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Cover Crop Management Practices Rather Than Composition of Cover Crop Mixtures Affect Bacterial Communities in No-Till Agroecosystems.

Romdhane S, Spor A, Busset H, Falchetto L, Martin J, Bizouard F, Bru D, Breuil MC, Philippot L, Cordeau S.

Front Microbiol. 2019 Jul 9;10:1618. doi: 10.3389/fmicb.2019.01618. eCollection 2019.


Leaf-cutter ants engineer large nitrous oxide hot spots in tropical forests.

Soper FM, Sullivan BW, Osborne BB, Shaw AN, Philippot L, Cleveland CC.

Proc Biol Sci. 2019 Jan 16;286(1894):20182504. doi: 10.1098/rspb.2018.2504.


Compounded Disturbance Chronology Modulates the Resilience of Soil Microbial Communities and N-Cycle Related Functions.

Calderón K, Philippot L, Bizouard F, Breuil MC, Bru D, Spor A.

Front Microbiol. 2018 Nov 6;9:2721. doi: 10.3389/fmicb.2018.02721. eCollection 2018.


Remotely sensed canopy nitrogen correlates with nitrous oxide emissions in a lowland tropical rainforest.

Soper FM, Sullivan BW, Nasto MK, Osborne BB, Bru D, Balzotti CS, Taylor PG, Asner GP, Townsend AR, Philippot L, Porder S, Cleveland CC.

Ecology. 2018 Sep;99(9):2080-2089. doi: 10.1002/ecy.2434. Epub 2018 Jul 26.


Relative Contribution of nirK- and nirS- Bacterial Denitrifiers as Well as Fungal Denitrifiers to Nitrous Oxide Production from Dairy Manure Compost.

Maeda K, Toyoda S, Philippot L, Hattori S, Nakajima K, Ito Y, Yoshida N.

Environ Sci Technol. 2017 Dec 19;51(24):14083-14091. doi: 10.1021/acs.est.7b04017. Epub 2017 Dec 11.


Genomics and Ecology of Novel N2O-Reducing Microorganisms.

Hallin S, Philippot L, Löffler FE, Sanford RA, Jones CM.

Trends Microbiol. 2018 Jan;26(1):43-55. doi: 10.1016/j.tim.2017.07.003. Epub 2017 Aug 10. Review.


Peaks of in situ N2 O emissions are influenced by N2 O-producing and reducing microbial communities across arable soils.

Domeignoz-Horta LA, Philippot L, Peyrard C, Bru D, Breuil MC, Bizouard F, Justes E, Mary B, Léonard J, Spor A.

Glob Chang Biol. 2018 Jan;24(1):360-370. doi: 10.1111/gcb.13853. Epub 2017 Sep 13.


Spatio-Temporal Variations in the Abundance and Structure of Denitrifier Communities in Sediments Differing in Nitrate Content.

Correa-Galeote D, Tortosa G, Moreno S, Bru D, Philippot L, Bedmar EJ.

Curr Issues Mol Biol. 2017;24:71-102. doi: 10.21775/cimb.024.071. Epub 2017 Jul 6.


Effectiveness of ecological rescue for altered soil microbial communities and functions.

Calderón K, Spor A, Breuil MC, Bru D, Bizouard F, Violle C, Barnard RL, Philippot L.

ISME J. 2017 Jan;11(1):272-283. doi: 10.1038/ismej.2016.86. Epub 2016 Jun 24.


Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

Graham EB, Knelman JE, Schindlbacher A, Siciliano S, Breulmann M, Yannarell A, Beman JM, Abell G, Philippot L, Prosser J, Foulquier A, Yuste JC, Glanville HC, Jones DL, Angel R, Salminen J, Newton RJ, Bürgmann H, Ingram LJ, Hamer U, Siljanen HM, Peltoniemi K, Potthast K, Bañeras L, Hartmann M, Banerjee S, Yu RQ, Nogaro G, Richter A, Koranda M, Castle SC, Goberna M, Song B, Chatterjee A, Nunes OC, Lopes AR, Cao Y, Kaisermann A, Hallin S, Strickland MS, Garcia-Pausas J, Barba J, Kang H, Isobe K, Papaspyrou S, Pastorelli R, Lagomarsino A, Lindström ES, Basiliko N, Nemergut DR.

Front Microbiol. 2016 Feb 24;7:214. doi: 10.3389/fmicb.2016.00214. eCollection 2016.


The diversity of the N2O reducers matters for the N2O:N2 denitrification end-product ratio across an annual and a perennial cropping system.

Domeignoz-Horta LA, Spor A, Bru D, Breuil MC, Bizouard F, Léonard J, Philippot L.

Front Microbiol. 2015 Sep 24;6:971. doi: 10.3389/fmicb.2015.00971. eCollection 2015.


Plant traits related to nitrogen uptake influence plant-microbe competition.

Moreau D, Pivato B, Bru D, Busset H, Deau F, Faivre C, Matejicek A, Strbik F, Philippot L, Mougel C.

Ecology. 2015 Aug;96(8):2300-10.


Functional and structural responses of soil N-cycling microbial communities to the herbicide mesotrione: a dose-effect microcosm approach.

Crouzet O, Poly F, Bonnemoy F, Bru D, Batisson I, Bohatier J, Philippot L, Mallet C.

Environ Sci Pollut Res Int. 2016 Mar;23(5):4207-17. doi: 10.1007/s11356-015-4797-8. Epub 2015 Jun 28.


N2O production, a widespread trait in fungi.

Maeda K, Spor A, Edel-Hermann V, Heraud C, Breuil MC, Bizouard F, Toyoda S, Yoshida N, Steinberg C, Philippot L.

Sci Rep. 2015 Apr 20;5:9697. doi: 10.1038/srep09697.


Trait-based approaches for understanding microbial biodiversity and ecosystem functioning.

Krause S, Le Roux X, Niklaus PA, Van Bodegom PM, Lennon JT, Bertilsson S, Grossart HP, Philippot L, Bodelier PL.

Front Microbiol. 2014 May 27;5:251. doi: 10.3389/fmicb.2014.00251. eCollection 2014. Review.


Going back to the roots: the microbial ecology of the rhizosphere.

Philippot L, Raaijmakers JM, Lemanceau P, van der Putten WH.

Nat Rev Microbiol. 2013 Nov;11(11):789-99. doi: 10.1038/nrmicro3109. Epub 2013 Sep 23. Review.


Soil environmental conditions and microbial build-up mediate the effect of plant diversity on soil nitrifying and denitrifying enzyme activities in temperate grasslands.

Le Roux X, Schmid B, Poly F, Barnard RL, Niklaus PA, Guillaumaud N, Habekost M, Oelmann Y, Philippot L, Salles JF, Schloter M, Steinbeiss S, Weigelt A.

PLoS One. 2013 Apr 17;8(4):e61069. doi: 10.1371/journal.pone.0061069. Print 2013.


Loss in microbial diversity affects nitrogen cycling in soil.

Philippot L, Spor A, Hénault C, Bru D, Bizouard F, Jones CM, Sarr A, Maron PA.

ISME J. 2013 Aug;7(8):1609-19. doi: 10.1038/ismej.2013.34. Epub 2013 Mar 7.


Soil functional operating range linked to microbial biodiversity and community composition using denitrifiers as model guild.

Hallin S, Welsh A, Stenström J, Hallet S, Enwall K, Bru D, Philippot L.

PLoS One. 2012;7(12):e51962. doi: 10.1371/journal.pone.0051962. Epub 2012 Dec 20.


The unaccounted yet abundant nitrous oxide-reducing microbial community: a potential nitrous oxide sink.

Jones CM, Graf DR, Bru D, Philippot L, Hallin S.

ISME J. 2013 Feb;7(2):417-26. doi: 10.1038/ismej.2012.125. Epub 2012 Nov 15.


Spatial distribution of N-cycling microbial communities showed complex patterns in constructed wetland sediments.

Correa-Galeote D, Marco DE, Tortosa G, Bru D, Philippot L, Bedmar EJ.

FEMS Microbiol Ecol. 2013 Feb;83(2):340-51. doi: 10.1111/j.1574-6941.2012.01479.x. Epub 2012 Sep 24.


Distribution of bacteria and nitrogen-cycling microbial communities along constructed Technosol depth-profiles.

Hafeez F, Spor A, Breuil MC, Schwartz C, Martin-Laurent F, Philippot L.

J Hazard Mater. 2012 Sep 15;231-232:88-97. doi: 10.1016/j.jhazmat.2012.06.041. Epub 2012 Jul 1.


Standardisation of methods in soil microbiology: progress and challenges.

Philippot L, Ritz K, Pandard P, Hallin S, Martin-Laurent F.

FEMS Microbiol Ecol. 2012 Oct;82(1):1-10. doi: 10.1111/j.1574-6941.2012.01436.x. Epub 2012 Jul 13. Review.


Insights into the resistance and resilience of the soil microbial community.

Griffiths BS, Philippot L.

FEMS Microbiol Rev. 2013 Mar;37(2):112-29. doi: 10.1111/j.1574-6976.2012.00343.x. Epub 2012 Jun 1. Review.


Evidence for shifts in the structure and abundance of the microbial community in a long-term PCB-contaminated soil under bioremediation.

Petrić I, Bru D, Udiković-Kolić N, Hršak D, Philippot L, Martin-Laurent F.

J Hazard Mater. 2011 Nov 15;195:254-60. doi: 10.1016/j.jhazmat.2011.08.036. Epub 2011 Aug 17.


Towards food, feed and energy crops mitigating climate change.

Philippot L, Hallin S.

Trends Plant Sci. 2011 Sep;16(9):476-80. doi: 10.1016/j.tplants.2011.05.007. Epub 2011 Jun 21.


Influence of land-use intensity on the spatial distribution of N-cycling microorganisms in grassland soils.

Keil D, Meyer A, Berner D, Poll C, Schützenmeister A, Piepho HP, Vlasenko A, Philippot L, Schloter M, Kandeler E, Marhan S.

FEMS Microbiol Ecol. 2011 Jul;77(1):95-106. doi: 10.1111/j.1574-6941.2011.01091.x. Epub 2011 Apr 15.


Inter-laboratory evaluation of the ISO standard 11063 "Soil quality - Method to directly extract DNA from soil samples".

Petric I, Philippot L, Abbate C, Bispo A, Chesnot T, Hallin S, Laval K, Lebeau T, Lemanceau P, Leyval C, Lindström K, Pandard P, Romero E, Sarr A, Schloter M, Simonet P, Smalla K, Wilke BM, Martin-Laurent F.

J Microbiol Methods. 2011 Mar;84(3):454-60. doi: 10.1016/j.mimet.2011.01.016. Epub 2011 Jan 21.


Spatial distribution of ammonia-oxidizing bacteria and archaea across a 44-hectare farm related to ecosystem functioning.

Wessén E, Söderström M, Stenberg M, Bru D, Hellman M, Welsh A, Thomsen F, Klemedtson L, Philippot L, Hallin S.

ISME J. 2011 Jul;5(7):1213-25. doi: 10.1038/ismej.2010.206. Epub 2011 Jan 13.


Abundance and activity of nitrate reducers in an arable soil are more affected by temporal variation and soil depth than by elevated atmospheric [CO2].

Marhan S, Philippot L, Bru D, Rudolph S, Franzaring J, Högy P, Fangmeier A, Kandeler E.

FEMS Microbiol Ecol. 2011 May;76(2):209-19. doi: 10.1111/j.1574-6941.2011.01048.x. Epub 2011 Feb 14.


Distribution of high bacterial taxa across the chronosequence of two alpine glacier forelands.

Philippot L, Tscherko D, Bru D, Kandeler E.

Microb Ecol. 2011 Feb;61(2):303-12. doi: 10.1007/s00248-010-9754-y. Epub 2010 Oct 9.


Role of plant residues in determining temporal patterns of the activity, size, and structure of nitrate reducer communities in soil.

Chèneby D, Bru D, Pascault N, Maron PA, Ranjard L, Philippot L.

Appl Environ Microbiol. 2010 Nov;76(21):7136-43. doi: 10.1128/AEM.01497-10. Epub 2010 Sep 10.


Frequent freeze-thaw cycles yield diminished yet resistant and responsive microbial communities in two temperate soils: a laboratory experiment.

Stres B, Philippot L, Faganeli J, Tiedje JM.

FEMS Microbiol Ecol. 2010 Nov;74(2):323-35. doi: 10.1111/j.1574-6941.2010.00951.x. Epub 2010 Aug 23.


Determinants of the distribution of nitrogen-cycling microbial communities at the landscape scale.

Bru D, Ramette A, Saby NP, Dequiedt S, Ranjard L, Jolivet C, Arrouays D, Philippot L.

ISME J. 2011 Mar;5(3):532-42. doi: 10.1038/ismej.2010.130. Epub 2010 Aug 12.


The ecological coherence of high bacterial taxonomic ranks.

Philippot L, Andersson SG, Battin TJ, Prosser JI, Schimel JP, Whitman WB, Hallin S.

Nat Rev Microbiol. 2010 Jul;8(7):523-9. doi: 10.1038/nrmicro2367. Review.


Insights into the effect of soil pH on N(2)O and N(2) emissions and denitrifier community size and activity.

Cuhel J, Simek M, Laughlin RJ, Bru D, Chèneby D, Watson CJ, Philippot L.

Appl Environ Microbiol. 2010 Mar;76(6):1870-8. doi: 10.1128/AEM.02484-09. Epub 2010 Jan 29.


Effects of biosolids application on nitrogen dynamics and microbial structure in a saline-sodic soil of the former Lake Texcoco (Mexico).

Rojas-Oropeza M, Dendooven L, Garza-Avendaño L, Souza V, Philippot L, Cabirol N.

Bioresour Technol. 2010 Apr;101(7):2491-8. doi: 10.1016/j.biortech.2009.10.088. Epub 2009 Dec 5.


Spatial patterns of bacterial taxa in nature reflect ecological traits of deep branches of the 16S rRNA bacterial tree.

Philippot L, Bru D, Saby NP, Cuhel J, Arrouays D, Simek M, Hallin S.

Environ Microbiol. 2009 Dec;11(12):3096-104. doi: 10.1111/j.1462-2920.2009.02014.x. Epub 2009 Jul 23.


Differential responses of nitrate reducer community size, structure, and activity to tillage systems.

Chèneby D, Brauman A, Rabary B, Philippot L.

Appl Environ Microbiol. 2009 May;75(10):3180-6. doi: 10.1128/AEM.02338-08. Epub 2009 Mar 20.


Mapping field-scale spatial patterns of size and activity of the denitrifier community.

Philippot L, Cuhel J, Saby NP, Chèneby D, Chronáková A, Bru D, Arrouays D, Martin-Laurent F, Simek M.

Environ Microbiol. 2009 Jun;11(6):1518-26. doi: 10.1111/j.1462-2920.2009.01879.x. Epub 2009 Mar 2.


Response of total and nitrate-dissimilating bacteria to reduced N deposition in a spruce forest soil profile.

Kandeler E, Brune T, Enowashu E, Dörr N, Guggenberger G, Lamersdorf N, Philippot L.

FEMS Microbiol Ecol. 2009 Mar;67(3):444-54. doi: 10.1111/j.1574-6941.2008.00632.x.


Relationship between N-cycling communities and ecosystem functioning in a 50-year-old fertilization experiment.

Hallin S, Jones CM, Schloter M, Philippot L.

ISME J. 2009 May;3(5):597-605. doi: 10.1038/ismej.2008.128. Epub 2009 Jan 15.


Characterization of denitrification gene clusters of soil bacteria via a metagenomic approach.

Demanèche S, Philippot L, David MM, Navarro E, Vogel TM, Simonet P.

Appl Environ Microbiol. 2009 Jan;75(2):534-7. doi: 10.1128/AEM.01706-08. Epub 2008 Nov 14.


Effect of primary mild stresses on resilience and resistance of the nitrate reducer community to a subsequent severe stress.

Philippot L, Cregut M, Chèneby D, Bressan M, Dequiet S, Martin-Laurent F, Ranjard L, Lemanceau P.

FEMS Microbiol Lett. 2008 Aug;285(1):51-7. doi: 10.1111/j.1574-6968.2008.01210.x. Epub 2008 May 26.


Disentangling the rhizosphere effect on nitrate reducers and denitrifiers: insight into the role of root exudates.

Henry S, Texier S, Hallet S, Bru D, Dambreville C, Chèneby D, Bizouard F, Germon JC, Philippot L.

Environ Microbiol. 2008 Nov;10(11):3082-92. doi: 10.1111/j.1462-2920.2008.01599.x. Epub 2008 Apr 3.


Quantification of the detrimental effect of a single primer-template mismatch by real-time PCR using the 16S rRNA gene as an example.

Bru D, Martin-Laurent F, Philippot L.

Appl Environ Microbiol. 2008 Mar;74(5):1660-3. doi: 10.1128/AEM.02403-07. Epub 2008 Jan 11.


Relative abundances of proteobacterial membrane-bound and periplasmic nitrate reductases in selected environments.

Bru D, Sarr A, Philippot L.

Appl Environ Microbiol. 2007 Sep;73(18):5971-4. Epub 2007 Jul 13.


Abundance of narG, nirS, nirK, and nosZ genes of denitrifying bacteria during primary successions of a glacier foreland.

Kandeler E, Deiglmayr K, Tscherko D, Bru D, Philippot L.

Appl Environ Microbiol. 2006 Sep;72(9):5957-62.


Microbial succession of nitrate-reducing bacteria in the rhizosphere of Poa alpina across a glacier foreland in the Central Alps.

Deiglmayr K, Philippot L, Tscherko D, Kandeler E.

Environ Microbiol. 2006 Sep;8(9):1600-12.


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