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Items: 13

1.

Open Targets Platform: new developments and updates two years on.

Carvalho-Silva D, Pierleoni A, Pignatelli M, Ong C, Fumis L, Karamanis N, Carmona M, Faulconbridge A, Hercules A, McAuley E, Miranda A, Peat G, Spitzer M, Barrett J, Hulcoop DG, Papa E, Koscielny G, Dunham I.

Nucleic Acids Res. 2019 Jan 8;47(D1):D1056-D1065. doi: 10.1093/nar/gky1133.

2.

TCTN2: a novel tumor marker with oncogenic properties.

Cano-Rodriguez D, Campagnoli S, Grandi A, Parri M, Camilli E, Song C, Jin B, Lacombe A, Pierleoni A, Bombaci M, Cordiglieri C, Ruiters MH, Viale G, Terracciano L, Sarmientos P, Abrignani S, Grandi G, Pileri P, Rots MG, Grifantini R.

Oncotarget. 2017 Aug 24;8(56):95256-95269. doi: 10.18632/oncotarget.20438. eCollection 2017 Nov 10.

3.

Open Targets: a platform for therapeutic target identification and validation.

Koscielny G, An P, Carvalho-Silva D, Cham JA, Fumis L, Gasparyan R, Hasan S, Karamanis N, Maguire M, Papa E, Pierleoni A, Pignatelli M, Platt T, Rowland F, Wankar P, Bento AP, Burdett T, Fabregat A, Forbes S, Gaulton A, Gonzalez CY, Hermjakob H, Hersey A, Jupe S, Kafkas Ş, Keays M, Leroy C, Lopez FJ, Magarinos MP, Malone J, McEntyre J, Munoz-Pomer Fuentes A, O'Donovan C, Papatheodorou I, Parkinson H, Palka B, Paschall J, Petryszak R, Pratanwanich N, Sarntivijal S, Saunders G, Sidiropoulos K, Smith T, Sondka Z, Stegle O, Tang YA, Turner E, Vaughan B, Vrousgou O, Watkins X, Martin MJ, Sanseau P, Vamathevan J, Birney E, Barrett J, Dunham I.

Nucleic Acids Res. 2017 Jan 4;45(D1):D985-D994. doi: 10.1093/nar/gkw1055. Epub 2016 Nov 29.

4.

Recombinant outer membrane vesicles carrying Chlamydia muridarum HtrA induce antibodies that neutralize chlamydial infection in vitro.

Bartolini E, Ianni E, Frigimelica E, Petracca R, Galli G, Berlanda Scorza F, Norais N, Laera D, Giusti F, Pierleoni A, Donati M, Cevenini R, Finco O, Grandi G, Grifantini R.

J Extracell Vesicles. 2013 May 6;2. doi: 10.3402/jev.v2i0.20181. eCollection 2013.

5.

A novel polyclonal antibody library for expression profiling of poorly characterized, membrane and secreted human proteins.

Grifantini R, Pagani M, Pierleoni A, Grandi A, Parri M, Campagnoli S, Pileri P, Cattaneo D, Canidio E, Pontillo A, De Camilli E, Bresciani A, Marinoni F, Pedrazzoli E, Nogarotto R, Abrignani S, Viale G, Sarmientos P, Grandi G.

J Proteomics. 2011 Dec 21;75(2):532-47. doi: 10.1016/j.jprot.2011.08.018. Epub 2011 Sep 5.

PMID:
21920474
6.

Improving the prediction of disulfide bonds in Eukaryotes with machine learning methods and protein subcellular localization.

Savojardo C, Fariselli P, Alhamdoosh M, Martelli PL, Pierleoni A, Casadio R.

Bioinformatics. 2011 Aug 15;27(16):2224-30. doi: 10.1093/bioinformatics/btr387. Epub 2011 Jun 29.

PMID:
21715467
7.

MemPype: a pipeline for the annotation of eukaryotic membrane proteins.

Pierleoni A, Indio V, Savojardo C, Fariselli P, Martelli PL, Casadio R.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W375-80. doi: 10.1093/nar/gkr282. Epub 2011 May 4.

8.

MemLoci: predicting subcellular localization of membrane proteins in eukaryotes.

Pierleoni A, Martelli PL, Casadio R.

Bioinformatics. 2011 May 1;27(9):1224-30. doi: 10.1093/bioinformatics/btr108. Epub 2011 Mar 2.

PMID:
21367869
9.

Sequence-based feature prediction and annotation of proteins.

Juncker AS, Jensen LJ, Pierleoni A, Bernsel A, Tress ML, Bork P, von Heijne G, Valencia A, Ouzounis CA, Casadio R, Brunak S.

Genome Biol. 2009 Feb 2;10(2):206. doi: 10.1186/gb-2009-10-2-206.

10.

PredGPI: a GPI-anchor predictor.

Pierleoni A, Martelli PL, Casadio R.

BMC Bioinformatics. 2008 Sep 23;9:392. doi: 10.1186/1471-2105-9-392.

11.

The prediction of protein subcellular localization from sequence: a shortcut to functional genome annotation.

Casadio R, Martelli PL, Pierleoni A.

Brief Funct Genomic Proteomic. 2008 Jan;7(1):63-73. doi: 10.1093/bfgp/eln003. Epub 2008 Feb 18. Review.

PMID:
18283051
12.

eSLDB: eukaryotic subcellular localization database.

Pierleoni A, Martelli PL, Fariselli P, Casadio R.

Nucleic Acids Res. 2007 Jan;35(Database issue):D208-12. Epub 2006 Nov 15.

13.

BaCelLo: a balanced subcellular localization predictor.

Pierleoni A, Martelli PL, Fariselli P, Casadio R.

Bioinformatics. 2006 Jul 15;22(14):e408-16.

PMID:
16873501

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