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Items: 44

1.

Metabolic and spatio-taxonomic response of uncultivated seafloor bacteria following the Deepwater Horizon oil spill.

Handley KM, Piceno YM, Hu P, Tom LM, Mason OU, Andersen GL, Jansson JK, Gilbert JA.

ISME J. 2017 Nov;11(11):2569-2583. doi: 10.1038/ismej.2017.110. Epub 2017 Aug 4.

2.

Bacterial community structure transformed after thermophilically composting human waste in Haiti.

Piceno YM, Pecora-Black G, Kramer S, Roy M, Reid FC, Dubinsky EA, Andersen GL.

PLoS One. 2017 Jun 1;12(6):e0177626. doi: 10.1371/journal.pone.0177626. eCollection 2017.

3.

Genome-Resolved Metagenomic Analysis Reveals Roles for Candidate Phyla and Other Microbial Community Members in Biogeochemical Transformations in Oil Reservoirs.

Hu P, Tom L, Singh A, Thomas BC, Baker BJ, Piceno YM, Andersen GL, Banfield JF.

MBio. 2016 Jan 19;7(1):e01669-15. doi: 10.1128/mBio.01669-15.

4.

Effects of TiO2 and Ag nanoparticles on polyhydroxybutyrate biosynthesis by activated sludge bacteria.

Priester JH, Van De Werfhorst LC, Ge Y, Adeleye AS, Tomar S, Tom LM, Piceno YM, Andersen GL, Holden PA.

Environ Sci Technol. 2014 Dec 16;48(24):14712-20. doi: 10.1021/es504117x. Epub 2014 Dec 4.

PMID:
25409530
5.

Comparing bacterial community composition of healthy and dark spot-affected Siderastrea siderea in Florida and the Caribbean.

Kellogg CA, Piceno YM, Tom LM, DeSantis TZ, Gray MA, Andersen GL.

PLoS One. 2014 Oct 7;9(10):e108767. doi: 10.1371/journal.pone.0108767. eCollection 2014.

6.

Temperature and injection water source influence microbial community structure in four Alaskan North Slope hydrocarbon reservoirs.

Piceno YM, Reid FC, Tom LM, Conrad ME, Bill M, Hubbard CG, Fouke BW, Graff CJ, Han J, Stringfellow WT, Hanlon JS, Hu P, Hazen TC, Andersen GL.

Front Microbiol. 2014 Aug 7;5:409. doi: 10.3389/fmicb.2014.00409. eCollection 2014.

7.

Inhibition of microbial sulfate reduction in a flow-through column system by (per)chlorate treatment.

Engelbrektson A, Hubbard CG, Tom LM, Boussina A, Jin YT, Wong H, Piceno YM, Carlson HK, Conrad ME, Anderson G, Coates JD.

Front Microbiol. 2014 Jun 26;5:315. doi: 10.3389/fmicb.2014.00315. eCollection 2014.

8.

Coral transcriptome and bacterial community profiles reveal distinct Yellow Band Disease states in Orbicella faveolata.

Closek CJ, Sunagawa S, DeSalvo MK, Piceno YM, DeSantis TZ, Brodie EL, Weber MX, Voolstra CR, Andersen GL, Medina M.

ISME J. 2014 Dec;8(12):2411-22. doi: 10.1038/ismej.2014.85. Epub 2014 Jun 20.

9.

Expansion of urease- and uricase-containing, indole- and p-cresol-forming and contraction of short-chain fatty acid-producing intestinal microbiota in ESRD.

Wong J, Piceno YM, DeSantis TZ, Pahl M, Andersen GL, Vaziri ND.

Am J Nephrol. 2014;39(3):230-237. doi: 10.1159/000360010. Epub 2014 Mar 8.

10.

Microbial biogeography across a full-scale wastewater treatment plant transect: evidence for immigration between coupled processes.

Wells GF, Wu CH, Piceno YM, Eggleston B, Brodie EL, Desantis TZ, Andersen GL, Hazen TC, Francis CA, Criddle CS.

Appl Microbiol Biotechnol. 2014 May;98(10):4723-36. doi: 10.1007/s00253-014-5564-3. Epub 2014 Feb 20.

PMID:
24553968
11.

Comparing bacterial community composition between healthy and white plague-like disease states in Orbicella annularis using PhyloChip™ G3 microarrays.

Kellogg CA, Piceno YM, Tom LM, DeSantis TZ, Gray MA, Zawada DG, Andersen GL.

PLoS One. 2013 Nov 20;8(11):e79801. doi: 10.1371/journal.pone.0079801. eCollection 2013.

12.

Diversity of bacterioplankton in contrasting Tibetan lakes revealed by high-density microarray and clone library analysis.

Zhang R, Wu Q, Piceno YM, Desantis TZ, Saunders FM, Andersen GL, Liu WT.

FEMS Microbiol Ecol. 2013 Nov;86(2):277-87. doi: 10.1111/1574-6941.12160. Epub 2013 Jul 10.

13.

Truffle brûlés have an impact on the diversity of soil bacterial communities.

Mello A, Ding GC, Piceno YM, Napoli C, Tom LM, DeSantis TZ, Andersen GL, Smalla K, Bonfante P.

PLoS One. 2013 Apr 30;8(4):e61945. doi: 10.1371/journal.pone.0061945. Print 2013.

14.

Changes of soil bacterial diversity as a consequence of agricultural land use in a semi-arid ecosystem.

Ding GC, Piceno YM, Heuer H, Weinert N, Dohrmann AB, Carrillo A, Andersen GL, Castellanos T, Tebbe CC, Smalla K.

PLoS One. 2013;8(3):e59497. doi: 10.1371/journal.pone.0059497. Epub 2013 Mar 20.

15.

Biogeography of bacterioplankton in the tropical seawaters of Singapore.

Lau SC, Zhang R, Brodie EL, Piceno YM, Andersen G, Liu WT.

FEMS Microbiol Ecol. 2013 May;84(2):259-69. doi: 10.1111/1574-6941.12057. Epub 2013 Jan 15.

16.

Tackling the minority: sulfate-reducing bacteria in an archaea-dominated subsurface biofilm.

Probst AJ, Holman HY, DeSantis TZ, Andersen GL, Birarda G, Bechtel HA, Piceno YM, Sonnleitner M, Venkateswaran K, Moissl-Eichinger C.

ISME J. 2013 Mar;7(3):635-51. doi: 10.1038/ismej.2012.133. Epub 2012 Nov 22.

17.

Changes in the microbial community structure of bacteria, archaea and fungi in response to elevated CO(2) and warming in an Australian native grassland soil.

Hayden HL, Mele PM, Bougoure DS, Allan CY, Norng S, Piceno YM, Brodie EL, Desantis TZ, Andersen GL, Williams AL, Hovenden MJ.

Environ Microbiol. 2012 Dec;14(12):3081-96. doi: 10.1111/j.1462-2920.2012.02855.x. Epub 2012 Oct 8.

PMID:
23039205
18.

Chronic kidney disease alters intestinal microbial flora.

Vaziri ND, Wong J, Pahl M, Piceno YM, Yuan J, DeSantis TZ, Ni Z, Nguyen TH, Andersen GL.

Kidney Int. 2013 Feb;83(2):308-15. doi: 10.1038/ki.2012.345. Epub 2012 Sep 19.

19.

Microbial community analysis of a coastal salt marsh affected by the Deepwater Horizon oil spill.

Beazley MJ, Martinez RJ, Rajan S, Powell J, Piceno YM, Tom LM, Andersen GL, Hazen TC, Van Nostrand JD, Zhou J, Mortazavi B, Sobecky PA.

PLoS One. 2012;7(7):e41305. doi: 10.1371/journal.pone.0041305. Epub 2012 Jul 18. Erratum in: PLoS One. 2012;7(11). doi:10.1371/annotation/72b08ecf-1e78-4668-a094-c818def0e03f.

20.

Influence of geogenic factors on microbial communities in metallogenic Australian soils.

Reith F, Brugger J, Zammit CM, Gregg AL, Goldfarb KC, Andersen GL, DeSantis TZ, Piceno YM, Brodie EL, Lu Z, He Z, Zhou J, Wakelin SA.

ISME J. 2012 Nov;6(11):2107-18. doi: 10.1038/ismej.2012.48. Epub 2012 Jun 7.

21.

Bacterial communities in commercial aircraft high-efficiency particulate air (HEPA) filters assessed by PhyloChip analysis.

Korves TM, Piceno YM, Tom LM, Desantis TZ, Jones BW, Andersen GL, Hwang GM.

Indoor Air. 2013 Feb;23(1):50-61. doi: 10.1111/j.1600-0668.2012.00787.x. Epub 2012 Jun 8.

PMID:
22563927
22.

High-density PhyloChip profiling of stimulated aquifer microbial communities reveals a complex response to acetate amendment.

Handley KM, Wrighton KC, Piceno YM, Andersen GL, DeSantis TZ, Williams KH, Wilkins MJ, N'Guessan AL, Peacock A, Bargar J, Long PE, Banfield JF.

FEMS Microbiol Ecol. 2012 Jul;81(1):188-204. doi: 10.1111/j.1574-6941.2012.01363.x. Epub 2012 Apr 13.

23.

Bacterial communities associated with a mineral weathering profile at a sulphidic mine tailings dump in arid Western Australia.

Wakelin SA, Anand RR, Reith F, Gregg AL, Noble RR, Goldfarb KC, Andersen GL, DeSantis TZ, Piceno YM, Brodie EL.

FEMS Microbiol Ecol. 2012 Feb;79(2):298-311. doi: 10.1111/j.1574-6941.2011.01215.x. Epub 2011 Oct 24.

24.

PhyloChip™ microarray comparison of sampling methods used for coral microbial ecology.

Kellogg CA, Piceno YM, Tom LM, DeSantis TZ, Zawada DG, Andersen GL.

J Microbiol Methods. 2012 Jan;88(1):103-9. doi: 10.1016/j.mimet.2011.10.019. Epub 2011 Nov 4.

PMID:
22085912
25.

Bacterial diversity in the cecum of the world's largest living rodent (Hydrochoerus hydrochaeris).

García-Amado MA, Godoy-Vitorino F, Piceno YM, Tom LM, Andersen GL, Herrera EA, Domínguez-Bello MG.

Microb Ecol. 2012 May;63(4):719-25. doi: 10.1007/s00248-011-9963-z. Epub 2011 Nov 15.

PMID:
22083250
26.

Comparison of innovative molecular approaches and standard spore assays for assessment of surface cleanliness.

Cooper M, La Duc MT, Probst A, Vaishampayan P, Stam C, Benardini JN, Piceno YM, Andersen GL, Venkateswaran K.

Appl Environ Microbiol. 2011 Aug;77(15):5438-44. doi: 10.1128/AEM.00192-11. Epub 2011 Jun 7.

27.

Deciphering the rhizosphere microbiome for disease-suppressive bacteria.

Mendes R, Kruijt M, de Bruijn I, Dekkers E, van der Voort M, Schneider JH, Piceno YM, DeSantis TZ, Andersen GL, Bakker PA, Raaijmakers JM.

Science. 2011 May 27;332(6033):1097-100. doi: 10.1126/science.1203980. Epub 2011 May 5.

28.

Comparison of the fecal microbiota in feral and domestic goats.

De Jesús-Laboy KM, Godoy-Vitorino F, Piceno YM, Tom LM, Pantoja-Feliciano IG, Rivera-Rivera MJ, Andersen GL, Domínguez-Bello MG.

Genes (Basel). 2011 Dec 21;3(1):1-18. doi: 10.3390/genes3010001.

29.

Bacterial community structure in geographically distributed biological wastewater treatment reactors.

Xia S, Duan L, Song Y, Li J, Piceno YM, Andersen GL, Alvarez-Cohen L, Moreno-Andrade I, Huang CL, Hermanowicz SW.

Environ Sci Technol. 2010 Oct 1;44(19):7391-6. doi: 10.1021/es101554m.

PMID:
20812670
30.

Deep-sea oil plume enriches indigenous oil-degrading bacteria.

Hazen TC, Dubinsky EA, DeSantis TZ, Andersen GL, Piceno YM, Singh N, Jansson JK, Probst A, Borglin SE, Fortney JL, Stringfellow WT, Bill M, Conrad ME, Tom LM, Chavarria KL, Alusi TR, Lamendella R, Joyner DC, Spier C, Baelum J, Auer M, Zemla ML, Chakraborty R, Sonnenthal EL, D'haeseleer P, Holman HY, Osman S, Lu Z, Van Nostrand JD, Deng Y, Zhou J, Mason OU.

Science. 2010 Oct 8;330(6001):204-8. doi: 10.1126/science.1195979. Epub 2010 Aug 24.

31.

Bacterial diversity of weathered terrestrial Icelandic volcanic glasses.

Kelly LC, Cockell CS, Piceno YM, Andersen GL, Thorsteinsson T, Marteinsson V.

Microb Ecol. 2010 Nov;60(4):740-52. doi: 10.1007/s00248-010-9684-8. Epub 2010 May 15.

PMID:
20473490
32.

[Using high-density universal 16S rRNA microarray in microbial molecular ecology research].

Duan L, Xia SQ, Song YH, Piceno YM, Hermanowicz SW.

Huan Jing Ke Xue. 2009 Dec;30(12):3691-7. Chinese.

PMID:
20187408
33.

Microbial secondary succession in a chronosequence of chalk grasslands.

Kuramae EE, Gamper HA, Yergeau E, Piceno YM, Brodie EL, Desantis TZ, Andersen GL, van Veen JA, Kowalchuk GA.

ISME J. 2010 May;4(5):711-5. doi: 10.1038/ismej.2010.11. Epub 2010 Feb 18.

PMID:
20164861
34.

Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata.

Sunagawa S, DeSantis TZ, Piceno YM, Brodie EL, DeSalvo MK, Voolstra CR, Weil E, Andersen GL, Medina M.

ISME J. 2009 May;3(5):512-21. doi: 10.1038/ismej.2008.131. Epub 2009 Jan 8.

PMID:
19129866
35.

Environmental microarray analyses of Antarctic soil microbial communities.

Yergeau E, Schoondermark-Stolk SA, Brodie EL, Déjean S, DeSantis TZ, Gonçalves O, Piceno YM, Andersen GL, Kowalchuk GA.

ISME J. 2009 Mar;3(3):340-51. doi: 10.1038/ismej.2008.111. Epub 2008 Nov 20.

PMID:
19020556
36.

High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment.

DeSantis TZ, Brodie EL, Moberg JP, Zubieta IX, Piceno YM, Andersen GL.

Microb Ecol. 2007 Apr;53(3):371-83. Epub 2007 Mar 2.

PMID:
17334858
37.

Urban aerosols harbor diverse and dynamic bacterial populations.

Brodie EL, DeSantis TZ, Parker JP, Zubietta IX, Piceno YM, Andersen GL.

Proc Natl Acad Sci U S A. 2007 Jan 2;104(1):299-304. Epub 2006 Dec 20.

38.

NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes.

DeSantis TZ Jr, Hugenholtz P, Keller K, Brodie EL, Larsen N, Piceno YM, Phan R, Andersen GL.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W394-9.

39.

Flash detection/identification of pathogens, bacterial spores and bioterrorism agent biomarkers from clinical and environmental matrices.

White DC, Lytle CA, Gan YD, Piceno YM, Wimpee MH, Peacock AD, Smith CA.

J Microbiol Methods. 2002 Feb;48(2-3):139-47.

PMID:
11777564
40.

Molecular analysis of diazotroph diversity in the rhizosphere of the smooth cordgrass, Spartina alterniflora.

Lovell CR, Piceno YM, Quattro JM, Bagwell CE.

Appl Environ Microbiol. 2000 Sep;66(9):3814-22.

42.
44.

Physiological diversity of the rhizosphere diazotroph assemblages of selected salt marsh grasses.

Bagwell CE, Piceno YM, Ashburne-Lucas A, Lovell CR.

Appl Environ Microbiol. 1998 Nov;64(11):4276-82.

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