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Items: 25

1.

Mechanisms for Benzene Dissociation through the Excited State of T4 Lysozyme L99A Mutant.

Feher VA, Schiffer JM, Mermelstein DJ, Mih N, Pierce LCT, McCammon JA, Amaro RE.

Biophys J. 2019 Jan 22;116(2):205-214. doi: 10.1016/j.bpj.2018.09.035. Epub 2018 Dec 8.

PMID:
30606449
2.

Alternative DNA secondary structure formation affects RNA polymerase II promoter-proximal pausing in human.

Szlachta K, Thys RG, Atkin ND, Pierce LCT, Bekiranov S, Wang YH.

Genome Biol. 2018 Jul 12;19(1):89. doi: 10.1186/s13059-018-1463-8.

3.

Deep sequencing of 10,000 human genomes.

Telenti A, Pierce LC, Biggs WH, di Iulio J, Wong EH, Fabani MM, Kirkness EF, Moustafa A, Shah N, Xie C, Brewerton SC, Bulsara N, Garner C, Metzker G, Sandoval E, Perkins BA, Och FJ, Turpaz Y, Venter JC.

Proc Natl Acad Sci U S A. 2016 Oct 18;113(42):11901-11906. Epub 2016 Oct 4.

4.

Correction: Theoretical Insights Reveal Novel Motions in Csk's SH3 Domain That Control Kinase Activation.

Barkho S, Pierce LC, Li S, Adams JA, Jennings PA.

PLoS One. 2015 Jul 20;10(7):e0133801. doi: 10.1371/journal.pone.0133801. eCollection 2015. No abstract available.

5.

Environmental and chemotherapeutic agents induce breakage at genes involved in leukemia-causing gene rearrangements in human hematopoietic stem/progenitor cells.

Thys RG, Lehman CE, Pierce LC, Wang YH.

Mutat Res. 2015 Sep;779:86-95. doi: 10.1016/j.mrfmmm.2015.06.011. Epub 2015 Jun 27.

6.

Theoretical Insights Reveal Novel Motions in Csk's SH3 Domain That Control Kinase Activation.

Barkho S, Pierce LC, Li S, Adams JA, Jennings PA.

PLoS One. 2015 Jun 1;10(6):e0127724. doi: 10.1371/journal.pone.0127724. eCollection 2015. Erratum in: PLoS One. 2015;10(7):e0133801.

7.

DNA secondary structure at chromosomal fragile sites in human disease.

Thys RG, Lehman CE, Pierce LC, Wang YH.

Curr Genomics. 2015 Feb;16(1):60-70. doi: 10.2174/1389202916666150114223205.

8.

Impact of Hurricane Sandy on hospital emergency and dialysis services: a retrospective survey.

Lin CJ, Pierce LC, Roblin PM, Arquilla B.

Prehosp Disaster Med. 2014 Aug;29(4):374-9. doi: 10.1017/S1049023X14000715. Epub 2014 Jul 28.

PMID:
25068276
9.

Drug screening strategy for human membrane proteins: from NMR protein backbone structure to in silica- and NMR-screened hits.

Lindert S, Maslennikov I, Chiu EJ, Pierce LC, McCammon JA, Choe S.

Biochem Biophys Res Commun. 2014 Mar 21;445(4):724-33. doi: 10.1016/j.bbrc.2014.01.179. Epub 2014 Feb 10.

10.

Waterworks, a full-scale chemical exposure exercise: interrogating pediatric critical care surge capacity in an inner-city tertiary care medical center.

Shah VS, Pierce LC, Roblin P, Walker S, Sergio MN, Arquilla B.

Prehosp Disaster Med. 2014 Feb;29(1):100-6. doi: 10.1017/S1049023X13009096. Epub 2013 Dec 13.

PMID:
24330801
11.

DNA topoisomerases participate in fragility of the oncogene RET.

Dillon LW, Pierce LC, Lehman CE, Nikiforov YE, Wang YH.

PLoS One. 2013 Sep 11;8(9):e75741. doi: 10.1371/journal.pone.0075741. eCollection 2013.

12.

Distal loop flexibility of a regulatory domain modulates dynamics and activity of C-terminal SRC kinase (csk).

Barkho S, Pierce LC, McGlone ML, Li S, Woods VL Jr, Walker RC, Adams JA, Jennings PA.

PLoS Comput Biol. 2013;9(9):e1003188. doi: 10.1371/journal.pcbi.1003188. Epub 2013 Sep 5.

13.

Influence of N-myristylation and ligand binding on the flexibility of the catalytic subunit of protein kinase A.

Bastidas AC, Pierce LC, Walker RC, Johnson DA, Taylor SS.

Biochemistry. 2013 Sep 17;52(37):6368-79. doi: 10.1021/bi400575k. Epub 2013 Sep 4.

14.

Role of DNA secondary structures in fragile site breakage along human chromosome 10.

Dillon LW, Pierce LC, Ng MC, Wang YH.

Hum Mol Genet. 2013 Apr 1;22(7):1443-56. doi: 10.1093/hmg/dds561. Epub 2013 Jan 7.

15.

Routine Access to Millisecond Time Scale Events with Accelerated Molecular Dynamics.

Pierce LC, Salomon-Ferrer R, Augusto F de Oliveira C, McCammon JA, Walker RC.

J Chem Theory Comput. 2012 Sep 11;8(9):2997-3002. Epub 2012 Jul 27.

16.

Exploring the Photophysical Properties of Molecular Systems Using Excited State Accelerated ab Initio Molecular Dynamics.

Ortiz-Sánchez JM, Bucher D, Pierce LC, Markwick PR, McCammon JA.

J Chem Theory Comput. 2012 Aug 14;8(8):2752-2761. Epub 2012 Jun 28.

17.

The molecular dynamics of Trypanosoma brucei UDP-galactose 4'-epimerase: a drug target for African sleeping sickness.

Friedman AJ, Durrant JD, Pierce LC, McCorvie TJ, Timson DJ, McCammon JA.

Chem Biol Drug Des. 2012 Aug;80(2):173-81. doi: 10.1111/j.1747-0285.2012.01392.x. Epub 2012 May 2.

18.

Protecting High Energy Barriers: A New Equation to Regulate Boost Energy in Accelerated Molecular Dynamics Simulations.

Sinko W, de Oliveira CA, Pierce LC, McCammon JA.

J Chem Theory Comput. 2012 Jan 10;8(1):17-23. Epub 2011 Nov 21.

19.

Accelerating chemical reactions: exploring reactive free-energy surfaces using accelerated ab initio molecular dynamics.

Pierce LC, Markwick PR, McCammon JA, Doltsinis NL.

J Chem Phys. 2011 May 7;134(17):174107. doi: 10.1063/1.3581093.

20.

On the Use of Accelerated Molecular Dynamics to Enhance Configurational Sampling in Ab Initio Simulations.

Bucher D, Pierce LC, McCammon JA, Markwick PR.

J Chem Theory Comput. 2011 Apr 12;7(4):890-897. Epub 2011 Mar 4.

21.

Adaptive Accelerated Molecular Dynamics (Ad-AMD) Revealing the Molecular Plasticity of P450cam.

Markwick PR, Pierce LC, Goodin DB, McCammon JA.

J Phys Chem Lett. 2011 Feb 3;2(3):158-164. Epub 2011 Jan 7.

22.

Over half of breakpoints in gene pairs involved in cancer-specific recurrent translocations are mapped to human chromosomal fragile sites.

Burrow AA, Williams LE, Pierce LC, Wang YH.

BMC Genomics. 2009 Jan 30;10:59. doi: 10.1186/1471-2164-10-59.

23.

Clinical characteristics of aortic aneurysm and dissection as a cause of sudden death in outpatients.

Pierce LC, Courtney DM.

Am J Emerg Med. 2008 Nov;26(9):1042-6. doi: 10.1016/j.ajem.2007.12.014.

24.

Ancient temporal bone osteopathology.

Loveland CJ, Pierce LC, Gregg JB.

Ann Otol Rhinol Laryngol. 1990 Feb;99(2 Pt 1):146-54.

PMID:
2405762
25.

The coagulability of menstrual fluid.

PIERCE LC.

J Bowman Gray Sch Med Wake For Coll. 1948 Sep;6(4):158-61. No abstract available.

PMID:
18886781

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