10(46):40032-40043. doi: 10.1021/acsami.8b15301. Epub 2018 Nov 12.


Murine PAIP1 stimulates translation of spermiogenic mRNAs stored by YBX2 via its interaction with YBX2†.

He Y, Lin Y, Zhu Y, Ping P, Wang G, Sun F.

Biol Reprod. 2019 Feb 1;100(2):561-572. doi: 10.1093/biolre/ioy213.


A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts.

Caufield JH, Liem DA, Garlid AO, Zhou Y, Watson K, Bui AAT, Wang W, Ping P.

J Vis Exp. 2018 Sep 20;(139). doi: 10.3791/58392.


Integrated Dissection of Cysteine Oxidative Post-translational Modification Proteome During Cardiac Hypertrophy.

Wang J, Choi H, Chung NC, Cao Q, Ng DCM, Mirza B, Scruggs SB, Wang D, Garlid AO, Ping P.

J Proteome Res. 2018 Dec 7;17(12):4243-4257. doi: 10.1021/acs.jproteome.8b00372. Epub 2018 Aug 31.


Quantitative temporal analysis of protein dynamics in cardiac remodeling.

McClatchy DB, Ma Y, Liem DA, Ng DCM, Ping P, Yates JR 3rd.

J Mol Cell Cardiol. 2018 Aug;121:163-172. doi: 10.1016/j.yjmcc.2018.07.126. Epub 2018 Jul 19.


A Novel Method for LncRNA-Disease Association Prediction Based on an lncRNA-Disease Association Network.

Ping P, Wang L, Kuang L, Ye S, Iqbal MFB, Pei T.

IEEE/ACM Trans Comput Biol Bioinform. 2019 Mar-Apr;16(2):688-693. doi: 10.1109/TCBB.2018.2827373. Epub 2018 Apr 16.


A Novel Probability Model for LncRNA⁻Disease Association Prediction Based on the Naïve Bayesian Classifier.

Yu J, Ping P, Wang L, Kuang L, Li X, Wu Z.

Genes (Basel). 2018 Jul 8;9(7). pii: E345. doi: 10.3390/genes9070345.


Sensitivity Enhancement in Surface Plasmon Resonance Biochemical Sensor Based on Transition Metal Dichalcogenides/Graphene Heterostructure.

Zhao X, Huang T, Ping PS, Wu X, Huang P, Pan J, Wu Y, Cheng Z.

Sensors (Basel). 2018 Jun 27;18(7). pii: E2056. doi: 10.3390/s18072056.


Brain Natriuretic Peptide and Its Biochemical, Analytical, and Clinical Issues in Heart Failure: A Narrative Review.

Fu S, Ping P, Zhu Q, Ye P, Luo L.

Front Physiol. 2018 Jun 5;9:692. doi: 10.3389/fphys.2018.00692. eCollection 2018. Review.


A Novel Model for Predicting Associations between Diseases and LncRNA-miRNA Pairs Based on a Newly Constructed Bipartite Network.

Zhou S, Xuan Z, Wang L, Ping P, Pei T.

Comput Math Methods Med. 2018 May 6;2018:6789089. doi: 10.1155/2018/6789089. eCollection 2018.


Phrase mining of textual data to analyze extracellular matrix protein patterns across cardiovascular disease.

Liem DA, Murali S, Sigdel D, Shi Y, Wang X, Shen J, Choi H, Caufield JH, Wang W, Ping P, Han J.

Am J Physiol Heart Circ Physiol. 2018 Oct 1;315(4):H910-H924. doi: 10.1152/ajpheart.00175.2018. Epub 2018 May 18.


Imsnc761 and DDX6 synergistically suppress cell proliferation and promote apoptosis via p53 in testicular embryonal carcinoma cells.

Duan Z, Ping P, Wang G, Zhang X, Sun F.

Biosci Rep. 2018 Jul 2;38(4). pii: BSR20180271. doi: 10.1042/BSR20180271. Print 2018 Aug 31.


Biomedical Informatics on the Cloud: A Treasure Hunt for Advancing Cardiovascular Medicine.

Ping P, Hermjakob H, Polson JS, Benos PV, Wang W.

Circ Res. 2018 Apr 27;122(9):1290-1301. doi: 10.1161/CIRCRESAHA.117.310967. Review.


Prediction of microRNA-disease associations based on distance correlation set.

Zhao H, Kuang L, Wang L, Ping P, Xuan Z, Pei T, Wu Z.

BMC Bioinformatics. 2018 Apr 17;19(1):141. doi: 10.1186/s12859-018-2146-x.


The expression of the new epididymal luminal protein of PDZ domain containing 1 is decreased in asthenozoospermia.

Liang AJ, Wang GS, Ping P, Hu SG, Lin Y, Ma Y, Duan ZZ, Wang HS, Sun F.

Asian J Androl. 2018 Mar-Apr;20(2):154-159. doi: 10.4103/aja.aja_65_17.


Reactome graph database: Efficient access to complex pathway data.

Fabregat A, Korninger F, Viteri G, Sidiropoulos K, Marin-Garcia P, Ping P, Wu G, Stein L, D'Eustachio P, Hermjakob H.

PLoS Comput Biol. 2018 Jan 29;14(1):e1005968. doi: 10.1371/journal.pcbi.1005968. eCollection 2018 Jan.


Guidelines for experimental models of myocardial ischemia and infarction.

Lindsey ML, Bolli R, Canty JM Jr, Du XJ, Frangogiannis NG, Frantz S, Gourdie RG, Holmes JW, Jones SP, Kloner RA, Lefer DJ, Liao R, Murphy E, Ping P, Przyklenk K, Recchia FA, Schwartz Longacre L, Ripplinger CM, Van Eyk JE, Heusch G.

Am J Physiol Heart Circ Physiol. 2018 Apr 1;314(4):H812-H838. doi: 10.1152/ajpheart.00335.2017. Epub 2018 Jan 12.


Synthesis, secretion, function, metabolism and application of natriuretic peptides in heart failure.

Fu S, Ping P, Wang F, Luo L.

J Biol Eng. 2018 Jan 12;12:2. doi: 10.1186/s13036-017-0093-0. eCollection 2018. Review.


Integrated omics dissection of proteome dynamics during cardiac remodeling.

Lau E, Cao Q, Lam MPY, Wang J, Ng DCM, Bleakley BJ, Lee JM, Liem DA, Wang D, Hermjakob H, Ping P.

Nat Commun. 2018 Jan 9;9(1):120. doi: 10.1038/s41467-017-02467-3.


Lipophagy Contributes to Testosterone Biosynthesis in Male Rat Leydig Cells.

Ma Y, Zhou Y, Zhu YC, Wang SQ, Ping P, Chen XF.

Endocrinology. 2018 Feb 1;159(2):1119-1129. doi: 10.1210/en.2017-03020.


Association between preoperative peripheral blood mononuclear cell gene expression profiles, early postoperative organ function recovery potential and long-term survival in advanced heart failure patients undergoing mechanical circulatory support.

Bondar G, Togashi R, Cadeiras M, Schaenman J, Cheng RK, Masukawa L, Hai J, Bao TM, Chu D, Chang E, Bakir M, Kupiec-Weglinski S, Groysberg V, Grogan T, Meltzer J, Kwon M, Rossetti M, Elashoff D, Reed E, Ping PP, Deng MC.

PLoS One. 2017 Dec 13;12(12):e0189420. doi: 10.1371/journal.pone.0189420. eCollection 2017.


Contamination Event Detection with Multivariate Time-Series Data in Agricultural Water Monitoring.

Mao Y, Qi H, Ping P, Li X.

Sensors (Basel). 2017 Dec 4;17(12). pii: E2806. doi: 10.3390/s17122806.


Reactome diagram viewer: data structures and strategies to boost performance.

Fabregat A, Sidiropoulos K, Viteri G, Marin-Garcia P, Ping P, Stein L, D'Eustachio P, Hermjakob H.

Bioinformatics. 2018 Apr 1;34(7):1208-1214. doi: 10.1093/bioinformatics/btx752.


Outer dense fibers stabilize the axoneme to maintain sperm motility.

Zhao W, Li Z, Ping P, Wang G, Yuan X, Sun F.

J Cell Mol Med. 2018 Mar;22(3):1755-1768. doi: 10.1111/jcmm.13457. Epub 2017 Nov 23.


Reactome enhanced pathway visualization.

Sidiropoulos K, Viteri G, Sevilla C, Jupe S, Webber M, Orlic-Milacic M, Jassal B, May B, Shamovsky V, Duenas C, Rothfels K, Matthews L, Song H, Stein L, Haw R, D'Eustachio P, Ping P, Hermjakob H, Fabregat A.

Bioinformatics. 2017 Nov 1;33(21):3461-3467. doi: 10.1093/bioinformatics/btx441.


An Adaptive Trajectory Clustering Method Based on Grid and Density in Mobile Pattern Analysis.

Mao Y, Zhong H, Qi H, Ping P, Li X.

Sensors (Basel). 2017 Sep 2;17(9). pii: E2013. doi: 10.3390/s17092013.


High-Resolution Mapping of Chromatin Conformation in Cardiac Myocytes Reveals Structural Remodeling of the Epigenome in Heart Failure.

Rosa-Garrido M, Chapski DJ, Schmitt AD, Kimball TH, Karbassi E, Monte E, Balderas E, Pellegrini M, Shih TT, Soehalim E, Liem D, Ping P, Galjart NJ, Ren S, Wang Y, Ren B, Vondriska TM.

Circulation. 2017 Oct 24;136(17):1613-1625. doi: 10.1161/CIRCULATIONAHA.117.029430. Epub 2017 Aug 11.


Flow-Responsive Vascular Endothelial Growth Factor Receptor-Protein Kinase C Isoform Epsilon Signaling Mediates Glycolytic Metabolites for Vascular Repair.

Baek KI, Li R, Jen N, Choi H, Kaboodrangi A, Ping P, Liem D, Beebe T, Hsiai TK.

Antioxid Redox Signal. 2018 Jan 1;28(1):31-43. doi: 10.1089/ars.2017.7044. Epub 2017 Sep 21.


Multicenter study of genetic abnormalities associated with severe oligospermia and non-obstructive azoospermia.

Xie C, Chen X, Liu Y, Wu Z, Ping P.

J Int Med Res. 2018 Jan;46(1):107-114. doi: 10.1177/0300060517718771. Epub 2017 Jul 21.


Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop.

Jagodnik KM, Koplev S, Jenkins SL, Ohno-Machado L, Paten B, Schurer SC, Dumontier M, Verborgh R, Bui A, Ping P, McKenna NJ, Madduri R, Pillai A, Ma'ayan A.

J Biomed Inform. 2017 Jul;71:49-57. doi: 10.1016/j.jbi.2017.05.006. Epub 2017 May 10.


Discovering and linking public omics data sets using the Omics Discovery Index.

Perez-Riverol Y, Bai M, da Veiga Leprevost F, Squizzato S, Park YM, Haug K, Carroll AJ, Spalding D, Paschall J, Wang M, Del-Toro N, Ternent T, Zhang P, Buso N, Bandeira N, Deutsch EW, Campbell DS, Beavis RC, Salek RM, Sarkans U, Petryszak R, Keays M, Fahy E, Sud M, Subramaniam S, Barbera A, Jiménez RC, Nesvizhskii AI, Sansone SA, Steinbeck C, Lopez R, Vizcaíno JA, Ping P, Hermjakob H.

Nat Biotechnol. 2017 May 9;35(5):406-409. doi: 10.1038/nbt.3790. No abstract available.


Individualized Knowledge Graph: A Viable Informatics Path to Precision Medicine.

Ping P, Watson K, Han J, Bui A.

Circ Res. 2017 Mar 31;120(7):1078-1080. doi: 10.1161/CIRCRESAHA.116.310024. No abstract available.


HSPA5 Gene encoding Hsp70 chaperone BiP in the endoplasmic reticulum.

Wang J, Lee J, Liem D, Ping P.

Gene. 2017 Jun 30;618:14-23. doi: 10.1016/j.gene.2017.03.005. Epub 2017 Mar 7. Review.


Proteomics Research in Cardiovascular Medicine and Biomarker Discovery.

Lam MP, Ping P, Murphy E.

J Am Coll Cardiol. 2016 Dec 27;68(25):2819-2830. doi: 10.1016/j.jacc.2016.10.031. Review.


Equipping Physiologists with an Informatics Tool Chest: Toward an Integerated Mitochondrial Phenome.

Garlid AO, Polson JS, Garlid KD, Hermjakob H, Ping P.

Handb Exp Pharmacol. 2017;240:377-401. doi: 10.1007/164_2016_93. Review.


Cardiovascular proteomics in the era of big data: experimental and computational advances.

Lam MP, Lau E, Ng DC, Wang D, Ping P.

Clin Proteomics. 2016 Dec 5;13:23. eCollection 2016. Review.


Data-Driven Approach To Determine Popular Proteins for Targeted Proteomics Translation of Six Organ Systems.

Lam MP, Venkatraman V, Xing Y, Lau E, Cao Q, Ng DC, Su AI, Ge J, Van Eyk JE, Ping P.

J Proteome Res. 2016 Nov 4;15(11):4126-4134. Epub 2016 Jul 19.


Connecting the Dots: From Big Data to Healthy Heart.

Lau E, Watson KE, Ping P.

Circulation. 2016 Aug 2;134(5):362-4. doi: 10.1161/CIRCULATIONAHA.116.021892. No abstract available.

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