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Items: 1 to 50 of 175

1.

Corrigendum: Five decades of genome evolution in the globally distributed, extensively antibiotic-resistant Acinetobacter baumannii global clone 1.

Holt KE, Kenyon JJ, Hamidian M, Schultz MB, Pickard DJ, Dougan G, Hall RM.

Microb Genom. 2019 Jul;5(7). doi: 10.1099/mgen.0.000280. No abstract available.

2.

Rapid transcriptional responses to serum exposure are associated with sensitivity and resistance to antibody-mediated complement killing in invasive Salmonella Typhimurium ST313.

Ondari EM, Klemm EJ, Msefula CL, El Ghany MA, Heath JN, Pickard DJ, Barquist L, Dougan G, Kingsley RA, MacLennan CA.

Wellcome Open Res. 2019 Apr 25;4:74. doi: 10.12688/wellcomeopenres.15059.1. eCollection 2019.

3.

Genomic and Functional Analysis of Emerging Virulent and Multidrug-Resistant Escherichia coli Lineage Sequence Type 648.

Schaufler K, Semmler T, Wieler LH, Trott DJ, Pitout J, Peirano G, Bonnedahl J, Dolejska M, Literak I, Fuchs S, Ahmed N, Grobbel M, Torres C, McNally A, Pickard D, Ewers C, Croucher NJ, Corander J, Guenther S.

Antimicrob Agents Chemother. 2019 May 24;63(6). pii: e00243-19. doi: 10.1128/AAC.00243-19. Print 2019 Jun.

PMID:
30885899
4.

Publisher Correction: Clonal analysis of Salmonella-specific effector T cells reveals serovar-specific and cross-reactive T cell responses.

Napolitani G, Kurupati P, Teng KWW, Gibani MM, Rei M, Aulicino A, Preciado-Llanes L, Wong MT, Becht E, Howson L, de Haas P, Salio M, Blohmke CJ, Olsen LR, Pinto DMS, Scifo L, Jones C, Dobinson H, Campbell D, Juel HB, Thomaides-Brears H, Pickard D, Bumann D, Baker S, Dougan G, Simmons A, Gordon MA, Newell EW, Pollard AJ, Cerundolo V.

Nat Immunol. 2019 Apr;20(4):514. doi: 10.1038/s41590-019-0357-6.

PMID:
30862955
5.

The golden death bacillus Chryseobacterium nematophagum is a novel matrix digesting pathogen of nematodes.

Page AP, Roberts M, Félix MA, Pickard D, Page A, Weir W.

BMC Biol. 2019 Feb 28;17(1):10. doi: 10.1186/s12915-019-0632-x.

6.

Resistance mechanisms and population structure of highly drug resistant Klebsiella in Pakistan during the introduction of the carbapenemase NDM-1.

Heinz E, Ejaz H, Bartholdson Scott J, Wang N, Gujaran S, Pickard D, Wilksch J, Cao H, Haq IU, Dougan G, Strugnell RA.

Sci Rep. 2019 Feb 20;9(1):2392. doi: 10.1038/s41598-019-38943-7.

7.

Draft Genome Sequences of Two Multidrug-Resistant Salmonella enterica Serovar Typhimurium Clinical Isolates from Uruguay.

Cordeiro NF, D'Alessandro B, Iriarte A, Pickard D, Yim L, Chabalgoity JA, Betancor L, Vignoli R.

Microbiol Resour Announc. 2018 Aug 2;7(4). pii: e00917-18. doi: 10.1128/MRA.00917-18. eCollection 2018 Aug.

8.

Functional analysis of Salmonella Typhi adaptation to survival in water.

Kingsley RA, Langridge G, Smith SE, Makendi C, Fookes M, Wileman TM, El Ghany MA, Keith Turner A, Dyson ZA, Sridhar S, Pickard D, Kay S, Feasey N, Wong V, Barquist L, Dougan G.

Environ Microbiol. 2018 Nov;20(11):4079-4090. doi: 10.1111/1462-2920.14458.

9.

Microevolution of epidemiological highly relevant non-O157 enterohemorrhagic Escherichia coli of serogroups O26 and O111.

Eichhorn I, Semmler T, Mellmann A, Pickard D, Anjum MF, Fruth A, Karch H, Wieler LH.

Int J Med Microbiol. 2018 Dec;308(8):1085-1095. doi: 10.1016/j.ijmm.2018.08.003. Epub 2018 Aug 10.

PMID:
30115547
10.

Transposon Insertion Sequencing Elucidates Novel Gene Involvement in Susceptibility and Resistance to Phages T4 and T7 in Escherichia coli O157.

Cowley LA, Low AS, Pickard D, Boinett CJ, Dallman TJ, Day M, Perry N, Gally DL, Parkhill J, Jenkins C, Cain AK.

MBio. 2018 Jul 24;9(4). pii: e00705-18. doi: 10.1128/mBio.00705-18.

11.

ESBL-plasmid carriage in E. coli enhances in vitro bacterial competition fitness and serum resistance in some strains of pandemic sequence types without overall fitness cost.

Ranjan A, Scholz J, Semmler T, Wieler LH, Ewers C, Müller S, Pickard DJ, Schierack P, Tedin K, Ahmed N, Schaufler K, Guenther S.

Gut Pathog. 2018 Jun 15;10:24. doi: 10.1186/s13099-018-0243-z. eCollection 2018.

12.

Morphological, genomic and transcriptomic responses of Klebsiella pneumoniae to the last-line antibiotic colistin.

Cain AK, Boinett CJ, Barquist L, Dordel J, Fookes M, Mayho M, Ellington MJ, Goulding D, Pickard D, Wick RR, Holt KE, Parkhill J, Thomson NR.

Sci Rep. 2018 Jun 29;8(1):9868. doi: 10.1038/s41598-018-28199-y.

13.

Lysogenic conversion of atypical enteropathogenic Escherichia coli (aEPEC) from human, murine, and bovine origin with bacteriophage Φ3538 Δstx2::cat proves their enterohemorrhagic E. coli (EHEC) progeny.

Eichhorn I, Heidemanns K, Ulrich RG, Schmidt H, Semmler T, Fruth A, Bethe A, Goulding D, Pickard D, Karch H, Wieler LH.

Int J Med Microbiol. 2018 Oct;308(7):890-898. doi: 10.1016/j.ijmm.2018.06.005. Epub 2018 Jun 19.

PMID:
29937391
14.

Clonal analysis of Salmonella-specific effector T cells reveals serovar-specific and cross-reactive T cell responses.

Napolitani G, Kurupati P, Teng KWW, Gibani MM, Rei M, Aulicino A, Preciado-Llanes L, Wong MT, Becht E, Howson L, de Haas P, Salio M, Blohmke CJ, Olsen LR, Pinto DMS, Scifo L, Jones C, Dobinson H, Campbell D, Juel HB, Thomaides-Brears H, Pickard D, Bumann D, Baker S, Dougan G, Simmons A, Gordon MA, Newell EW, Pollard AJ, Cerundolo V.

Nat Immunol. 2018 Jul;19(7):742-754. doi: 10.1038/s41590-018-0133-z. Epub 2018 Jun 20. Erratum in: Nat Immunol. 2019 Apr;20(4):514.

PMID:
29925993
15.

A novel prophage identified in strains from Salmonella enterica serovar Enteritidis is a phylogenetic signature of the lineage ST-1974.

D'Alessandro B, Pérez Escanda V, Balestrazzi L, Iriarte A, Pickard D, Yim L, Chabalgoity JA, Betancor L.

Microb Genom. 2018 Mar;4(3). doi: 10.1099/mgen.0.000161. Epub 2018 Mar 6.

16.

Comparison of Salmonella enterica Serovars Typhi and Typhimurium Reveals Typhoidal Serovar-Specific Responses to Bile.

Johnson R, Ravenhall M, Pickard D, Dougan G, Byrne A, Frankel G.

Infect Immun. 2018 Feb 20;86(3). pii: e00490-17. doi: 10.1128/IAI.00490-17. Print 2018 Mar.

17.

Preterm Infant-Associated Clostridium tertium, Clostridium cadaveris, and Clostridium paraputrificum Strains: Genomic and Evolutionary Insights.

Kiu R, Caim S, Alcon-Giner C, Belteki G, Clarke P, Pickard D, Dougan G, Hall LJ.

Genome Biol Evol. 2017 Oct 1;9(10):2707-2714. doi: 10.1093/gbe/evx210.

18.

Engineering the thermal conductivity along an individual silicon nanowire by selective helium ion irradiation.

Zhao Y, Liu D, Chen J, Zhu L, Belianinov A, Ovchinnikova OS, Unocic RR, Burch MJ, Kim S, Hao H, Pickard DS, Li B, Thong JTL.

Nat Commun. 2017 Jun 27;8:15919. doi: 10.1038/ncomms15919.

19.

Exploiting induced pluripotent stem cell-derived macrophages to unravel host factors influencing Chlamydia trachomatis pathogenesis.

Yeung ATY, Hale C, Lee AH, Gill EE, Bushell W, Parry-Smith D, Goulding D, Pickard D, Roumeliotis T, Choudhary J, Thomson N, Skarnes WC, Dougan G, Hancock REW.

Nat Commun. 2017 Apr 25;8:15013. doi: 10.1038/ncomms15013.

20.

Evaluation of applicability of DNA microarray-based characterization of bovine Shiga toxin-producing Escherichia coli isolates using whole genome sequence analysis.

Barth SA, Menge C, Eichhorn I, Semmler T, Pickard D, Geue L.

J Vet Diagn Invest. 2017 Sep;29(5):721-724. doi: 10.1177/1040638717700689. Epub 2017 Apr 5.

PMID:
28381114
21.

Evidence for Contemporary Switching of the O-Antigen Gene Cluster between Shiga Toxin-Producing Escherichia coli Strains Colonizing Cattle.

Geue L, Menge C, Eichhorn I, Semmler T, Wieler LH, Pickard D, Berens C, Barth SA.

Front Microbiol. 2017 Mar 21;8:424. doi: 10.3389/fmicb.2017.00424. eCollection 2017.

22.

Five decades of genome evolution in the globally distributed, extensively antibiotic-resistant Acinetobacter baumannii global clone 1.

Holt K, Kenyon JJ, Hamidian M, Schultz MB, Pickard DJ, Dougan G, Hall R.

Microb Genom. 2016 Feb 23;2(2):e000052. doi: 10.1099/mgen.0.000052. eCollection 2016 Feb. Erratum in: Microb Genom. 2019 Jul;5(7):.

23.

An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid.

Wong VK, Baker S, Connor TR, Pickard D, Page AJ, Dave J, Murphy N, Holliman R, Sefton A, Millar M, Dyson ZA, Dougan G, Holt KE; International Typhoid Consortium.

Nat Commun. 2016 Oct 5;7:12827. doi: 10.1038/ncomms12827.

24.

Molecular Surveillance Identifies Multiple Transmissions of Typhoid in West Africa.

International Typhoid Consortium, Wong VK, Holt KE, Okoro C, Baker S, Pickard DJ, Marks F, Page AJ, Olanipekun G, Munir H, Alter R, Fey PD, Feasey NA, Weill FX, Le Hello S, Hart PJ, Kariuki S, Breiman RF, Gordon MA, Heyderman RS, Jacobs J, Lunguya O, Msefula C, MacLennan CA, Keddy KH, Smith AM, Onsare RS, De Pinna E, Nair S, Amos B, Dougan G, Obaro S.

PLoS Negl Trop Dis. 2016 Sep 22;10(9):e0004781. doi: 10.1371/journal.pntd.0004781. eCollection 2016 Sep.

25.

Evolution of atypical enteropathogenic E. coli by repeated acquisition of LEE pathogenicity island variants.

Ingle DJ, Tauschek M, Edwards DJ, Hocking DM, Pickard DJ, Azzopardi KI, Amarasena T, Bennett-Wood V, Pearson JS, Tamboura B, Antonio M, Ochieng JB, Oundo J, Mandomando I, Qureshi S, Ramamurthy T, Hossain A, Kotloff KL, Nataro JP, Dougan G, Levine MM, Robins-Browne RM, Holt KE.

Nat Microbiol. 2016 Jan 18;1:15010. doi: 10.1038/nmicrobiol.2015.10.

PMID:
27571974
26.

The Accessory Genome of Shiga Toxin-Producing Escherichia coli Defines a Persistent Colonization Type in Cattle.

Barth SA, Menge C, Eichhorn I, Semmler T, Wieler LH, Pickard D, Belka A, Berens C, Geue L.

Appl Environ Microbiol. 2016 Aug 15;82(17):5455-64. doi: 10.1128/AEM.00909-16. Print 2016 Sep 1.

27.

The Molecular and Spatial Epidemiology of Typhoid Fever in Rural Cambodia.

Pham Thanh D, Thompson CN, Rabaa MA, Sona S, Sopheary S, Kumar V, Moore C, Tran Vu Thieu N, Wijedoru L, Holt KE, Wong V, Pickard D, Thwaites GE, Day N, Dougan G, Turner P, Parry CM, Baker S.

PLoS Negl Trop Dis. 2016 Jun 22;10(6):e0004785. doi: 10.1371/journal.pntd.0004785. eCollection 2016 Jun.

28.

Genomic and Phenotypic Analyses Reveal the Emergence of an Atypical Salmonella enterica Serovar Senftenberg Variant in China.

Abd El Ghany M, Shi X, Li Y, Ansari HR, Hill-Cawthorne GA, Ho YS, Naeem R, Pickard D, Klena JD, Xu X, Pain A, Hu Q.

J Clin Microbiol. 2016 Aug;54(8):2014-22. doi: 10.1128/JCM.00052-16. Epub 2016 May 25.

29.

Carriage of Extended-Spectrum Beta-Lactamase-Plasmids Does Not Reduce Fitness but Enhances Virulence in Some Strains of Pandemic E. coli Lineages.

Schaufler K, Semmler T, Pickard DJ, de Toro M, de la Cruz F, Wieler LH, Ewers C, Guenther S.

Front Microbiol. 2016 Mar 17;7:336. doi: 10.3389/fmicb.2016.00336. eCollection 2016.

30.

A novel ciprofloxacin-resistant subclade of H58 Salmonella Typhi is associated with fluoroquinolone treatment failure.

Pham Thanh D, Karkey A, Dongol S, Ho Thi N, Thompson CN, Rabaa MA, Arjyal A, Holt KE, Wong V, Tran Vu Thieu N, Voong Vinh P, Ha Thanh T, Pradhan A, Shrestha SK, Gajurel D, Pickard D, Parry CM, Dougan G, Wolbers M, Dolecek C, Thwaites GE, Basnyat B, Baker S.

Elife. 2016 Mar 11;5:e14003. doi: 10.7554/eLife.14003.

31.

A Phylogenetic and Phenotypic Analysis of Salmonella enterica Serovar Weltevreden, an Emerging Agent of Diarrheal Disease in Tropical Regions.

Makendi C, Page AJ, Wren BW, Le Thi Phuong T, Clare S, Hale C, Goulding D, Klemm EJ, Pickard D, Okoro C, Hunt M, Thompson CN, Phu Huong Lan N, Tran Do Hoang N, Thwaites GE, Le Hello S, Brisabois A, Weill FX, Baker S, Dougan G.

PLoS Negl Trop Dis. 2016 Feb 11;10(2):e0004446. doi: 10.1371/journal.pntd.0004446. eCollection 2016 Feb.

32.

Genome-Based Infection Tracking Reveals Dynamics of Clostridium difficile Transmission and Disease Recurrence.

Kumar N, Miyajima F, He M, Roberts P, Swale A, Ellison L, Pickard D, Smith G, Molyneux R, Dougan G, Parkhill J, Wren BW, Parry CM, Pirmohamed M, Lawley TD.

Clin Infect Dis. 2016 Mar 15;62(6):746-752. doi: 10.1093/cid/civ1031. Epub 2015 Dec 18.

33.

A small Acinetobacter plasmid carrying the tet39 tetracycline resistance determinant.

Hamidian M, Holt KE, Pickard D, Hall RM.

J Antimicrob Chemother. 2016 Jan;71(1):269-71. doi: 10.1093/jac/dkv293. Epub 2015 Sep 27. No abstract available.

34.

Correction: Signatures of Adaptation in Human Invasive Salmonella Typhimurium ST313 Populations from Sub-Saharan Africa.

Okoro CK, Barquist L, Connor TR, Harris SR, Clare S, Stevens MP, Arends MJ, Hale C, Kane L, Pickard DJ, Hill J, Harcourt K, Parkhill J, Dougan G, Kingsley RA.

PLoS Negl Trop Dis. 2015 Jun 15;9(6):e0003848. doi: 10.1371/journal.pntd.0003848. eCollection 2015 Jun. No abstract available.

35.

Interaction of Salmonella enterica Serovar Typhimurium with Intestinal Organoids Derived from Human Induced Pluripotent Stem Cells.

Forbester JL, Goulding D, Vallier L, Hannan N, Hale C, Pickard D, Mukhopadhyay S, Dougan G.

Infect Immun. 2015 Jul;83(7):2926-34. doi: 10.1128/IAI.00161-15. Epub 2015 May 11.

36.

Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events.

Wong VK, Baker S, Pickard DJ, Parkhill J, Page AJ, Feasey NA, Kingsley RA, Thomson NR, Keane JA, Weill FX, Edwards DJ, Hawkey J, Harris SR, Mather AE, Cain AK, Hadfield J, Hart PJ, Thieu NT, Klemm EJ, Glinos DA, Breiman RF, Watson CH, Kariuki S, Gordon MA, Heyderman RS, Okoro C, Jacobs J, Lunguya O, Edmunds WJ, Msefula C, Chabalgoity JA, Kama M, Jenkins K, Dutta S, Marks F, Campos J, Thompson C, Obaro S, MacLennan CA, Dolecek C, Keddy KH, Smith AM, Parry CM, Karkey A, Mulholland EK, Campbell JI, Dongol S, Basnyat B, Dufour M, Bandaranayake D, Naseri TT, Singh SP, Hatta M, Newton P, Onsare RS, Isaia L, Dance D, Davong V, Thwaites G, Wijedoru L, Crump JA, De Pinna E, Nair S, Nilles EJ, Thanh DP, Turner P, Soeng S, Valcanis M, Powling J, Dimovski K, Hogg G, Farrar J, Holt KE, Dougan G.

Nat Genet. 2015 Jun;47(6):632-9. doi: 10.1038/ng.3281. Epub 2015 May 11.

37.

Induced pluripotent stem cell derived macrophages as a cellular system to study salmonella and other pathogens.

Hale C, Yeung A, Goulding D, Pickard D, Alasoo K, Powrie F, Dougan G, Mukhopadhyay S.

PLoS One. 2015 May 6;10(5):e0124307. doi: 10.1371/journal.pone.0124307. eCollection 2015.

38.

Signatures of adaptation in human invasive Salmonella Typhimurium ST313 populations from sub-Saharan Africa.

Okoro CK, Barquist L, Connor TR, Harris SR, Clare S, Stevens MP, Arends MJ, Hale C, Kane L, Pickard DJ, Hill J, Harcourt K, Parkhill J, Dougan G, Kingsley RA.

PLoS Negl Trop Dis. 2015 Mar 24;9(3):e0003611. doi: 10.1371/journal.pntd.0003611. eCollection 2015 Mar. Erratum in: PLoS Negl Trop Dis. 2015 Jun;9(6):e0003848. PLoS Negl Trop Dis. 2015 Aug;9(8):e0003970.

39.

An O antigen capsule modulates bacterial pathogenesis in Shigella sonnei.

Caboni M, Pédron T, Rossi O, Goulding D, Pickard D, Citiulo F, MacLennan CA, Dougan G, Thomson NR, Saul A, Sansonetti PJ, Gerke C.

PLoS Pathog. 2015 Mar 20;11(3):e1004749. doi: 10.1371/journal.ppat.1004749. eCollection 2015 Mar.

40.

Genome Sequence of Acinetobacter baumannii Strain A1, an Early Example of Antibiotic-Resistant Global Clone 1.

Holt KE, Hamidian M, Kenyon JJ, Wynn MT, Hawkey J, Pickard D, Hall RM.

Genome Announc. 2015 Mar 12;3(2). pii: e00032-15. doi: 10.1128/genomeA.00032-15.

41.

Carbapenem and amikacin resistance on a large conjugative Acinetobacter baumannii plasmid.

Nigro SJ, Holt KE, Pickard D, Hall RM.

J Antimicrob Chemother. 2015 Apr;70(4):1259-61. doi: 10.1093/jac/dku486. Epub 2014 Nov 27. No abstract available.

42.

Identification of enterotoxigenic Escherichia coli (ETEC) clades with long-term global distribution.

von Mentzer A, Connor TR, Wieler LH, Semmler T, Iguchi A, Thomson NR, Rasko DA, Joffre E, Corander J, Pickard D, Wiklund G, Svennerholm AM, Sjöling Å, Dougan G.

Nat Genet. 2014 Dec;46(12):1321-6. doi: 10.1038/ng.3145. Epub 2014 Nov 10.

PMID:
25383970
43.

Drug resistance in Salmonella enterica ser. Typhimurium bloodstream infection, Malawi.

Feasey NA, Cain AK, Msefula CL, Pickard D, Alaerts M, Aslett M, Everett DB, Allain TJ, Dougan G, Gordon MA, Heyderman RS, Kingsley RA.

Emerg Infect Dis. 2014 Nov;20(11):1957-9. doi: 10.3201/eid2011.141175. No abstract available.

44.

Nanoscale helium ion microscopic analysis of collagen fibrillar changes following femtosecond laser dissection of human cornea.

Riau AK, Poh R, Pickard DS, Park CH, Chaurasia SS, Mehta JS.

J Biomed Nanotechnol. 2014 Aug;10(8):1552-62.

PMID:
25016655
45.

A conjugative plasmid carrying the carbapenem resistance gene blaOXA-23 in AbaR4 in an extensively resistant GC1 Acinetobacter baumannii isolate.

Hamidian M, Kenyon JJ, Holt KE, Pickard D, Hall RM.

J Antimicrob Chemother. 2014 Oct;69(10):2625-8. doi: 10.1093/jac/dku188. Epub 2014 Jun 6.

46.

Complete Genome Sequences of Two Citrobacter rodentium Bacteriophages, CR8 and CR44b.

Toribio AL, Pickard D, Cerdeño-Tárraga AM, Petty NK, Thomson N, Salmond G, Dougan G.

Genome Announc. 2014 May 29;2(3). pii: e00146-14. doi: 10.1128/genomeA.00146-14.

47.

Insertions in the OCL1 locus of Acinetobacter baumannii lead to shortened lipooligosaccharides.

Kenyon JJ, Holt KE, Pickard D, Dougan G, Hall RM.

Res Microbiol. 2014 Jul-Aug;165(6):472-5. doi: 10.1016/j.resmic.2014.05.034. Epub 2014 May 23.

48.

Genome sequencing of disease and carriage isolates of nontypeable Haemophilus influenzae identifies discrete population structure.

De Chiara M, Hood D, Muzzi A, Pickard DJ, Perkins T, Pizza M, Dougan G, Rappuoli R, Moxon ER, Soriani M, Donati C.

Proc Natl Acad Sci U S A. 2014 Apr 8;111(14):5439-44. doi: 10.1073/pnas.1403353111. Epub 2014 Mar 25.

49.

Draft Genome Sequence of Highly Nematicidal Bacillus thuringiensis DB27.

Iatsenko I, Corton C, Pickard DJ, Dougan G, Sommer RJ.

Genome Announc. 2014 Feb 20;2(1). pii: e00101-14. doi: 10.1128/genomeA.00101-14.

50.

Split-ball resonator as a three-dimensional analogue of planar split-rings.

Kuznetsov AI, Miroshnichenko AE, Fu YH, Viswanathan V, Rahmani M, Valuckas V, Pan ZY, Kivshar Y, Pickard DS, Luk'yanchuk B.

Nat Commun. 2014;5:3104. doi: 10.1038/ncomms4104.

PMID:
24430506

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