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Items: 1 to 50 of 175

1.

Molecular profiling of tissue biopsies reveals unique signatures associated with streptococcal necrotizing soft tissue infections.

Thänert R, Itzek A, Hoßmann J, Hamisch D, Madsen MB, Hyldegaard O, Skrede S, Bruun T, Norrby-Teglund A; INFECT study group, Medina E, Pieper DH.

Nat Commun. 2019 Aug 26;10(1):3846. doi: 10.1038/s41467-019-11722-8.

2.

Diversity of Bacteria Exhibiting Bile Acid-inducible 7α-dehydroxylation Genes in the Human Gut.

Vital M, Rud T, Rath S, Pieper DH, Schlüter D.

Comput Struct Biotechnol J. 2019 Jul 26;17:1016-1019. doi: 10.1016/j.csbj.2019.07.012. eCollection 2019.

3.

The impact of proton pump inhibitors on the intestinal microbiota in chronic hepatitis C patients.

Wellhöner F, Döscher N, Tergast TL, Vital M, Plumeier I, Kahl S, Potthoff A, Manns MP, Maasoumy B, Wedemeyer H, Cornberg M, Pieper DH, Heidrich B.

Scand J Gastroenterol. 2019 Aug;54(8):1033-1041. doi: 10.1080/00365521.2019.1647280. Epub 2019 Jul 30.

PMID:
31361979
4.

Analysis of Transcriptionally Active Bacteria Throughout the Gastrointestinal Tract of Healthy Individuals.

Vasapolli R, Schütte K, Schulz C, Vital M, Schomburg D, Pieper DH, Vilchez-Vargas R, Malfertheiner P.

Gastroenterology. 2019 Oct;157(4):1081-1092.e3. doi: 10.1053/j.gastro.2019.05.068. Epub 2019 Jun 5.

PMID:
31175864
5.

Superantigen SpeA attenuates the biofilm forming capacity of Streptococcus pyogenes.

Babbar A, Barrantes I, Pieper DH, Itzek A.

J Microbiol. 2019 Jul;57(7):626-636. doi: 10.1007/s12275-019-8648-z. Epub 2019 Jun 27.

PMID:
31054134
6.

Long-term Multidonor Fecal Microbiota Transfer (FMT) by Oral Capsules for Active Ulcerative Colitis.

Steube A, Vital M, Grunert P, Pieper DH, Stallmach A.

J Crohns Colitis. 2019 Apr 15. pii: jjz073. doi: 10.1093/ecco-jcc/jjz073. [Epub ahead of print] No abstract available.

PMID:
30982852
7.

Cohort profile: The LoewenKIDS Study - life-course perspective on infections, the microbiome and the development of the immune system in early childhood.

Gottschick C, Raupach-Rosin H, Langer S, Hassan L, Horn J, Dorendorf E, Caputo M, Bittner M, Beier L, Rübsamen N, Schlinkmann K, Zoch B, Guzman CA, Hansen G, Heselich V, Holzapfel E, Hübner J, Pietschmann T, Pieper DH, Pletz M, Riese P, Schmidt-Pokrzywniak A, Hartwig S, von Kaisenberg C, Aydogdu M, Buhles M, Dressler F, Eberl W, Haase R, von Koch FE, Feidicker S, Frambach T, Franz HGB, Guthmann F, Koch HG, Seeger S, Oberhoff C, Pauker W, Petry KU, Schild RL, Tchirikov M, Röhrig E, Karch A, Mikolajczyk R.

Int J Epidemiol. 2019 Apr 1. pii: dyz069. doi: 10.1093/ije/dyz069. [Epub ahead of print] No abstract available.

PMID:
30938437
8.

Cohort profile: The LoewenKIDS Study - life-course perspective on infections, the microbiome and the development of the immune system in early childhood.

Gottschick C, Raupach-Rosin H, Langer S, Hassan L, Horn J, Dorendorf E, Caputo M, Bittner M, Beier L, Rübsamen N, Schlinkmann K, Zoch B, Guzman CA, Hansen G, Heselich V, Holzapfel E, Hübner J, Pietschmann T, Pieper DH, Pletz M, Riese P, Schmidt-Pokrzywniak A, Hartwig S, von Kaisenberg C, Aydogdu M, Buhles M, Dressler F, Eberl W, Haase R, Edler von Koch F, Feidicker S, Frambach T, Franz HGB, Guthmann F, Koch HG, Seeger S, Oberhoff C, Pauker W, Petry KU, Schild RL, Tchirikov M, Röhrig E, Mikolajczyk R.

Int J Epidemiol. 2019 Feb 27. pii: dyz001. doi: 10.1093/ije/dyz001. [Epub ahead of print] No abstract available.

PMID:
30815674
9.

Spermidine and Voluntary Activity Exert Differential Effects on Sucrose- Compared with Fat-Induced Systemic Changes in Male Mice.

Schipke J, Vital M, Schnapper-Isl A, Pieper DH, Mühlfeld C.

J Nutr. 2019 Mar 1;149(3):451-462. doi: 10.1093/jn/nxy272.

PMID:
30715385
10.

Analysis of Cdcs1 colitogenic effects in the hematopoietic compartment reveals distinct microbiome interaction and a new subcongenic interval active in T cells.

Bruesch I, Meier P, Vital M, Pieper DH, Selke K, Böhlen S, Basic M, Meier M, Glage S, Hundrieser J, Wedekind D, Buettner M, Bleich A.

Mucosal Immunol. 2019 May;12(3):691-702. doi: 10.1038/s41385-019-0133-9. Epub 2019 Jan 18.

PMID:
30659231
11.

Bacterial community structure and effects of picornavirus infection on the anterior nares microbiome in early childhood.

Caputo M, Zoch-Lesniak B, Karch A, Vital M, Meyer F, Klawonn F, Baillot A, Pieper DH, Mikolajczyk RT.

BMC Microbiol. 2019 Jan 7;19(1):1. doi: 10.1186/s12866-018-1372-8.

12.

Thermoplasmatales and sulfur-oxidizing bacteria dominate the microbial community at the surface water of a CO2-rich hydrothermal spring located in Tenorio Volcano National Park, Costa Rica.

Arce-Rodríguez A, Puente-Sánchez F, Avendaño R, Martínez-Cruz M, de Moor JM, Pieper DH, Chavarría M.

Extremophiles. 2019 Mar;23(2):177-187. doi: 10.1007/s00792-018-01072-6. Epub 2019 Jan 1.

PMID:
30600357
13.

Variations in Microbial Diversity and Metabolite Profiles of the Tropical Marine Sponge Xestospongia muta with Season and Depth.

Villegas-Plazas M, Wos-Oxley ML, Sanchez JA, Pieper DH, Thomas OP, Junca H.

Microb Ecol. 2019 Jul;78(1):243-256. doi: 10.1007/s00248-018-1285-y. Epub 2018 Nov 10.

PMID:
30413836
14.

High diversity of thermophilic cyanobacteria in Rupite hot spring identified by microscopy, cultivation, single-cell PCR and amplicon sequencing.

Strunecký O, Kopejtka K, Goecke F, Tomasch J, Lukavský J, Neori A, Kahl S, Pieper DH, Pilarski P, Kaftan D, Koblížek M.

Extremophiles. 2019 Jan;23(1):35-48. doi: 10.1007/s00792-018-1058-z. Epub 2018 Oct 4.

PMID:
30284641
15.

Viable cyanobacteria in the deep continental subsurface.

Puente-Sánchez F, Arce-Rodríguez A, Oggerin M, García-Villadangos M, Moreno-Paz M, Blanco Y, Rodríguez N, Bird L, Lincoln SA, Tornos F, Prieto-Ballesteros O, Freeman KH, Pieper DH, Timmis KN, Amils R, Parro V.

Proc Natl Acad Sci U S A. 2018 Oct 16;115(42):10702-10707. doi: 10.1073/pnas.1808176115. Epub 2018 Oct 1.

16.

Pathogenic functions of host microbiota.

Rath S, Rud T, Karch A, Pieper DH, Vital M.

Microbiome. 2018 Sep 28;6(1):174. doi: 10.1186/s40168-018-0542-0.

17.

Neonatally imprinted stromal cell subsets induce tolerogenic dendritic cells in mesenteric lymph nodes.

Pezoldt J, Pasztoi M, Zou M, Wiechers C, Beckstette M, Thierry GR, Vafadarnejad E, Floess S, Arampatzi P, Buettner M, Schweer J, Fleissner D, Vital M, Pieper DH, Basic M, Dersch P, Strowig T, Hornef M, Bleich A, Bode U, Pabst O, Bajénoff M, Saliba AE, Huehn J.

Nat Commun. 2018 Sep 25;9(1):3903. doi: 10.1038/s41467-018-06423-7.

18.

Delftia sp. LCW, a strain isolated from a constructed wetland shows novel properties for dimethylphenol isomers degradation.

Vásquez-Piñeros MA, Martínez-Lavanchy PM, Jehmlich N, Pieper DH, Rincón CA, Harms H, Junca H, Heipieper HJ.

BMC Microbiol. 2018 Sep 6;18(1):108. doi: 10.1186/s12866-018-1255-z.

19.

Impact of dental cement on the peri-implant biofilm-microbial comparison of two different cements in an in vivo observational study.

Korsch M, Marten SM, Walther W, Vital M, Pieper DH, Dötsch A.

Clin Implant Dent Relat Res. 2018 Oct;20(5):806-813. doi: 10.1111/cid.12650. Epub 2018 Aug 20.

PMID:
30126038
20.

Determining lineage-specific bacterial growth curves with a novel approach based on amplicon reads normalization using internal standard (ARNIS).

Piwosz K, Shabarova T, Tomasch J, Šimek K, Kopejtka K, Kahl S, Pieper DH, Koblížek M.

ISME J. 2018 Nov;12(11):2640-2654. doi: 10.1038/s41396-018-0213-y. Epub 2018 Jul 6.

21.

Pivotal Role of Preexisting Pathogen-Specific Antibodies in the Development of Necrotizing Soft-Tissue Infections.

Babbar A, Bruun T, Hyldegaard O, Nekludov M, Arnell P; INFECT Study Group, Pieper DH, Itzek A.

J Infect Dis. 2018 Jun 5;218(1):44-52. doi: 10.1093/infdis/jiy110.

PMID:
29878263
22.

Chronic rhinosinusitis with nasal polyps is characterized by dysbacteriosis of the nasal microbiota.

Chalermwatanachai T, Vilchez-Vargas R, Holtappels G, Lacoere T, Jáuregui R, Kerckhof FM, Pieper DH, Van de Wiele T, Vaneechoutte M, Van Zele T, Bachert C.

Sci Rep. 2018 May 21;8(1):7926. doi: 10.1038/s41598-018-26327-2.

23.

Detection of Streptococcus pyogenes virulence genes in Streptococcus dysgalactiae subsp. equisimilis from Vellore, India.

Babbar A, Itzek A, Pieper DH, Nitsche-Schmitz DP.

Folia Microbiol (Praha). 2018 Sep;63(5):581-586. doi: 10.1007/s12223-018-0595-2. Epub 2018 Mar 12.

PMID:
29532420
24.

Initial evenness determines diversity and cell density dynamics in synthetic microbial ecosystems.

Ehsani E, Hernandez-Sanabria E, Kerckhof FM, Props R, Vilchez-Vargas R, Vital M, Pieper DH, Boon N.

Sci Rep. 2018 Jan 10;8(1):340. doi: 10.1038/s41598-017-18668-1.

25.

Colonic Butyrate-Producing Communities in Humans: an Overview Using Omics Data.

Vital M, Karch A, Pieper DH.

mSystems. 2017 Dec 5;2(6). pii: e00130-17. doi: 10.1128/mSystems.00130-17. eCollection 2017 Nov-Dec.

26.

Treatment of biofilms in bacterial vaginosis by an amphoteric tenside pessary-clinical study and microbiota analysis.

Gottschick C, Deng ZL, Vital M, Masur C, Abels C, Pieper DH, Rohde M, Mendling W, Wagner-Döbler I.

Microbiome. 2017 Sep 13;5(1):119. doi: 10.1186/s40168-017-0326-y.

27.

The urinary microbiota of men and women and its changes in women during bacterial vaginosis and antibiotic treatment.

Gottschick C, Deng ZL, Vital M, Masur C, Abels C, Pieper DH, Wagner-Döbler I.

Microbiome. 2017 Aug 14;5(1):99. doi: 10.1186/s40168-017-0305-3.

28.

Fusobacterium and colorectal cancer: causal factor or passenger? Results from a large colorectal cancer screening study.

Amitay EL, Werner S, Vital M, Pieper DH, Höfler D, Gierse IJ, Butt J, Balavarca Y, Cuk K, Brenner H.

Carcinogenesis. 2017 Aug 1;38(8):781-788. doi: 10.1093/carcin/bgx053.

PMID:
28582482
29.

Intestinal microbiota in patients with chronic hepatitis C with and without cirrhosis compared with healthy controls.

Heidrich B, Vital M, Plumeier I, Döscher N, Kahl S, Kirschner J, Ziegert S, Solbach P, Lenzen H, Potthoff A, Manns MP, Wedemeyer H, Pieper DH.

Liver Int. 2018 Jan;38(1):50-58. doi: 10.1111/liv.13485. Epub 2017 Jun 20.

PMID:
28561276
30.

[Intestinal microbiota in individualized therapies].

Witte T, Pieper DH, Heidrich B.

Internist (Berl). 2017 Jul;58(7):682-686. doi: 10.1007/s00108-017-0259-3. Review. German.

PMID:
28540475
31.

Uncovering the trimethylamine-producing bacteria of the human gut microbiota.

Rath S, Heidrich B, Pieper DH, Vital M.

Microbiome. 2017 May 15;5(1):54. doi: 10.1186/s40168-017-0271-9.

32.

Determination of nasal and oropharyngeal microbiomes in a multicenter population-based study - findings from Pretest 1 of the German National Cohort.

Akmatov MK, Koch N, Vital M, Ahrens W, Flesch-Janys D, Fricke J, Gatzemeier A, Greiser H, Günther K, Illig T, Kaaks R, Krone B, Kühn A, Linseisen J, Meisinger C, Michels K, Moebus S, Nieters A, Obi N, Schultze A, Six-Merker J, Pieper DH, Pessler F.

Sci Rep. 2017 May 12;7(1):1855. doi: 10.1038/s41598-017-01212-6.

33.

Draft Genome Sequence of Streptococcus dysgalactiae subsp. equisimilis Strain C161L1 Isolated in Vellore, India.

Babbar A, Nitsche-Schmitz DP, Pieper DH, Barrantes I.

Genome Announc. 2017 May 11;5(19). pii: e00336-17. doi: 10.1128/genomeA.00336-17.

34.

Functional soil metagenomics: elucidation of polycyclic aromatic hydrocarbon degradation potential following 12 years of in situ bioremediation.

Duarte M, Nielsen A, Camarinha-Silva A, Vilchez-Vargas R, Bruls T, Wos-Oxley ML, Jauregui R, Pieper DH.

Environ Microbiol. 2017 Aug;19(8):2992-3011. doi: 10.1111/1462-2920.13756. Epub 2017 May 11.

PMID:
28401633
35.

Members of a new subgroup of Streptococcus anginosus harbor virulence related genes previously observed in Streptococcus pyogenes.

Babbar A, Kumar VN, Bergmann R, Barrantes I, Pieper DH, Itzek A, Nitsche-Schmitz DP.

Int J Med Microbiol. 2017 Apr;307(3):174-181. doi: 10.1016/j.ijmm.2017.02.002. Epub 2017 Feb 28.

PMID:
28274699
36.

One-year calorie restriction impacts gut microbial composition but not its metabolic performance in obese adolescents.

Ruiz A, Cerdó T, Jáuregui R, Pieper DH, Marcos A, Clemente A, García F, Margolles A, Ferrer M, Campoy C, Suárez A.

Environ Microbiol. 2017 Apr;19(4):1536-1551. doi: 10.1111/1462-2920.13713.

PMID:
28251782
37.

Reinforcement of intestinal epithelial barrier by arabinoxylans in overweight and obese subjects: A randomized controlled trial: Arabinoxylans in gut barrier.

Salden BN, Troost FJ, Wilms E, Truchado P, Vilchez-Vargas R, Pieper DH, Jáuregui R, Marzorati M, van de Wiele T, Possemiers S, Masclee AA.

Clin Nutr. 2018 Apr;37(2):471-480. doi: 10.1016/j.clnu.2017.01.024. Epub 2017 Feb 3.

PMID:
28214040
38.

Ursodeoxycholic Acid and Its Taurine- or Glycine-Conjugated Species Reduce Colitogenic Dysbiosis and Equally Suppress Experimental Colitis in Mice.

Van den Bossche L, Hindryckx P, Devisscher L, Devriese S, Van Welden S, Holvoet T, Vilchez-Vargas R, Vital M, Pieper DH, Vanden Bussche J, Vanhaecke L, Van de Wiele T, De Vos M, Laukens D.

Appl Environ Microbiol. 2017 Mar 17;83(7). pii: e02766-16. doi: 10.1128/AEM.02766-16. Print 2017 Apr 1.

39.

Pristine but metal-rich Río Sucio (Dirty River) is dominated by Gallionella and other iron-sulfur oxidizing microbes.

Arce-Rodríguez A, Puente-Sánchez F, Avendaño R, Libby E, Rojas L, Cambronero JC, Pieper DH, Timmis KN, Chavarría M.

Extremophiles. 2017 Mar;21(2):235-243. doi: 10.1007/s00792-016-0898-7. Epub 2016 Dec 8.

PMID:
27933457
40.

The active bacterial assemblages of the upper GI tract in individuals with and without Helicobacter infection.

Schulz C, Schütte K, Koch N, Vilchez-Vargas R, Wos-Oxley ML, Oxley APA, Vital M, Malfertheiner P, Pieper DH.

Gut. 2018 Feb;67(2):216-225. doi: 10.1136/gutjnl-2016-312904. Epub 2016 Dec 5.

PMID:
27920199
41.

Mucosa-associated biohydrogenating microbes protect the simulated colon microbiome from stress associated with high concentrations of poly-unsaturated fat.

De Weirdt R, Hernandez-Sanabria E, Fievez V, Mees E, Geirnaert A, Van Herreweghen F, Vilchez-Vargas R, Van den Abbeele P, Jauregui R, Pieper DH, Vlaeminck B, Van de Wiele T.

Environ Microbiol. 2017 Feb;19(2):722-739. doi: 10.1111/1462-2920.13622. Epub 2017 Jan 25.

PMID:
27883264
42.

Presence does not imply activity: DNA and RNA patterns differ in response to salt perturbation in anaerobic digestion.

De Vrieze J, Regueiro L, Props R, Vilchez-Vargas R, Jáuregui R, Pieper DH, Lema JM, Carballa M.

Biotechnol Biofuels. 2016 Nov 9;9:244. doi: 10.1186/s13068-016-0652-5. eCollection 2016.

43.

In vitro colonisation of the distal colon by Akkermansia muciniphila is largely mucin and pH dependent.

Van Herreweghen F, Van den Abbeele P, De Mulder T, De Weirdt R, Geirnaert A, Hernandez-Sanabria E, Vilchez-Vargas R, Jauregui R, Pieper DH, Belzer C, De Vos WM, Van de Wiele T.

Benef Microbes. 2017 Feb 7;8(1):81-96. doi: 10.3920/BM2016.0013. Epub 2016 Nov 8.

PMID:
27824274
44.

Dietary supplement based on stilbenes: a focus on gut microbial metabolism by the in vitro simulator M-SHIME®.

Giuliani C, Marzorati M, Innocenti M, Vilchez-Vargas R, Vital M, Pieper DH, Van de Wiele T, Mulinacci N.

Food Funct. 2016 Nov 9;7(11):4564-4575.

PMID:
27713962
45.

Draft Genome Sequence of the Deep-Subsurface Actinobacterium Tessaracoccus lapidicaptus IPBSL-7T.

Puente-Sánchez F, Pieper DH, Arce-Rodríguez A.

Genome Announc. 2016 Sep 29;4(5). pii: e01078-16. doi: 10.1128/genomeA.01078-16.

46.

Exploring the transcriptome of Staphylococcus aureus in its natural niche.

Chaves-Moreno D, Wos-Oxley ML, Jáuregui R, Medina E, Oxley AP, Pieper DH.

Sci Rep. 2016 Sep 19;6:33174. doi: 10.1038/srep33174.

47.

Draft Genome Sequence of Aeromonas sp. Strain EERV15.

Ehsani E, Barrantes I, Vandermaesen J, Geffers R, Jarek M, Boon N, Springael D, Pieper DH, Vilchez-Vargas R.

Genome Announc. 2016 Aug 18;4(4). pii: e00811-16. doi: 10.1128/genomeA.00811-16.

48.

The full-scale anaerobic digestion microbiome is represented by specific marker populations.

De Vrieze J, Raport L, Roume H, Vilchez-Vargas R, Jáuregui R, Pieper DH, Boon N.

Water Res. 2016 Nov 1;104:101-110. doi: 10.1016/j.watres.2016.08.008. Epub 2016 Aug 5.

PMID:
27522020
49.

Tackling Threats and Future Problems of Multidrug-Resistant Bacteria.

Medina E, Pieper DH.

Curr Top Microbiol Immunol. 2016;398:3-33. doi: 10.1007/82_2016_492. Review.

PMID:
27406189
50.

High-fiber and high-protein diets shape different gut microbial communities, which ecologically behave similarly under stress conditions, as shown in a gastrointestinal simulator.

Marzorati M, Vilchez-Vargas R, Bussche JV, Truchado P, Jauregui R, El Hage RA, Pieper DH, Vanhaecke L, Van de Wiele T.

Mol Nutr Food Res. 2017 Jan;61(1). doi: 10.1002/mnfr.201600150. Epub 2016 Aug 16.

PMID:
27374808

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