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Items: 42

1.

First Estimation of the Spontaneous Mutation Rate in Diatoms.

Krasovec M, Sanchez-Brosseau S, Piganeau G.

Genome Biol Evol. 2019 Jul 1;11(7):1829-1837. doi: 10.1093/gbe/evz130.

2.

Genome Analyses of the Microalga Picochlorum Provide Insights into the Evolution of Thermotolerance in the Green Lineage.

Krasovec M, Vancaester E, Rombauts S, Bucchini F, Yau S, Hemon C, Lebredonchel H, Grimsley N, Moreau H, Sanchez-Brosseau S, Vandepoele K, Piganeau G.

Genome Biol Evol. 2018 Sep 1;10(9):2347-2365. doi: 10.1093/gbe/evy167.

3.

Fish larval recruitment to reefs is a thyroid hormone-mediated metamorphosis sensitive to the pesticide chlorpyrifos.

Holzer G, Besson M, Lambert A, François L, Barth P, Gillet B, Hughes S, Piganeau G, Leulier F, Viriot L, Lecchini D, Laudet V.

Elife. 2017 Oct 30;6. pii: e27595. doi: 10.7554/eLife.27595.

4.

Population genomics of picophytoplankton unveils novel chromosome hypervariability.

Blanc-Mathieu R, Krasovec M, Hebrard M, Yau S, Desgranges E, Martin J, Schackwitz W, Kuo A, Salin G, Donnadieu C, Desdevises Y, Sanchez-Ferandin S, Moreau H, Rivals E, Grigoriev IV, Grimsley N, Eyre-Walker A, Piganeau G.

Sci Adv. 2017 Jul 5;3(7):e1700239. doi: 10.1126/sciadv.1700239. eCollection 2017 Jul.

5.

Spontaneous Mutation Rate in the Smallest Photosynthetic Eukaryotes.

Krasovec M, Eyre-Walker A, Sanchez-Ferandin S, Piganeau G.

Mol Biol Evol. 2017 Jul 1;34(7):1770-1779. doi: 10.1093/molbev/msx119.

6.

A Viral Immunity Chromosome in the Marine Picoeukaryote, Ostreococcus tauri.

Yau S, Hemon C, Derelle E, Moreau H, Piganeau G, Grimsley N.

PLoS Pathog. 2016 Oct 27;12(10):e1005965. doi: 10.1371/journal.ppat.1005965. eCollection 2016 Oct.

7.

Marinobacter Dominates the Bacterial Community of the Ostreococcus tauri Phycosphere in Culture.

Lupette J, Lami R, Krasovec M, Grimsley N, Moreau H, Piganeau G, Sanchez-Ferandin S.

Front Microbiol. 2016 Sep 7;7:1414. doi: 10.3389/fmicb.2016.01414. eCollection 2016.

8.

Fitness Effects of Spontaneous Mutations in Picoeukaryotic Marine Green Algae.

Krasovec M, Eyre-Walker A, Grimsley N, Salmeron C, Pecqueur D, Piganeau G, Sanchez-Ferandin S.

G3 (Bethesda). 2016 Jul 7;6(7):2063-71. doi: 10.1534/g3.116.029769.

9.

The rate of adaptive evolution in animal mitochondria.

James JE, Piganeau G, Eyre-Walker A.

Mol Ecol. 2016 Jan;25(1):67-78. doi: 10.1111/mec.13475. Epub 2015 Dec 17. Review.

10.

An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies.

Blanc-Mathieu R, Verhelst B, Derelle E, Rombauts S, Bouget FY, Carré I, Château A, Eyre-Walker A, Grimsley N, Moreau H, Piégu B, Rivals E, Schackwitz W, Van de Peer Y, Piganeau G.

BMC Genomics. 2014 Dec 13;15:1103. doi: 10.1186/1471-2164-15-1103.

11.

Bacteria in Ostreococcus tauri cultures - friends, foes or hitchhikers?

Abby SS, Touchon M, De Jode A, Grimsley N, Piganeau G.

Front Microbiol. 2014 Nov 7;5:505. doi: 10.3389/fmicb.2014.00505. eCollection 2014.

12.

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing.

Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, Amaral-Zettler LA, Armbrust EV, Archibald JM, Bharti AK, Bell CJ, Beszteri B, Bidle KD, Cameron CT, Campbell L, Caron DA, Cattolico RA, Collier JL, Coyne K, Davy SK, Deschamps P, Dyhrman ST, Edvardsen B, Gates RD, Gobler CJ, Greenwood SJ, Guida SM, Jacobi JL, Jakobsen KS, James ER, Jenkins B, John U, Johnson MD, Juhl AR, Kamp A, Katz LA, Kiene R, Kudryavtsev A, Leander BS, Lin S, Lovejoy C, Lynn D, Marchetti A, McManus G, Nedelcu AM, Menden-Deuer S, Miceli C, Mock T, Montresor M, Moran MA, Murray S, Nadathur G, Nagai S, Ngam PB, Palenik B, Pawlowski J, Petroni G, Piganeau G, Posewitz MC, Rengefors K, Romano G, Rumpho ME, Rynearson T, Schilling KB, Schroeder DC, Simpson AG, Slamovits CH, Smith DR, Smith GJ, Smith SR, Sosik HM, Stief P, Theriot E, Twary SN, Umale PE, Vaulot D, Wawrik B, Wheeler GL, Wilson WH, Xu Y, Zingone A, Worden AZ.

PLoS Biol. 2014 Jun 24;12(6):e1001889. doi: 10.1371/journal.pbio.1001889. eCollection 2014 Jun. No abstract available.

13.

Morphology, genome plasticity, and phylogeny in the genus ostreococcus reveal a cryptic species, O. mediterraneus sp. nov. (Mamiellales, Mamiellophyceae).

Subirana L, Péquin B, Michely S, Escande ML, Meilland J, Derelle E, Marin B, Piganeau G, Desdevises Y, Moreau H, Grimsley NH.

Protist. 2013 Sep;164(5):643-59. doi: 10.1016/j.protis.2013.06.002. Epub 2013 Jul 24.

PMID:
23892412
14.

Organellar inheritance in the green lineage: insights from Ostreococcus tauri.

Blanc-Mathieu R, Sanchez-Ferandin S, Eyre-Walker A, Piganeau G.

Genome Biol Evol. 2013;5(8):1503-11. doi: 10.1093/gbe/evt106.

15.

pico-PLAZA, a genome database of microbial photosynthetic eukaryotes.

Vandepoele K, Van Bel M, Richard G, Van Landeghem S, Verhelst B, Moreau H, Van de Peer Y, Grimsley N, Piganeau G.

Environ Microbiol. 2013 Aug;15(8):2147-53. doi: 10.1111/1462-2920.12174. Epub 2013 Jul 4.

PMID:
23826978
16.

Evolution of codon usage in the smallest photosynthetic eukaryotes and their giant viruses.

Michely S, Toulza E, Subirana L, John U, Cognat V, Maréchal-Drouard L, Grimsley N, Moreau H, Piganeau G.

Genome Biol Evol. 2013;5(5):848-59. doi: 10.1093/gbe/evt053.

17.

Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage.

Moreau H, Verhelst B, Couloux A, Derelle E, Rombauts S, Grimsley N, Van Bel M, Poulain J, Katinka M, Hohmann-Marriott MF, Piganeau G, Rouzé P, Da Silva C, Wincker P, Van de Peer Y, Vandepoele K.

Genome Biol. 2012 Aug 24;13(8):R74. doi: 10.1186/gb-2012-13-8-r74.

18.

Metagenomes of the picoalga Bathycoccus from the Chile coastal upwelling.

Vaulot D, Lepère C, Toulza E, De la Iglesia R, Poulain J, Gaboyer F, Moreau H, Vandepoele K, Ulloa O, Gavory F, Piganeau G.

PLoS One. 2012;7(6):e39648. doi: 10.1371/journal.pone.0039648. Epub 2012 Jun 22.

19.

Analysis of the global ocean sampling (GOS) project for trends in iron uptake by surface ocean microbes.

Toulza E, Tagliabue A, Blain S, Piganeau G.

PLoS One. 2012;7(2):e30931. doi: 10.1371/journal.pone.0030931. Epub 2012 Feb 17.

20.

Genome diversity in the smallest marine photosynthetic eukaryotes.

Piganeau G, Grimsley N, Moreau H.

Res Microbiol. 2011 Jul-Aug;162(6):570-7. doi: 10.1016/j.resmic.2011.04.005. Epub 2011 Apr 21. Review.

PMID:
21540104
21.

How and why DNA barcodes underestimate the diversity of microbial eukaryotes.

Piganeau G, Eyre-Walker A, Jancek S, Grimsley N, Moreau H.

PLoS One. 2011 Feb 10;6(2):e16342. doi: 10.1371/journal.pone.0016342. Erratum in: PLoS One. 2012;7(4): doi/10.1371/annotation/c12aac06-71d2-4749-91de-46c458e7a4eb. Jancek, Severine [added].

22.

Marine prasinovirus genomes show low evolutionary divergence and acquisition of protein metabolism genes by horizontal gene transfer.

Moreau H, Piganeau G, Desdevises Y, Cooke R, Derelle E, Grimsley N.

J Virol. 2010 Dec;84(24):12555-63. doi: 10.1128/JVI.01123-10. Epub 2010 Sep 22.

23.

Cryptic sex in the smallest eukaryotic marine green alga.

Grimsley N, Péquin B, Bachy C, Moreau H, Piganeau G.

Mol Biol Evol. 2010 Jan;27(1):47-54. doi: 10.1093/molbev/msp203.

PMID:
19734297
24.

Unravelling cis-regulatory elements in the genome of the smallest photosynthetic eukaryote: phylogenetic footprinting in Ostreococcus.

Piganeau G, Vandepoele K, Gourbière S, Van de Peer Y, Moreau H.

J Mol Evol. 2009 Sep;69(3):249-59. doi: 10.1007/s00239-009-9271-0. Epub 2009 Aug 20.

PMID:
19693423
25.

Evidence for variation in the effective population size of animal mitochondrial DNA.

Piganeau G, Eyre-Walker A.

PLoS One. 2009;4(2):e4396. doi: 10.1371/journal.pone.0004396. Epub 2009 Feb 9.

26.

Clues about the genetic basis of adaptation emerge from comparing the proteomes of two Ostreococcus ecotypes (Chlorophyta, Prasinophyceae).

Jancek S, Gourbière S, Moreau H, Piganeau G.

Mol Biol Evol. 2008 Nov;25(11):2293-300. doi: 10.1093/molbev/msn168. Epub 2008 Aug 4.

PMID:
18678753
27.

Life-cycle and genome of OtV5, a large DNA virus of the pelagic marine unicellular green alga Ostreococcus tauri.

Derelle E, Ferraz C, Escande ML, Eychenié S, Cooke R, Piganeau G, Desdevises Y, Bellec L, Moreau H, Grimsley N.

PLoS One. 2008 May 28;3(5):e2250. doi: 10.1371/journal.pone.0002250.

28.

Picoeukaryotic sequences in the Sargasso sea metagenome.

Piganeau G, Desdevises Y, Derelle E, Moreau H.

Genome Biol. 2008 Jan 7;9(1):R5. doi: 10.1186/gb-2008-9-1-r5.

29.
30.

The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation.

Palenik B, Grimwood J, Aerts A, Rouzé P, Salamov A, Putnam N, Dupont C, Jorgensen R, Derelle E, Rombauts S, Zhou K, Otillar R, Merchant SS, Podell S, Gaasterland T, Napoli C, Gendler K, Manuell A, Tai V, Vallon O, Piganeau G, Jancek S, Heijde M, Jabbari K, Bowler C, Lohr M, Robbens S, Werner G, Dubchak I, Pazour GJ, Ren Q, Paulsen I, Delwiche C, Schmutz J, Rokhsar D, Van de Peer Y, Moreau H, Grigoriev IV.

Proc Natl Acad Sci U S A. 2007 May 1;104(18):7705-10. Epub 2007 Apr 25.

31.

Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.

Derelle E, Ferraz C, Rombauts S, Rouzé P, Worden AZ, Robbens S, Partensky F, Degroeve S, Echeynié S, Cooke R, Saeys Y, Wuyts J, Jabbari K, Bowler C, Panaud O, Piégu B, Ball SG, Ral JP, Bouget FY, Piganeau G, De Baets B, Picard A, Delseny M, Demaille J, Van de Peer Y, Moreau H.

Proc Natl Acad Sci U S A. 2006 Aug 1;103(31):11647-52. Epub 2006 Jul 25.

32.

An investigation of the variation in the transition bias among various animal mitochondrial DNA.

Belle EM, Piganeau G, Gardner M, Eyre-Walker A.

Gene. 2005 Aug 1;355:58-66.

PMID:
16039074
33.

A broad survey of recombination in animal mitochondria.

Piganeau G, Gardner M, Eyre-Walker A.

Mol Biol Evol. 2004 Dec;21(12):2319-25. Epub 2004 Sep 1.

PMID:
15342796
34.

Selection pressure-driven evolution of the Epstein-Barr virus-encoded oncogene LMP1 in virus isolates from Southeast Asia.

Burrows JM, Bromham L, Woolfit M, Piganeau G, Tellam J, Connolly G, Webb N, Poulsen L, Cooper L, Burrows SR, Moss DJ, Haryana SM, Ng M, Nicholls JM, Khanna R.

J Virol. 2004 Jul;78(13):7131-7.

35.

A reanalysis of the indirect evidence for recombination in human mitochondrial DNA.

Piganeau G, Eyre-Walker A.

Heredity (Edinb). 2004 Apr;92(4):282-8.

36.

Estimating the distribution of fitness effects from DNA sequence data: implications for the molecular clock.

Piganeau G, Eyre-Walker A.

Proc Natl Acad Sci U S A. 2003 Sep 2;100(18):10335-40. Epub 2003 Aug 18.

37.

Vanishing GC-rich isochores in mammalian genomes.

Duret L, Semon M, Piganeau G, Mouchiroud D, Galtier N.

Genetics. 2002 Dec;162(4):1837-47.

39.

Expected relationship between the silent substitution rate and the GC content: implications for the evolution of isochores.

Piganeau G, Mouchiroud D, Duret L, Gautier C.

J Mol Evol. 2002 Jan;54(1):129-33.

PMID:
11734906
40.

Multiplicative versus additive selection in relation to genome evolution: a simulation study.

Piganeau G, Westrelin R, Tourancheau B, Gautier C.

Genet Res. 2001 Oct;78(2):171-5.

PMID:
11732094
41.

GC-content evolution in mammalian genomes: the biased gene conversion hypothesis.

Galtier N, Piganeau G, Mouchiroud D, Duret L.

Genetics. 2001 Oct;159(2):907-11. No abstract available.

42.

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