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Diagnostic accuracy of transbronchial lung cryobiopsy for interstitial lung disease diagnosis (COLDICE): a prospective, comparative study.

Troy LK, Grainge C, Corte TJ, Williamson JP, Vallely MP, Cooper WA, Mahar A, Myers JL, Lai S, Mulyadi E, Torzillo PJ, Phillips MJ, Jo HE, Webster SE, Lin QT, Rhodes JE, Salamonsen M, Wrobel JP, Harris B, Don G, Wu PJC, Ng BJ, Oldmeadow C, Raghu G, Lau EMT; Cryobiopsy versus Open Lung biopsy in the Diagnosis of Interstitial lung disease alliance (COLDICE) Investigators.

Lancet Respir Med. 2019 Sep 27. pii: S2213-2600(19)30342-X. doi: 10.1016/S2213-2600(19)30342-X. [Epub ahead of print]


Multi-Institutional Multidisciplinary Injury Mortality Investigation in the Civilian Pre-Hospital Environment (MIMIC): a methodology for reliably measuring prehospital time and distance to definitive care.

Medrano NW, Villarreal CL, Price MA, MacKenzie E, Nolte KB, Phillips MJ, Stewart RM, Eastridge BJ.

Trauma Surg Acute Care Open. 2019 Apr 11;4(1):e000309. doi: 10.1136/tsaco-2019-000309. eCollection 2019. Review.


Reproducibility and staging of 3D human retinal organoids across multiple pluripotent stem cell lines.

Capowski EE, Samimi K, Mayerl SJ, Phillips MJ, Pinilla I, Howden SE, Saha J, Jansen AD, Edwards KL, Jager LD, Barlow K, Valiauga R, Erlichman Z, Hagstrom A, Sinha D, Sluch VM, Chamling X, Zack DJ, Skala MC, Gamm DM.

Development. 2019 Jan 9;146(1). pii: dev171686. doi: 10.1242/dev.171686.


Reconstructing the Evolution of Giant Extinct Kangaroos: Comparing the Utility of DNA, Morphology, and Total Evidence.

Cascini M, Mitchell KJ, Cooper A, Phillips MJ.

Syst Biol. 2019 May 1;68(3):520-537. doi: 10.1093/sysbio/syy080.


3D Microstructured Scaffolds to Support Photoreceptor Polarization and Maturation.

Jung YH, Phillips MJ, Lee J, Xie R, Ludwig AL, Chen G, Zheng Q, Kim TJ, Zhang H, Barney P, Min J, Barlow K, Gong S, Gamm DM, Ma Z.

Adv Mater. 2018 Sep;30(39):e1803550. doi: 10.1002/adma.201803550. Epub 2018 Aug 14.


Launch of the National Trauma Research Repository coincides with new data sharing requirements.

Price MA, Bixby PJ, Phillips MJ, Beilman GJ, Bulger EM, Davis MR, McAuliffe MJ, Rasmussen TE, Salinas J, Smith SL, Spott MA, Weireter LJ, Jenkins DH.

Trauma Surg Acute Care Open. 2018 Jun 27;3(1):e000193. doi: 10.1136/tsaco-2018-000193. eCollection 2018. No abstract available.


Infusion Reactions With Monoclonal Antibody Therapy in Myeloma: Learning From Experience.

Reece DE, Phillips MJ.

J Oncol Pract. 2018 Jul;14(7):425-426. doi: 10.1200/JOP.18.00377. No abstract available.


The soft explosive model of placental mammal evolution.

Phillips MJ, Fruciano C.

BMC Evol Biol. 2018 Jul 3;18(1):104. doi: 10.1186/s12862-018-1218-x.


Evidence for a Large Expansion and Subfunctionalization of Globin Genes in Sea Anemones.

Smith HL, Pavasovic A, Surm JM, Phillips MJ, Prentis PJ.

Genome Biol Evol. 2018 Aug 1;10(8):1892-1901. doi: 10.1093/gbe/evy128.


Low resolution scans can provide a sufficiently accurate, cost- and time-effective alternative to high resolution scans for 3D shape analyses.

Marcy AE, Fruciano C, Phillips MJ, Mardon K, Weisbecker V.

PeerJ. 2018 Jun 22;6:e5032. doi: 10.7717/peerj.5032. eCollection 2018.


Malignant airway obstruction: What to do?

Phillips MJ.

Respirology. 2018 Jun 14. doi: 10.1111/resp.13343. [Epub ahead of print] No abstract available.


Retinal Ganglion Cell Diversity and Subtype Specification from Human Pluripotent Stem Cells.

Langer KB, Ohlemacher SK, Phillips MJ, Fligor CM, Jiang P, Gamm DM, Meyer JS.

Stem Cell Reports. 2018 Apr 10;10(4):1282-1293. doi: 10.1016/j.stemcr.2018.02.010. Epub 2018 Mar 22.


Generation of a rod-specific NRL reporter line in human pluripotent stem cells.

Phillips MJ, Capowski EE, Petersen A, Jansen AD, Barlow K, Edwards KL, Gamm DM.

Sci Rep. 2018 Feb 5;8(1):2370. doi: 10.1038/s41598-018-20813-3.


Uncemented vs Cemented Cruciate Retaining Total Knee Arthroplasty in Patients With Body Mass Index Greater Than 30.

Boyle KK, Nodzo SR, Ferraro JT, Augenblick DJ, Pavlesen S, Phillips MJ.

J Arthroplasty. 2018 Apr;33(4):1082-1088. doi: 10.1016/j.arth.2017.11.043. Epub 2017 Dec 1.


A Novel Approach to Single Cell RNA-Sequence Analysis Facilitates In Silico Gene Reporting of Human Pluripotent Stem Cell-Derived Retinal Cell Types.

Phillips MJ, Jiang P, Howden S, Barney P, Min J, York NW, Chu LF, Capowski EE, Cash A, Jain S, Barlow K, Tabassum T, Stewart R, Pattnaik BR, Thomson JA, Gamm DM.

Stem Cells. 2018 Mar;36(3):313-324. doi: 10.1002/stem.2755. Epub 2017 Dec 25. Erratum in: Stem Cells. 2018 Jul;36(7):1133.


Resolving kangaroo phylogeny and overcoming retrotransposon ascertainment bias.

Dodt WG, Gallus S, Phillips MJ, Nilsson MA.

Sci Rep. 2017 Dec 1;7(1):16811. doi: 10.1038/s41598-017-16148-0.


Speciation Generates Mosaic Genomes in Kangaroos.

Nilsson MA, Zheng Y, Kumar V, Phillips MJ, Janke A.

Genome Biol Evol. 2018 Jan 1;10(1):33-44. doi: 10.1093/gbe/evx245.


Microfluidic isolation of platelet-covered circulating tumor cells.

Jiang X, Wong KHK, Khankhel AH, Zeinali M, Reategui E, Phillips MJ, Luo X, Aceto N, Fachin F, Hoang AN, Kim W, Jensen AE, Sequist LV, Maheswaran S, Haber DA, Stott SL, Toner M.

Lab Chip. 2017 Oct 11;17(20):3498-3503. doi: 10.1039/c7lc00654c.


Sharing is caring? Measurement error and the issues arising from combining 3D morphometric datasets.

Fruciano C, Celik MA, Butler K, Dooley T, Weisbecker V, Phillips MJ.

Ecol Evol. 2017 Jul 31;7(17):7034-7046. doi: 10.1002/ece3.3256. eCollection 2017 Sep.


Methylomic profiling and replication implicates deregulation of PCSK9 in alcohol use disorder.

Lohoff FW, Sorcher JL, Rosen AD, Mauro KL, Fanelli RR, Momenan R, Hodgkinson CA, Vendruscolo LF, Koob GF, Schwandt M, George DT, Jones IS, Holmes A, Zhou Z, Xu MJ, Gao B, Sun H, Phillips MJ, Muench C, Kaminsky ZA.

Mol Psychiatry. 2018 Sep;23(9):1900-1910. doi: 10.1038/mp.2017.168. Epub 2017 Aug 29.


Research standardization tools: pregnancy measures in the PhenX Toolkit.

Malinowski AK, Ananth CV, Catalano P, Hines EP, Kirby RS, Klebanoff MA, Mulvihill JJ, Simhan H, Hamilton CM, Hendershot TP, Phillips MJ, Kilpatrick LA, Maiese DR, Ramos EM, Wright RJ, Dolan SM; PhenX Pregnancy Working Group.

Am J Obstet Gynecol. 2017 Sep;217(3):249-262. doi: 10.1016/j.ajog.2017.05.058. Epub 2017 May 31.


Exercise training for people following curative intent treatment for non-small cell lung cancer: a randomized controlled trial.

Cavalheri V, Jenkins S, Cecins N, Gain K, Phillips MJ, Sanders LH, Hill K.

Braz J Phys Ther. 2017 Jan - Feb;21(1):58-68. doi: 10.1016/j.bjpt.2016.12.005. Epub 2017 Jan 13.


Low Incidence of Postoperative Complications With Navigated Total Knee Arthroplasty.

Brown MJ, Matthews JR, Bayers-Thering MT, Phillips MJ, Krackow KA.

J Arthroplasty. 2017 Jul;32(7):2120-2126. doi: 10.1016/j.arth.2017.01.045. Epub 2017 Feb 3.


Trunnion Corrosion in Metal-on-Polyethylene Total Hip Arthroplasty: A Case Series.

Raju S, Chinnakkannu K, Puttaswamy MK, Phillips MJ.

J Am Acad Orthop Surg. 2017 Feb;25(2):133-139. doi: 10.5435/JAAOS-D-16-00352. Erratum in: J Am Acad Orthop Surg. 2017 Mar;25(3):250.


De novo DNA methylation by DNA methyltransferase 3a controls early effector CD8+ T-cell fate decisions following activation.

Ladle BH, Li KP, Phillips MJ, Pucsek AB, Haile A, Powell JD, Jaffee EM, Hildeman DA, Gamper CJ.

Proc Natl Acad Sci U S A. 2016 Sep 20;113(38):10631-6. doi: 10.1073/pnas.1524490113. Epub 2016 Aug 31.


Resolving the evolution of the mammalian middle ear using Bayesian inference.

Ramírez-Chaves HE, Weisbecker V, Wroe S, Phillips MJ.

Front Zool. 2016 Aug 24;13(1):39. doi: 10.1186/s12983-016-0171-z. eCollection 2016.


Sri Lanka Pilot Study to Examine Respiratory Health Effects and Personal PM2.5 Exposures from Cooking Indoors.

Phillips MJ, Smith EA, Mosquin PL, Chartier R, Nandasena S, Bronstein K, Elledge MF, Thornburg V, Thornburg J, Brown LM.

Int J Environ Res Public Health. 2016 Aug 5;13(8). pii: E791. doi: 10.3390/ijerph13080791.


Closing the gap between rocks and clocks using total-evidence dating.

Ronquist F, Lartillot N, Phillips MJ.

Philos Trans R Soc Lond B Biol Sci. 2016 Jul 19;371(1699). pii: 20150136. doi: 10.1098/rstb.2015.0136.


A mixed relaxed clock model.

Lartillot N, Phillips MJ, Ronquist F.

Philos Trans R Soc Lond B Biol Sci. 2016 Jul 19;371(1699). pii: 20150132. doi: 10.1098/rstb.2015.0132.


Regulation of WNT Signaling by VSX2 During Optic Vesicle Patterning in Human Induced Pluripotent Stem Cells.

Capowski EE, Wright LS, Liang K, Phillips MJ, Wallace K, Petelinsek A, Hagstrom A, Pinilla I, Borys K, Lien J, Min JH, Keles S, Thomson JA, Gamm DM.

Stem Cells. 2016 Nov;34(11):2625-2634. doi: 10.1002/stem.2414. Epub 2016 Jul 5.


The National Trauma Institute: Lessons learned in the funding and conduct of 16 trauma research studies.

Price MA, Beilman GJ, Fabian TC, Hoyt DB, Jurkovich GJ, Knudson MM, MacKenzie EJ, Marshall VS, Overton KE, Peitzman AB, Phillips MJ, Pruitt BA Jr, Smith SL, Stewart RM, Jenkins DH; National Trauma Institute Research Group.

J Trauma Acute Care Surg. 2016 Sep;81(3):548-54. doi: 10.1097/TA.0000000000001080.


Overexpression of Fibrinogen-Like Protein 2 Promotes Tolerance in a Fully Mismatched Murine Model of Heart Transplantation.

Bartczak A, Chruscinski A, Mendicino M, Liu H, Zhang J, He W, Amir AZ, Nguyen A, Khattar R, Sadozai H, Lobe CG, Adeyi O, Phillips MJ, Zhang L, Gorczynski RM, Grant D, Levy GA.

Am J Transplant. 2016 Jun;16(6):1739-50. doi: 10.1111/ajt.13696. Epub 2016 Mar 17.


Geomolecular Dating and the Origin of Placental Mammals.

Phillips MJ.

Syst Biol. 2016 May;65(3):546-57. doi: 10.1093/sysbio/syv115. Epub 2015 Dec 10.


Structure and function of ER membrane contact sites with other organelles.

Phillips MJ, Voeltz GK.

Nat Rev Mol Cell Biol. 2016 Feb;17(2):69-82. doi: 10.1038/nrm.2015.8. Epub 2015 Dec 2. Review.


Comment on "Whole-genome analyses resolve early branches in the tree of life of modern birds".

Mitchell KJ, Cooper A, Phillips MJ.

Science. 2015 Sep 25;349(6255):1460. doi: 10.1126/science.aab1062.


VSX2 and ASCL1 Are Indicators of Neurogenic Competence in Human Retinal Progenitor Cultures.

Wright LS, Pinilla I, Saha J, Clermont JM, Lien JS, Borys KD, Capowski EE, Phillips MJ, Gamm DM.

PLoS One. 2015 Aug 20;10(8):e0135830. doi: 10.1371/journal.pone.0135830. eCollection 2015.


Screening for Peripheral Arterial Disease Using the Ankle-Brachial Index in Diabetic and Other High-Risk Patients: Pros and Cons.

Paraskevas KI, Phillips MJ, Shearman CP.

Angiology. 2016 Aug;67(7):607-9. doi: 10.1177/0003319715597090. Epub 2015 Jul 22. No abstract available.


Abdominal Aortic Aneurysms, Peripheral Arterial Disease, and Carotid Artery Stenosis: Different Sides of the Same Coin?

Paraskevas KI, Nordon IM, Baxter SJ, Shearman CP, Phillips MJ.

Angiology. 2016 Apr;67(4):307-8. doi: 10.1177/0003319715594932. Epub 2015 Jul 10. No abstract available.


Oldest pathology in a tetrapod bone illuminates the origin of terrestrial vertebrates.

Bishop PJ, Walmsley CW, Phillips MJ, Quayle MR, Boisvert CA, McHenry CR.

PLoS One. 2015 May 4;10(5):e0125723. doi: 10.1371/journal.pone.0125723. eCollection 2015.


The Fossil Calibration Database-A New Resource for Divergence Dating.

Ksepka DT, Parham JF, Allman JF, Benton MJ, Carrano MT, Cranston KA, Donoghue PC, Head JJ, Hermsen EJ, Irmis RB, Joyce WG, Kohli M, Lamm KD, Leehr D, Patané JL, Polly PD, Phillips MJ, Smith NA, Smith ND, Van Tuinen M, Ware JL, Warnock RC.

Syst Biol. 2015 Sep;64(5):853-9. doi: 10.1093/sysbio/syv025. Epub 2015 Apr 27.


Short Term Outcomes of a Hydroxyapatite Coated Metal Backed Patella.

Nodzo SR, Hohman DW, Hoy AS, Bayers-Thering M, Pavlesen S, Phillips MJ.

J Arthroplasty. 2015 Aug;30(8):1339-43. doi: 10.1016/j.arth.2015.02.029. Epub 2015 Feb 28.


Effects of naltrexone on neural and subjective response to alcohol in treatment-seeking alcohol-dependent patients.

Spagnolo PA, Ramchandani VA, Schwandt ML, Zhang L, Blaine SK, Usala JM, Diamond KA, Phillips MJ, George DT, Momenan R, Heilig M.

Alcohol Clin Exp Res. 2014 Dec;38(12):3024-32. doi: 10.1111/acer.12581.


Pleuroscopic cryoprobe biopsies of the pleura: a feasibility and safety study.

Thomas R, Karunarathne S, Jennings B, Morey S, Chai SM, Lee YC, Phillips MJ.

Respirology. 2015 Feb;20(2):327-32. doi: 10.1111/resp.12441. Epub 2014 Dec 5.


ER contact sites define the position and timing of endosome fission.

Rowland AA, Chitwood PJ, Phillips MJ, Voeltz GK.

Cell. 2014 Nov 20;159(5):1027-1041. doi: 10.1016/j.cell.2014.10.023.


The complete mitochondrial genome of the eastern grey kangaroo (Macropus giganteus).

Dodt WG, McComish BJ, Nilsson MA, Gibb GC, Penny D, Phillips MJ.

Mitochondrial DNA A DNA Mapp Seq Anal. 2016;27(2):1366-7. doi: 10.3109/19401736.2014.947583. Epub 2014 Aug 8.


Loss of MITF expression during human embryonic stem cell differentiation disrupts retinal pigment epithelium development and optic vesicle cell proliferation.

Capowski EE, Simonett JM, Clark EM, Wright LS, Howden SE, Wallace KA, Petelinsek AM, Pinilla I, Phillips MJ, Meyer JS, Schneider BL, Thomson JA, Gamm DM.

Hum Mol Genet. 2014 Dec 1;23(23):6332-44. doi: 10.1093/hmg/ddu351. Epub 2014 Jul 9.


The regulatory T cell effector molecule fibrinogen-like protein 2 is necessary for the development of rapamycin-induced tolerance to fully MHC-mismatched murine cardiac allografts.

Urbanellis P, Shyu W, Khattar R, Wang J, Zakharova A, He W, Sadozai H, Amir AZ, Shalev I, Phillips MJ, Adeyi O, Ross H, Grant D, Levy GA, Chruscinski A.

Immunology. 2015 Jan;144(1):91-106. doi: 10.1111/imm.12354.


Molecular phylogeny, biogeography, and habitat preference evolution of marsupials.

Mitchell KJ, Pratt RC, Watson LN, Gibb GC, Llamas B, Kasper M, Edson J, Hopwood B, Male D, Armstrong KN, Meyer M, Hofreiter M, Austin J, Donnellan SC, Lee MS, Phillips MJ, Cooper A.

Mol Biol Evol. 2014 Sep;31(9):2322-30. doi: 10.1093/molbev/msu176. Epub 2014 May 30.


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