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Items: 46

1.

Longitudinal multi-omics of host-microbe dynamics in prediabetes.

Zhou W, Sailani MR, Contrepois K, Zhou Y, Ahadi S, Leopold SR, Zhang MJ, Rao V, Avina M, Mishra T, Johnson J, Lee-McMullen B, Chen S, Metwally AA, Tran TDB, Nguyen H, Zhou X, Albright B, Hong BY, Petersen L, Bautista E, Hanson B, Chen L, Spakowicz D, Bahmani A, Salins D, Leopold B, Ashland M, Dagan-Rosenfeld O, Rego S, Limcaoco P, Colbert E, Allister C, Perelman D, Craig C, Wei E, Chaib H, Hornburg D, Dunn J, Liang L, Rose SMS, Kukurba K, Piening B, Rost H, Tse D, McLaughlin T, Sodergren E, Weinstock GM, Snyder M.

Nature. 2019 May;569(7758):663-671. doi: 10.1038/s41586-019-1236-x. Epub 2019 May 29.

PMID:
31142858
2.

The NASA Twins Study: A multidimensional analysis of a year-long human spaceflight.

Garrett-Bakelman FE, Darshi M, Green SJ, Gur RC, Lin L, Macias BR, McKenna MJ, Meydan C, Mishra T, Nasrini J, Piening BD, Rizzardi LF, Sharma K, Siamwala JH, Taylor L, Vitaterna MH, Afkarian M, Afshinnekoo E, Ahadi S, Ambati A, Arya M, Bezdan D, Callahan CM, Chen S, Choi AMK, Chlipala GE, Contrepois K, Covington M, Crucian BE, De Vivo I, Dinges DF, Ebert DJ, Feinberg JI, Gandara JA, George KA, Goutsias J, Grills GS, Hargens AR, Heer M, Hillary RP, Hoofnagle AN, Hook VYH, Jenkinson G, Jiang P, Keshavarzian A, Laurie SS, Lee-McMullen B, Lumpkins SB, MacKay M, Maienschein-Cline MG, Melnick AM, Moore TM, Nakahira K, Patel HH, Pietrzyk R, Rao V, Saito R, Salins DN, Schilling JM, Sears DD, Sheridan CK, Stenger MB, Tryggvadottir R, Urban AE, Vaisar T, Van Espen B, Zhang J, Ziegler MG, Zwart SR, Charles JB, Kundrot CE, Scott GBI, Bailey SM, Basner M, Feinberg AP, Lee SMC, Mason CE, Mignot E, Rana BK, Smith SM, Snyder MP, Turek FW.

Science. 2019 Apr 12;364(6436). pii: eaau8650. doi: 10.1126/science.aau8650.

PMID:
30975860
3.

[Implementation of NeoKissEs in Spain: A validated surveillance system for nosocomial sepsis in very low birth weight infants].

Madrid-Aguilar M, López-Herrera MC, Pérez-López J, Escudero-Argaluza J, Santesteban-Otazu E, Piening B, Villate-Navarro JI, Pijoán-Zubizarreta JI; en colaboracion con el grupo NeoKissEs PI13 00587.

An Pediatr (Barc). 2019 Jul;91(1):3-12. doi: 10.1016/j.anpedi.2018.06.020. Epub 2018 Sep 24. Spanish.

4.

An Integrated Understanding of the Rapid Metabolic Benefits of a Carbohydrate-Restricted Diet on Hepatic Steatosis in Humans.

Mardinoglu A, Wu H, Bjornson E, Zhang C, Hakkarainen A, Räsänen SM, Lee S, Mancina RM, Bergentall M, Pietiläinen KH, Söderlund S, Matikainen N, Ståhlman M, Bergh PO, Adiels M, Piening BD, Granér M, Lundbom N, Williams KJ, Romeo S, Nielsen J, Snyder M, Uhlén M, Bergström G, Perkins R, Marschall HU, Bäckhed F, Taskinen MR, Borén J.

Cell Metab. 2018 Mar 6;27(3):559-571.e5. doi: 10.1016/j.cmet.2018.01.005. Epub 2018 Feb 15.

5.

Applying genomics in heart transplantation.

Keating BJ, Pereira AC, Snyder M, Piening BD.

Transpl Int. 2018 Mar;31(3):278-290. doi: 10.1111/tri.13119. Epub 2018 Feb 12. Review.

6.

Integrative Personal Omics Profiles during Periods of Weight Gain and Loss.

Piening BD, Zhou W, Contrepois K, Röst H, Gu Urban GJ, Mishra T, Hanson BM, Bautista EJ, Leopold S, Yeh CY, Spakowicz D, Banerjee I, Chen C, Kukurba K, Perelman D, Craig C, Colbert E, Salins D, Rego S, Lee S, Zhang C, Wheeler J, Sailani MR, Liang L, Abbott C, Gerstein M, Mardinoglu A, Smith U, Rubin DL, Pitteri S, Sodergren E, McLaughlin TL, Weinstock GM, Snyder MP.

Cell Syst. 2018 Feb 28;6(2):157-170.e8. doi: 10.1016/j.cels.2017.12.013. Epub 2018 Jan 17.

7.

Antimicrobial usage in German acute care hospitals: results of the third national point prevalence survey and comparison with previous national point prevalence surveys.

Aghdassi SJS, Gastmeier P, Piening BC, Behnke M, Peña Diaz LA, Gropmann A, Rosenbusch ML, Kramer TS, Hansen S.

J Antimicrob Chemother. 2018 Apr 1;73(4):1077-1083. doi: 10.1093/jac/dkx494.

PMID:
29309607
8.

The Prevalence of Nosocomial Infection and Antibiotic Use in German Hospitals.

Behnke M, Aghdassi SJ, Hansen S, Diaz LAP, Gastmeier P, Piening B.

Dtsch Arztebl Int. 2017 Dec 15;114(50):851-857. doi: 10.3238/arztebl.2017.0851.

9.

Dual-strain probiotics reduce NEC, mortality and neonatal bloodstream infections among extremely low birthweight infants.

Denkel LA, Schwab F, Garten L, Geffers C, Gastmeier P, Piening B.

Arch Dis Child Fetal Neonatal Ed. 2017 Nov;102(6):F559-F560. doi: 10.1136/archdischild-2017-313897. Epub 2017 Sep 18. No abstract available.

PMID:
28923984
10.

Network analyses identify liver-specific targets for treating liver diseases.

Lee S, Zhang C, Liu Z, Klevstig M, Mukhopadhyay B, Bergentall M, Cinar R, Ståhlman M, Sikanic N, Park JK, Deshmukh S, Harzandi AM, Kuijpers T, Grøtli M, Elsässer SJ, Piening BD, Snyder M, Smith U, Nielsen J, Bäckhed F, Kunos G, Uhlen M, Boren J, Mardinoglu A.

Mol Syst Biol. 2017 Aug 21;13(8):938. doi: 10.15252/msb.20177703.

11.

Pathogen-specific mortality in very low birth weight infants with primary bloodstream infection.

Piening BC, Geffers C, Gastmeier P, Schwab F.

PLoS One. 2017 Jun 22;12(6):e0180134. doi: 10.1371/journal.pone.0180134. eCollection 2017.

12.

Responses of metastatic basal cell and cutaneous squamous cell carcinomas to anti-PD1 monoclonal antibody REGN2810.

Falchook GS, Leidner R, Stankevich E, Piening B, Bifulco C, Lowy I, Fury MG.

J Immunother Cancer. 2016 Nov 15;4:70. doi: 10.1186/s40425-016-0176-3. eCollection 2016.

13.

Underestimated and Modifiable? From Intraoperative Drug Application to Postoperative Infections.

Tafelski S, Piening B, Spies C, Nachtigall I.

Anesthesiology. 2016 Oct;125(4):820. doi: 10.1097/ALN.0000000000001251. No abstract available.

PMID:
27649437
14.

Super-heavy electron material as metallic refrigerant for adiabatic demagnetization cooling.

Tokiwa Y, Piening B, Jeevan HS, Bud'ko SL, Canfield PC, Gegenwart P.

Sci Adv. 2016 Sep 9;2(9):e1600835. doi: 10.1126/sciadv.1600835. eCollection 2016 Sep.

15.

Integrated Network Analysis Reveals an Association between Plasma Mannose Levels and Insulin Resistance.

Lee S, Zhang C, Kilicarslan M, Piening BD, Bjornson E, Hallström BM, Groen AK, Ferrannini E, Laakso M, Snyder M, Blüher M, Uhlen M, Nielsen J, Smith U, Serlie MJ, Boren J, Mardinoglu A.

Cell Metab. 2016 Jul 12;24(1):172-84. doi: 10.1016/j.cmet.2016.05.026. Epub 2016 Jun 23.

16.

Protective Effect of Dual-Strain Probiotics in Preterm Infants: A Multi-Center Time Series Analysis.

Denkel LA, Schwab F, Garten L, Geffers C, Gastmeier P, Piening B.

PLoS One. 2016 Jun 22;11(6):e0158136. doi: 10.1371/journal.pone.0158136. eCollection 2016.

17.

Surveillance of bloodstream infections in pediatric cancer centers - what have we learned and how do we move on?

Simon A, Furtwängler R, Graf N, Laws HJ, Voigt S, Piening B, Geffers C, Agyeman P, Ammann RA.

GMS Hyg Infect Control. 2016 May 12;11:Doc11. doi: 10.3205/dgkh000271. eCollection 2016. Review.

18.

The Implementation of an Evidence-Based Bundle for Bloodstream Infections in Neonatal Intensive Care Units in Germany: A Controlled Intervention Study to Improve Patient Safety.

Salm F, Schwab F, Geffers C, Gastmeier P, Piening B.

Infect Control Hosp Epidemiol. 2016 Jul;37(7):798-804. doi: 10.1017/ice.2016.72.

PMID:
27045855
19.

DNA Replication Stress Phosphoproteome Profiles Reveal Novel Functional Phosphorylation Sites on Xrs2 in Saccharomyces cerevisiae.

Huang D, Piening BD, Kennedy JJ, Lin C, Jones-Weinert CW, Yan P, Paulovich AG.

Genetics. 2016 May;203(1):353-68. doi: 10.1534/genetics.115.185231. Epub 2016 Mar 26.

20.

Pathogen-Specific Clustering of Nosocomial Blood Stream Infections in Very Preterm Infants.

Reichert F, Piening B, Geffers C, Gastmeier P, Bührer C, Schwab F.

Pediatrics. 2016 Apr;137(4). pii: e20152860. doi: 10.1542/peds.2015-2860. Epub 2016 Mar 8.

21.

To screen or not to screen mothers of preterm infants for extended-spectrum beta-lactamase-producing Enterobacteriaceae (ESBL-E).

Denkel LA, Gastmeier P, Piening B.

J Perinatol. 2015 Nov;35(11):893-4. doi: 10.1038/jp.2015.100. No abstract available.

PMID:
26507145
22.

Epidemiology of healthcare associated infections in Germany: Nearly 20 years of surveillance.

Schröder C, Schwab F, Behnke M, Breier AC, Maechler F, Piening B, Dettenkofer M, Geffers C, Gastmeier P.

Int J Med Microbiol. 2015 Oct;305(7):799-806. doi: 10.1016/j.ijmm.2015.08.034. Epub 2015 Aug 24.

PMID:
26358916
23.

An outbreak of carbapenem-resistant OXA-48 - producing Klebsiella pneumonia associated to duodenoscopy.

Kola A, Piening B, Pape UF, Veltzke-Schlieker W, Kaase M, Geffers C, Wiedenmann B, Gastmeier P.

Antimicrob Resist Infect Control. 2015 Mar 25;4:8. doi: 10.1186/s13756-015-0049-4. eCollection 2015.

24.

Mortality due to bloodstream infections and necrotizing enterocolitis in very low birth weight infants.

Schwab F, Zibell R, Piening B, Geffers C, Gastmeier P.

Pediatr Infect Dis J. 2015 Mar;34(3):235-40. doi: 10.1097/INF.0000000000000532.

PMID:
25742073
25.

The mother as most important risk factor for colonization of very low birth weight (VLBW) infants with extended-spectrum β-lactamase-producing Enterobacteriaceae (ESBL-E).

Denkel LA, Schwab F, Kola A, Leistner R, Garten L, von Weizsäcker K, Geffers C, Gastmeier P, Piening B.

J Antimicrob Chemother. 2014 Aug;69(8):2230-7. doi: 10.1093/jac/dku097. Epub 2014 Apr 11.

PMID:
24729603
26.

Nosocomial infection and antibiotic use: a second national prevalence study in Germany.

Behnke M, Hansen S, Leistner R, Diaz LA, Gropmann A, Sohr D, Gastmeier P, Piening B.

Dtsch Arztebl Int. 2013 Sep;110(38):627-33. doi: 10.3238/arztebl.2013.0627. Epub 2013 Sep 20.

27.

How many outbreaks of nosocomial infections occur in German neonatal intensive care units annually?

Schwab F, Geffers C, Piening B, Haller S, Eckmanns T, Gastmeier P.

Infection. 2014 Feb;42(1):73-8. doi: 10.1007/s15010-013-0516-x. Epub 2013 Aug 4.

PMID:
23913358
28.

Antibiotic usage in German hospitals: results of the second national prevalence study.

Hansen S, Sohr D, Piening B, Pena Diaz L, Gropmann A, Leistner R, Meyer E, Gastmeier P, Behnke M.

J Antimicrob Chemother. 2013 Dec;68(12):2934-9. doi: 10.1093/jac/dkt292. Epub 2013 Jul 19.

PMID:
23873646
29.

The impact of staffing on central venous catheter-associated bloodstream infections in preterm neonates - results of nation-wide cohort study in Germany.

Leistner R, Thürnagel S, Schwab F, Piening B, Gastmeier P, Geffers C.

Antimicrob Resist Infect Control. 2013 Apr 4;2(1):11. doi: 10.1186/2047-2994-2-11.

30.

Nosocomial infections in very low birthweight infants in Germany: current data from the National Surveillance System NEO-KISS.

Leistner R, Piening B, Gastmeier P, Geffers C, Schwab F.

Klin Padiatr. 2013 Mar;225(2):75-80. doi: 10.1055/s-0033-1334886. Epub 2013 Mar 22.

PMID:
23526612
31.

MRSA transmission on a neonatal intensive care unit: epidemiological and genome-based phylogenetic analyses.

Nübel U, Nachtnebel M, Falkenhorst G, Benzler J, Hecht J, Kube M, Bröcker F, Moelling K, Bührer C, Gastmeier P, Piening B, Behnke M, Dehnert M, Layer F, Witte W, Eckmanns T.

PLoS One. 2013;8(1):e54898. doi: 10.1371/journal.pone.0054898. Epub 2013 Jan 31.

32.

The preference for error-free or error-prone postreplication repair in Saccharomyces cerevisiae exposed to low-dose methyl methanesulfonate is cell cycle dependent.

Huang D, Piening BD, Paulovich AG.

Mol Cell Biol. 2013 Apr;33(8):1515-27. doi: 10.1128/MCB.01392-12. Epub 2013 Feb 4.

33.
34.

[Healthcare-associated infection rates: measuring and comparing. Experiences from the German National Nosocomial Infection Surveillance System (KISS) and from other surveillance systems].

Gastmeier P, Behnke M, Breier AC, Piening B, Schwab F, Dettenkofer M, Geffers C.

Bundesgesundheitsblatt Gesundheitsforschung Gesundheitsschutz. 2012 Nov;55(11-12):1363-9. doi: 10.1007/s00103-012-1551-y. German.

PMID:
23114434
35.

The step from a voluntary to a mandatory national nosocomial infection surveillance system: the influence on infection rates and surveillance effect.

Schwab F, Gastmeier P, Piening B, Geffers C.

Antimicrob Resist Infect Control. 2012 Jun 8;1(1):24. doi: 10.1186/2047-2994-1-24.

36.

The Saccharomyces cerevisiae RAD9, RAD17 and RAD24 genes are required for suppression of mutagenic post-replicative repair during chronic DNA damage.

Murakami-Sekimata A, Huang D, Piening BD, Bangur C, Paulovich AG.

DNA Repair (Amst). 2010 Jul 1;9(7):824-34. doi: 10.1016/j.dnarep.2010.04.007. Epub 2010 May 15.

37.

Outbreak of carbapenem-resistant Acinetobacter baumannii carrying the carbapenemase OXA-23 in a German university medical centre.

Kohlenberg A, Brümmer S, Higgins PG, Sohr D, Piening BC, de Grahl C, Halle E, Rüden H, Seifert H.

J Med Microbiol. 2009 Nov;58(Pt 11):1499-507. doi: 10.1099/jmm.0.012302-0. Epub 2009 Jul 9.

PMID:
19589905
38.

A radiation-derived gene expression signature predicts clinical outcome for breast cancer patients.

Piening BD, Wang P, Subramanian A, Paulovich AG.

Radiat Res. 2009 Feb;171(2):141-54. doi: 10.1667/RR1223.1.

39.

[Surveillance of nosocomial infections among very low birth weight infants in NEO-KISS: from a voluntary system to a mandatory regulation].

Geffers C, Piening B, Schwab F, Gastmeier P.

Z Geburtshilfe Neonatol. 2008 Oct;212(5):170-5. doi: 10.1055/s-2008-1076994. Epub 2008 Oct 27. German.

PMID:
18956274
40.

Integrated pipeline for mass spectrometry-based discovery and confirmation of biomarkers demonstrated in a mouse model of breast cancer.

Whiteaker JR, Zhang H, Zhao L, Wang P, Kelly-Spratt KS, Ivey RG, Piening BD, Feng LC, Kasarda E, Gurley KE, Eng JK, Chodosh LA, Kemp CJ, McIntosh MW, Paulovich AG.

J Proteome Res. 2007 Oct;6(10):3962-75. Epub 2007 Aug 21.

PMID:
17711321
41.

Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics.

Prakash A, Piening B, Whiteaker J, Zhang H, Shaffer SA, Martin D, Hohmann L, Cooke K, Olson JM, Hansen S, Flory MR, Lee H, Watts J, Goodlett DR, Aebersold R, Paulovich A, Schwikowski B.

Mol Cell Proteomics. 2007 Oct;6(10):1741-8. Epub 2007 Jul 7.

42.

Head-to-head comparison of serum fractionation techniques.

Whiteaker JR, Zhang H, Eng JK, Fang R, Piening BD, Feng LC, Lorentzen TD, Schoenherr RM, Keane JF, Holzman T, Fitzgibbon M, Lin C, Zhang H, Cooke K, Liu T, Camp DG 2nd, Anderson L, Watts J, Smith RD, McIntosh MW, Paulovich AG.

J Proteome Res. 2007 Feb;6(2):828-36.

PMID:
17269739
43.

Antibody-based enrichment of peptides on magnetic beads for mass-spectrometry-based quantification of serum biomarkers.

Whiteaker JR, Zhao L, Zhang HY, Feng LC, Piening BD, Anderson L, Paulovich AG.

Anal Biochem. 2007 Mar 1;362(1):44-54. Epub 2006 Dec 20.

44.

Quality control metrics for LC-MS feature detection tools demonstrated on Saccharomyces cerevisiae proteomic profiles.

Piening BD, Wang P, Bangur CS, Whiteaker J, Zhang H, Feng LC, Keane JF, Eng JK, Tang H, Prakash A, McIntosh MW, Paulovich A.

J Proteome Res. 2006 Jul;5(7):1527-34.

PMID:
16823959
45.

Near-asymptotic angle dependence of ocean optical radiance.

Hakim AH, Piening BD, McCormick NJ.

Appl Opt. 2004 Nov 1;43(31):5825-31.

PMID:
15540440
46.

Asymptotic optical depths in source-free ocean waters.

Piening BD, McCormick NJ.

Appl Opt. 2003 Sep 20;42(27):5382-7.

PMID:
14526824

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