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Functional classification of ATM variants in ataxia-telangiectasia patients.

Fiévet A, Bellanger D, Rieunier G, Dubois d'Enghien C, Sophie J, Calvas P, Carriere JP, Anheim M, Castrioto A, Flabeau O, Degos B, Ewenczyk C, Mahlaoui N, Touzot F, Suarez F, Hully M, Roubertie A, Aladjidi N, Tison F, Antoine-Poirel H, Dahan K, Doummar D, Nougues MC, Ioos C, Rougeot C, Masurel A, Bourjault C, Ginglinger E, Prieur F, Siri A, Bordigoni P, Nguyen K, Philippe N, Bellesme C, Demeocq F, Altuzarra C, Mathieu-Dramard M, Couderc F, Dörk T, Auger N, Parfait B, Abidallah K, Moncoutier V, Collet A, Stoppa-Lyonnet D, Stern MH.

Hum Mutat. 2019 Oct;40(10):1713-1730. doi: 10.1002/humu.23778. Epub 2019 May 17.


Pandoravirus Celtis Illustrates the Microevolution Processes at Work in the Giant Pandoraviridae Genomes.

Legendre M, Alempic JM, Philippe N, Lartigue A, Jeudy S, Poirot O, Ta NT, Nin S, Couté Y, Abergel C, Claverie JM.

Front Microbiol. 2019 Mar 8;10:430. doi: 10.3389/fmicb.2019.00430. eCollection 2019.


SHROOM3-FYN Interaction Regulates Nephrin Phosphorylation and Affects Albuminuria in Allografts.

Wei C, Banu K, Garzon F, Basgen JM, Philippe N, Yi Z, Liu R, Choudhuri J, Fribourg M, Liu T, Cumpelik A, Wong J, Khan M, Das B, Keung K, Salem F, Campbell KN, Kaufman L, Cravedi P, Zhang W, O'Connell PJ, He JC, Murphy B, Menon MC.

J Am Soc Nephrol. 2018 Nov;29(11):2641-2657. doi: 10.1681/ASN.2018060573. Epub 2018 Oct 19.


Effects of intensity distribution changes on performance and on training loads quantification.

Jean-Christophe H, Philippe N, Michel S, Jean-François T, François D.

Biol Sport. 2018 Mar;35(1):67-74. doi: 10.5114/biolsport.2018.70753. Epub 2017 Oct 12.


Two new convenient syntheses of 14C-squalene from turbinaric acid.

Philippe N, Rivron L, De Bruin B, Schofield J, Roy S.

J Labelled Comp Radiopharm. 2018 Oct;61(12):878-884. doi: 10.1002/jlcr.3672. Epub 2018 Sep 10.


Diversity and evolution of the emerging Pandoraviridae family.

Legendre M, Fabre E, Poirot O, Jeudy S, Lartigue A, Alempic JM, Beucher L, Philippe N, Bertaux L, Christo-Foroux E, Labadie K, Couté Y, Abergel C, Claverie JM.

Nat Commun. 2018 Jun 11;9(1):2285. doi: 10.1038/s41467-018-04698-4.


Cabazitaxel is more active than first-generation taxanes in ABCB1(+) cell lines due to its reduced affinity for P-glycoprotein.

Duran GE, Derdau V, Weitz D, Philippe N, Blankenstein J, Atzrodt J, Sémiond D, Gianolio DA, Macé S, Sikic BI.

Cancer Chemother Pharmacol. 2018 Jun;81(6):1095-1103. doi: 10.1007/s00280-018-3572-1. Epub 2018 Apr 19.


New chimeric RNAs in acute myeloid leukemia.

Rufflé F, Audoux J, Boureux A, Beaumeunier S, Gaillard JB, Bou Samra E, Megarbane A, Cassinat B, Chomienne C, Alves R, Riquier S, Gilbert N, Lemaitre JM, Bacq-Daian D, Bougé AL, Philippe N, Commes T.

Version 2. F1000Res. 2017 Aug 2 [revised 2017 Jan 1];6. pii: ISCB Comm J-1302. doi: 10.12688/f1000research.11352.2. eCollection 2017.


DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.

Audoux J, Philippe N, Chikhi R, Salson M, Gallopin M, Gabriel M, Le Coz J, Drouineau E, Commes T, Gautheret D.

Genome Biol. 2017 Dec 28;18(1):243. doi: 10.1186/s13059-017-1372-2.


SimBA: A methodology and tools for evaluating the performance of RNA-Seq bioinformatic pipelines.

Audoux J, Salson M, Grosset CF, Beaumeunier S, Holder JM, Commes T, Philippe N.

BMC Bioinformatics. 2017 Sep 29;18(1):428. doi: 10.1186/s12859-017-1831-5.


MOG antibody-related disorders: common features and uncommon presentations.

Cobo-Calvo Á, Ruiz A, D'Indy H, Poulat AL, Carneiro M, Philippe N, Durand-Dubief F, Deiva K, Vukusic S, Desportes V, Marignier R.

J Neurol. 2017 Sep;264(9):1945-1955. doi: 10.1007/s00415-017-8583-z. Epub 2017 Aug 2.


Mapping Residency Global Health Experiences to the ACGME Family Medicine Milestones.

Grissom MO, Iroku-Malize T, Peila R, Perez M, Philippe N.

Fam Med. 2017 Jul;49(7):553-557.


Novel Therapeutics Identification for Fibrosis in Renal Allograft Using Integrative Informatics Approach.

Li L, Greene I, Readhead B, Menon MC, Kidd BA, Uzilov AV, Wei C, Philippe N, Schroppel B, He JC, Chen R, Dudley JT, Murphy B.

Sci Rep. 2017 Jan 4;7:39487. doi: 10.1038/srep39487.


The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of Proteobacteria.

Ji B, Zhang SD, Zhang WJ, Rouy Z, Alberto F, Santini CL, Mangenot S, Gagnot S, Philippe N, Pradel N, Zhang L, Tempel S, Li Y, Médigue C, Henrissat B, Coutinho PM, Barbe V, Talla E, Wu LF.

Environ Microbiol. 2017 Mar;19(3):1103-1119. doi: 10.1111/1462-2920.13637. Epub 2017 Feb 1.


On the evaluation of the fidelity of supervised classifiers in the prediction of chimeric RNAs.

Beaumeunier S, Audoux J, Boureux A, Ruffle F, Commes T, Philippe N, Alves R.

BioData Min. 2016 Nov 2;9:34. eCollection 2016.


Long non-coding RNAs in human early embryonic development and their potential in ART.

Bouckenheimer J, Assou S, Riquier S, Hou C, Philippe N, Sansac C, Lavabre-Bertrand T, Commes T, Lemaître JM, Boureux A, De Vos J.

Hum Reprod Update. 2016 Dec;23(1):19-40. Epub 2016 Sep 21. Review.


In Vivo Evolution of Bacterial Resistance in Two Cases of Enterobacter aerogenes Infections during Treatment with Imipenem.

Philippe N, Maigre L, Santini S, Pinet E, Claverie JM, Davin-Régli AV, Pagès JM, Masi M.

PLoS One. 2015 Sep 23;10(9):e0138828. doi: 10.1371/journal.pone.0138828. eCollection 2015.


Phenotypic changes contributing to Enterobacter gergoviae biocide resistance.

Périamé M, Philippe N, Condell O, Fanning S, Pagès JM, Davin-Regli A.

Lett Appl Microbiol. 2015 Aug;61(2):121-9. doi: 10.1111/lam.12435. Epub 2015 May 29.


[Information for parents of children with sickle cell trait detected by neonatal screening: A 10-year experience].

Joly P, Badens C, Fekih S, Philippe N, Merono F, Thuret I, Pondarré C.

Arch Pediatr. 2015 May;22(5):562-3. doi: 10.1016/j.arcped.2015.02.020. Epub 2015 Apr 1. French. No abstract available.


Genome analysis of the first Marseilleviridae representative from Australia indicates that most of its genes contribute to virus fitness.

Doutre G, Philippe N, Abergel C, Claverie JM.

J Virol. 2014 Dec;88(24):14340-9. doi: 10.1128/JVI.02414-14. Epub 2014 Oct 1.


Combining DGE and RNA-sequencing data to identify new polyA+ non-coding transcripts in the human genome.

Philippe N, Bou Samra E, Boureux A, Mancheron A, Rufflé F, Bai Q, De Vos J, Rivals E, Commes T.

Nucleic Acids Res. 2014 Mar;42(5):2820-32. doi: 10.1093/nar/gkt1300. Epub 2013 Dec 18.


MicroRNAs: new candidates for the regulation of the human cumulus-oocyte complex.

Assou S, Al-edani T, Haouzi D, Philippe N, Lecellier CH, Piquemal D, Commes T, Aït-Ahmed O, Dechaud H, Hamamah S.

Hum Reprod. 2013 Nov;28(11):3038-49. doi: 10.1093/humrep/det321. Epub 2013 Jul 30.


Pandoraviruses: amoeba viruses with genomes up to 2.5 Mb reaching that of parasitic eukaryotes.

Philippe N, Legendre M, Doutre G, Couté Y, Poirot O, Lescot M, Arslan D, Seltzer V, Bertaux L, Bruley C, Garin J, Claverie JM, Abergel C.

Science. 2013 Jul 19;341(6143):281-6. doi: 10.1126/science.1239181. Erratum in: Science. 2013 Sep 27;341(6153):1452.


Comparative genomic analysis provides insights into the evolution and niche adaptation of marine Magnetospira sp. QH-2 strain.

Ji B, Zhang SD, Arnoux P, Rouy Z, Alberto F, Philippe N, Murat D, Zhang WJ, Rioux JB, Ginet N, Sabaty M, Mangenot S, Pradel N, Tian J, Yang J, Zhang L, Zhang W, Pan H, Henrissat B, Coutinho PM, Li Y, Xiao T, Médigue C, Barbe V, Pignol D, Talla E, Wu LF.

Environ Microbiol. 2014 Feb;16(2):525-44. doi: 10.1111/1462-2920.12180. Epub 2013 Jul 10.


CRAC: an integrated approach to the analysis of RNA-seq reads.

Philippe N, Salson M, Commes T, Rivals E.

Genome Biol. 2013 Mar 28;14(3):R30. doi: 10.1186/gb-2013-14-3-r30.


Preliminary crystallographic analysis of the Megavirus superoxide dismutase.

Lartigue A, Philippe N, Jeudy S, Abergel C.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Dec 1;68(Pt 12):1557-9. doi: 10.1107/S174430911204657X. Epub 2012 Nov 28.


Involvement of a common progenitor cell in core binding factor acute myeloid leukaemia associated with mastocytosis.

Cornet E, Dumézy F, Roumier C, Lepelley P, Jouy N, Philippe N, Renneville A, Berthon C, Nelken B, Quesnel B, Preudhomme C.

Leuk Res. 2012 Nov;36(11):1330-3. doi: 10.1016/j.leukres.2012.07.001. Epub 2012 Aug 4.


Querying large read collections in main memory: a versatile data structure.

Philippe N, Salson M, Lecroq T, Léonard M, Commes T, Rivals E.

BMC Bioinformatics. 2011 Jun 17;12:242. doi: 10.1186/1471-2105-12-242.


Duplication at chromosome 2q31.1-q31.2 in a family presenting syndactyly and nystagmus.

Ghoumid J, Andrieux J, Sablonnière B, Odent S, Philippe N, Zanlonghi X, Saugier-Veber P, Bardyn T, Manouvrier-Hanu S, Holder-Espinasse M.

Eur J Hum Genet. 2011 Nov;19(11):1198-201. doi: 10.1038/ejhg.2011.95. Epub 2011 Jun 8.


ppGpp is the major source of growth rate control in E. coli.

Potrykus K, Murphy H, Philippe N, Cashel M.

Environ Microbiol. 2011 Mar;13(3):563-575. doi: 10.1111/j.1462-2920.2010.02357.x. Epub 2010 Oct 15.


Prognostic impact of isocitrate dehydrogenase enzyme isoforms 1 and 2 mutations in acute myeloid leukemia: a study by the Acute Leukemia French Association group.

Boissel N, Nibourel O, Renneville A, Gardin C, Reman O, Contentin N, Bordessoule D, Pautas C, de Revel T, Quesnel B, Huchette P, Philippe N, Geffroy S, Terre C, Thomas X, Castaigne S, Dombret H, Preudhomme C.

J Clin Oncol. 2010 Aug 10;28(23):3717-23. doi: 10.1200/JCO.2010.28.2285. Epub 2010 Jul 12.


Incidence and prognostic value of TET2 alterations in de novo acute myeloid leukemia achieving complete remission.

Nibourel O, Kosmider O, Cheok M, Boissel N, Renneville A, Philippe N, Dombret H, Dreyfus F, Quesnel B, Geffroy S, Quentin S, Roche-Lestienne C, Cayuela JM, Roumier C, Fenaux P, Vainchenker W, Bernard OA, Soulier J, Fontenay M, Preudhomme C.

Blood. 2010 Aug 19;116(7):1132-5. doi: 10.1182/blood-2009-07-234484. Epub 2010 May 20.


An MCP-like protein interacts with the MamK cytoskeleton and is involved in magnetotaxis in Magnetospirillum magneticum AMB-1.

Philippe N, Wu LF.

J Mol Biol. 2010 Jul 16;400(3):309-22. doi: 10.1016/j.jmb.2010.05.011. Epub 2010 May 13.


A second actin-like MamK protein in Magnetospirillum magneticum AMB-1 encoded outside the genomic magnetosome island.

Rioux JB, Philippe N, Pereira S, Pignol D, Wu LF, Ginet N.

PLoS One. 2010 Feb 10;5(2):e9151. doi: 10.1371/journal.pone.0009151.


Extensive mutational status of genes and clinical outcome in pediatric acute myeloid leukemia.

Lapillonne H, Llopis L, Auvrignon A, Renneville A, Labopin M, Mazingue F, Perot C, Lai JL, Philippe N, Ballerini P, Zurawski V, Adam M, Douay L, Leverger G, Landman-Parker J, Preudhomme C.

Leukemia. 2010 Jan;24(1):205-9. doi: 10.1038/leu.2009.172. Epub 2009 Sep 17. No abstract available.


Wilms tumor 1 gene mutations are associated with a higher risk of recurrence in young adults with acute myeloid leukemia: a study from the Acute Leukemia French Association.

Renneville A, Boissel N, Zurawski V, Llopis L, Biggio V, Nibourel O, Philippe N, Thomas X, Dombret H, Preudhomme C.

Cancer. 2009 Aug 15;115(16):3719-27. doi: 10.1002/cncr.24442.


Using reads to annotate the genome: influence of length, background distribution, and sequence errors on prediction capacity.

Philippe N, Boureux A, Bréhélin L, Tarhio J, Commes T, Rivals E.

Nucleic Acids Res. 2009 Aug;37(15):e104. doi: 10.1093/nar/gkp492. Epub 2009 Jun 16.


High frequency of RUNX1 biallelic alteration in acute myeloid leukemia secondary to familial platelet disorder.

Preudhomme C, Renneville A, Bourdon V, Philippe N, Roche-Lestienne C, Boissel N, Dhedin N, André JM, Cornillet-Lefebvre P, Baruchel A, Mozziconacci MJ, Sobol H.

Blood. 2009 May 28;113(22):5583-7. doi: 10.1182/blood-2008-07-168260. Epub 2009 Apr 8.


Evolution of penicillin-binding protein 2 concentration and cell shape during a long-term experiment with Escherichia coli.

Philippe N, Pelosi L, Lenski RE, Schneider D.

J Bacteriol. 2009 Feb;191(3):909-21. doi: 10.1128/JB.01419-08. Epub 2008 Dec 1.


WITHDRAWN: Dynamic Distribution of Functional TatB-TatC Complexes in Escherichia coli Cells.

Xiong Y, Zhao S, Santini CL, Philippe N, Xu J, Wu LF.

J Mol Biol. 2008 Nov 20. [Epub ahead of print] No abstract available.


Death and cannibalism in a seasonal environment facilitate bacterial coexistence.

Rozen DE, Philippe N, Arjan de Visser J, Lenski RE, Schneider D.

Ecol Lett. 2009 Jan;12(1):34-44. doi: 10.1111/j.1461-0248.2008.01257.x. Epub 2008 Oct 29.


Another pedigree with familial acute myeloid leukemia and germline CEBPA mutation.

Renneville A, Mialou V, Philippe N, Kagialis-Girard S, Biggio V, Zabot MT, Thomas X, Bertrand Y, Preudhomme C.

Leukemia. 2009 Apr;23(4):804-6. doi: 10.1038/leu.2008.294. Epub 2008 Oct 23. No abstract available.


Effect of lopinavir/ritonavir monotherapy on quality of life and self-reported symptoms among antiretroviral-naive patients: results of the MONARK trial.

Spire B, Marcellin F, Cohen-Codar I, Flandre P, Boue F, Dellamonica P, Raffi F, Norton M, Van Philippe N, Delfraissy JF.

Antivir Ther. 2008;13(4):591-9.


Invasive aspergillosis and allogeneic hematopoietic stem cell transplantation in children: a 15-year experience.

Crassard N, Hadden H, Pondarré C, Hadden R, Galambrun C, Piens MA, Pracros JP, Souillet G, Basset T, Berthier JC, Philippe N, Bertrand Y.

Transpl Infect Dis. 2008 Jun;10(3):177-83. doi: 10.1111/j.1399-3062.2008.00304.x. Epub 2008 Mar 4.


Invasive aspergillosis in a paediatric haematology department: a 15-year review.

Crassard N, Hadden H, Piens MA, Pondarré C, Hadden R, Galambrun C, Pracros JP, Souillet G, Basset T, Berthier JC, Philippe N, Bertrand Y.

Mycoses. 2008 Mar;51(2):109-16. doi: 10.1111/j.1439-0507.2007.01449.x.


BCR-ABL mutants spread resistance to non-mutated cells through a paracrine mechanism.

Liu J, Joha S, Idziorek T, Corm S, Hetuin D, Philippe N, Preudhomme C, Quesnel B.

Leukemia. 2008 Apr;22(4):791-9. doi: 10.1038/leu.2008.3. Epub 2008 Jan 24.


RUNX1 DNA-binding mutations and RUNX1-PRDM16 cryptic fusions in BCR-ABL+ leukemias are frequently associated with secondary trisomy 21 and may contribute to clonal evolution and imatinib resistance.

Roche-Lestienne C, Deluche L, Corm S, Tigaud I, Joha S, Philippe N, Geffroy S, Laï JL, Nicolini FE, Preudhomme C; Fi-LMC group.

Blood. 2008 Apr 1;111(7):3735-41. doi: 10.1182/blood-2007-07-102533. Epub 2008 Jan 17.


Recurrent in-frame insertion in C/EBPalpha TAD2 region is a polymorphism without prognostic value in AML.

Biggio V, Renneville A, Nibourel O, Philippe N, Terriou L, Roumier C, Amouyel P, Cottel D, Castaigne S, Dombret H, Thomas X, Fenaux P, Preudhomme C; French alfa group.

Leukemia. 2008 Mar;22(3):655-7. Epub 2007 Sep 13. No abstract available.


Evolution of global regulatory networks during a long-term experiment with Escherichia coli.

Philippe N, Crozat E, Lenski RE, Schneider D.

Bioessays. 2007 Sep;29(9):846-60. Review.


Incidence and prognostic impact of c-Kit, FLT3, and Ras gene mutations in core binding factor acute myeloid leukemia (CBF-AML).

Boissel N, Leroy H, Brethon B, Philippe N, de Botton S, Auvrignon A, Raffoux E, Leblanc T, Thomas X, Hermine O, Quesnel B, Baruchel A, Leverger G, Dombret H, Preudhomme C; Acute Leukemia French Association (ALFA); Leucémies Aiguës Myéloblastiques de l'Enfant (LAME) Cooperative Groups.

Leukemia. 2006 Jun;20(6):965-70.


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