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Items: 1 to 50 of 70

1.

Improved ZnS nanoparticle properties through sequential NanoFermentation.

Moon JW, Eskelsen JR, Ivanov IN, Jacobs CB, Jang GG, Kidder MK, Joshi PC, Armstrong BL, Pierce EM, Oremland RS, Phelps TJ, Graham DE.

Appl Microbiol Biotechnol. 2018 Oct;102(19):8329-8339. doi: 10.1007/s00253-018-9245-5. Epub 2018 Aug 4.

PMID:
30078139
2.

Impacts of Methane on Carbon Dioxide Storage in Brine Formations.

Soltanian MR, Amooie MA, Cole DR, Darrah TH, Graham DE, Pfiffner SM, Phelps TJ, Moortgat J.

Ground Water. 2018 Mar;56(2):176-186. doi: 10.1111/gwat.12633. Epub 2018 Jan 16.

PMID:
29341122
3.

The response of archaeal species to seasonal variables in a subtropical aerated soil: insight into the low abundant methanogens.

Xie W, Jiao N, Ma C, Fang S, Phelps TJ, Zhu R, Zhang C.

Appl Microbiol Biotechnol. 2017 Aug;101(16):6505-6515. doi: 10.1007/s00253-017-8349-7. Epub 2017 May 30.

PMID:
28555278
4.

Temporal Dynamics of In-Field Bioreactor Populations Reflect the Groundwater System and Respond Predictably to Perturbation.

King AJ, Preheim SP, Bailey KL, Robeson MS 2nd, Roy Chowdhury T, Crable BR, Hurt RA Jr, Mehlhorn T, Lowe KA, Phelps TJ, Palumbo AV, Brandt CC, Brown SD, Podar M, Zhang P, Lancaster WA, Poole F, Watson DB, W Fields M, Chandonia JM, Alm EJ, Zhou J, Adams MW, Hazen TC, Arkin AP, Elias DA.

Environ Sci Technol. 2017 Mar 7;51(5):2879-2889. doi: 10.1021/acs.est.6b04751. Epub 2017 Feb 10.

5.

Manufacturing demonstration of microbially mediated zinc sulfide nanoparticles in pilot-plant scale reactors.

Moon JW, Phelps TJ, Fitzgerald CL Jr, Lind RF, Elkins JG, Jang GG, Joshi PC, Kidder M, Armstrong BL, Watkins TR, Ivanov IN, Graham DE.

Appl Microbiol Biotechnol. 2016 Sep;100(18):7921-31. doi: 10.1007/s00253-016-7556-y. Epub 2016 Apr 27.

PMID:
27118014
6.

Metagenomes from thawing low-soil-organic-carbon mineral cryosols and permafrost of the canadian high arctic.

Chauhan A, Layton AC, Vishnivetskaya TA, Williams D, Pfiffner SM, Rekepalli B, Stackhouse B, Lau MC, Phelps TJ, Mykytczuk N, Ronholm J, Whyte L, Onstott TC, Sayler GS.

Genome Announc. 2014 Nov 20;2(6). pii: e01217-14. doi: 10.1128/genomeA.01217-14.

7.

Community analysis of plant biomass-degrading microorganisms from Obsidian Pool, Yellowstone National Park.

Vishnivetskaya TA, Hamilton-Brehm SD, Podar M, Mosher JJ, Palumbo AV, Phelps TJ, Keller M, Elkins JG.

Microb Ecol. 2015 Feb;69(2):333-45. doi: 10.1007/s00248-014-0500-8. Epub 2014 Oct 16.

PMID:
25319238
8.

Trends and future challenges in sampling the deep terrestrial biosphere.

Wilkins MJ, Daly RA, Mouser PJ, Trexler R, Sharma S, Cole DR, Wrighton KC, Biddle JF, Denis EH, Fredrickson JK, Kieft TL, Onstott TC, Peterson L, Pfiffner SM, Phelps TJ, Schrenk MO.

Front Microbiol. 2014 Sep 12;5:481. doi: 10.3389/fmicb.2014.00481. eCollection 2014.

9.

Stoichiometry and temperature sensitivity of methanogenesis and CO2 production from saturated polygonal tundra in Barrow, Alaska.

Roy Chowdhury T, Herndon EM, Phelps TJ, Elias DA, Gu B, Liang L, Wullschleger SD, Graham DE.

Glob Chang Biol. 2015 Feb;21(2):722-37. doi: 10.1111/gcb.12762. Epub 2014 Nov 26.

PMID:
25308891
10.

Scalable production of microbially mediated zinc sulfide nanoparticles and application to functional thin films.

Moon JW, Ivanov IN, Joshi PC, Armstrong BL, Wang W, Jung H, Rondinone AJ, Jellison GE Jr, Meyer HM 3rd, Jang GG, Meisner RA, Duty CE, Phelps TJ.

Acta Biomater. 2014 Oct;10(10):4474-83. doi: 10.1016/j.actbio.2014.06.005. Epub 2014 Jun 14.

PMID:
24932768
11.

Hexavalent chromium reduction under fermentative conditions with lactate stimulated native microbial communities.

Somenahally AC, Mosher JJ, Yuan T, Podar M, Phelps TJ, Brown SD, Yang ZK, Hazen TC, Arkin AP, Palumbo AV, Van Nostrand JD, Zhou J, Elias DA.

PLoS One. 2013 Dec 23;8(12):e83909. doi: 10.1371/journal.pone.0083909. eCollection 2013.

12.

Does aspartic acid racemization constrain the depth limit of the subsurface biosphere?

Onstott TC, Magnabosco C, Aubrey AD, Burton AS, Dworkin JP, Elsila JE, Grunsfeld S, Cao BH, Hein JE, Glavin DP, Kieft TL, Silver BJ, Phelps TJ, van Heerden E, Opperman DJ, Bada JL.

Geobiology. 2014 Jan;12(1):1-19. doi: 10.1111/gbi.12069. Epub 2013 Dec 2.

PMID:
24289240
13.

Commercial DNA extraction kits impact observed microbial community composition in permafrost samples.

Vishnivetskaya TA, Layton AC, Lau MC, Chauhan A, Cheng KR, Meyers AJ, Murphy JR, Rogers AW, Saarunya GS, Williams DE, Pfiffner SM, Biggerstaff JP, Stackhouse BT, Phelps TJ, Whyte L, Sayler GS, Onstott TC.

FEMS Microbiol Ecol. 2014 Jan;87(1):217-30. doi: 10.1111/1574-6941.12219. Epub 2013 Oct 17.

14.

Scalable economic extracellular synthesis of CdS nanostructured particles by a non-pathogenic thermophile.

Moon JW, Ivanov IN, Duty CE, Love LJ, Rondinone AJ, Wang W, Li YL, Madden AS, Mosher JJ, Hu MZ, Suresh AK, Rawn CJ, Jung H, Lauf RJ, Phelps TJ.

J Ind Microbiol Biotechnol. 2013 Nov;40(11):1263-71. doi: 10.1007/s10295-013-1321-3. Epub 2013 Sep 5.

PMID:
24005990
15.

Kinetics of methane hydrate decomposition studied via in situ low temperature X-ray powder diffraction.

Everett SM, Rawn CJ, Keffer DJ, Mull DL, Payzant EA, Phelps TJ.

J Phys Chem A. 2013 May 2;117(17):3593-8. doi: 10.1021/jp4020178. Epub 2013 Apr 16.

PMID:
23557375
16.

Microbial communities involved in biological ammonium removal from coal combustion wastewaters.

Vishnivetskaya TA, Fisher LS, Brodie GA, Phelps TJ.

Microb Ecol. 2013 Jul;66(1):49-59. doi: 10.1007/s00248-012-0152-5. Epub 2013 Jan 13.

PMID:
23314095
17.

Draft genome sequences for two metal-reducing Pelosinus fermentans strains isolated from a Cr(VI)-contaminated site and for type strain R7.

Brown SD, Podar M, Klingeman DM, Johnson CM, Yang ZK, Utturkar SM, Land ML, Mosher JJ, Hurt RA Jr, Phelps TJ, Palumbo AV, Arkin AP, Hazen TC, Elias DA.

J Bacteriol. 2012 Sep;194(18):5147-8. doi: 10.1128/JB.01174-12.

18.

Microbial community succession during lactate amendment and electron acceptor limitation reveals a predominance of metal-reducing Pelosinus spp.

Mosher JJ, Phelps TJ, Podar M, Hurt RA Jr, Campbell JH, Drake MM, Moberly JG, Schadt CW, Brown SD, Hazen TC, Arkin AP, Palumbo AV, Faybishenko BA, Elias DA.

Appl Environ Microbiol. 2012 Apr;78(7):2082-91. doi: 10.1128/AEM.07165-11. Epub 2012 Jan 20.

19.

Microbes in thawing permafrost: the unknown variable in the climate change equation.

Graham DE, Wallenstein MD, Vishnivetskaya TA, Waldrop MP, Phelps TJ, Pfiffner SM, Onstott TC, Whyte LG, Rivkina EM, Gilichinsky DA, Elias DA, Mackelprang R, VerBerkmoes NC, Hettich RL, Wagner D, Wullschleger SD, Jansson JK.

ISME J. 2012 Apr;6(4):709-12. doi: 10.1038/ismej.2011.163. Epub 2011 Nov 17. No abstract available.

20.

Correlation of genomic and physiological traits of thermoanaerobacter species with biofuel yields.

Hemme CL, Fields MW, He Q, Deng Y, Lin L, Tu Q, Mouttaki H, Zhou A, Feng X, Zuo Z, Ramsay BD, He Z, Wu L, Van Nostrand J, Xu J, Tang YJ, Wiegel J, Phelps TJ, Zhou J.

Appl Environ Microbiol. 2011 Nov;77(22):7998-8008. doi: 10.1128/AEM.05677-11. Epub 2011 Sep 23.

21.

Monodispersed biocompatible silver sulfide nanoparticles: facile extracellular biosynthesis using the γ-proteobacterium, Shewanella oneidensis.

Suresh AK, Doktycz MJ, Wang W, Moon JW, Gu B, Meyer HM 3rd, Hensley DK, Allison DP, Phelps TJ, Pelletier DA.

Acta Biomater. 2011 Dec;7(12):4253-8. doi: 10.1016/j.actbio.2011.07.007. Epub 2011 Jul 14.

PMID:
21798382
22.

Fiber optic sensing technology for detecting gas hydrate formation and decomposition.

Rawn CJ, Leeman JR, Ulrich SM, Alford JE, Phelps TJ, Madden ME.

Rev Sci Instrum. 2011 Feb;82(2):024501. doi: 10.1063/1.3514983.

PMID:
21361619
23.

Simultaneous leaching and carbon sequestration in constrained aqueous solutions.

Moon JW, Cho KS, Moberly JG, Roh Y, Phelps TJ.

Environ Geochem Health. 2011 Dec;33(6):543-57. doi: 10.1007/s10653-010-9370-2. Epub 2011 Jan 19.

PMID:
21246259
24.

Biofabrication of discrete spherical gold nanoparticles using the metal-reducing bacterium Shewanella oneidensis.

Suresh AK, Pelletier DA, Wang W, Broich ML, Moon JW, Gu B, Allison DP, Joy DC, Phelps TJ, Doktycz MJ.

Acta Biomater. 2011 May;7(5):2148-52. doi: 10.1016/j.actbio.2011.01.023. Epub 2011 Jan 15.

PMID:
21241833
25.

Crystallite sizes and lattice parameters of nano-biomagnetite particles.

Moon JW, Rawn CJ, Rondinone AJ, Wang W, Vali H, Yeary LW, Love LJ, Kirkham MJ, Gu B, Phelps TJ.

J Nanosci Nanotechnol. 2010 Dec;10(12):8298-306.

PMID:
21121331
26.

Effects of engineered cerium oxide nanoparticles on bacterial growth and viability.

Pelletier DA, Suresh AK, Holton GA, McKeown CK, Wang W, Gu B, Mortensen NP, Allison DP, Joy DC, Allison MR, Brown SD, Phelps TJ, Doktycz MJ.

Appl Environ Microbiol. 2010 Dec;76(24):7981-9. doi: 10.1128/AEM.00650-10. Epub 2010 Oct 15.

27.

Large-scale production of magnetic nanoparticles using bacterial fermentation.

Moon JW, Rawn CJ, Rondinone AJ, Love LJ, Roh Y, Everett SM, Lauf RJ, Phelps TJ.

J Ind Microbiol Biotechnol. 2010 Oct;37(10):1023-31. doi: 10.1007/s10295-010-0749-y. Epub 2010 Jun 11.

PMID:
20544257
28.

Silver nanocrystallites: biofabrication using Shewanella oneidensis, and an evaluation of their comparative toxicity on gram-negative and gram-positive bacteria.

Suresh AK, Pelletier DA, Wang W, Moon JW, Gu B, Mortensen NP, Allison DP, Joy DC, Phelps TJ, Doktycz MJ.

Environ Sci Technol. 2010 Jul 1;44(13):5210-5. doi: 10.1021/es903684r.

PMID:
20509652
29.

Establishment and metabolic analysis of a model microbial community for understanding trophic and electron accepting interactions of subsurface anaerobic environments.

Miller LD, Mosher JJ, Venkateswaran A, Yang ZK, Palumbo AV, Phelps TJ, Podar M, Schadt CW, Keller M.

BMC Microbiol. 2010 May 24;10:149. doi: 10.1186/1471-2180-10-149.

30.

Caldicellulosiruptor obsidiansis sp. nov., an anaerobic, extremely thermophilic, cellulolytic bacterium isolated from Obsidian Pool, Yellowstone National Park.

Hamilton-Brehm SD, Mosher JJ, Vishnivetskaya T, Podar M, Carroll S, Allman S, Phelps TJ, Keller M, Elkins JG.

Appl Environ Microbiol. 2010 Feb;76(4):1014-20. doi: 10.1128/AEM.01903-09. Epub 2009 Dec 18.

31.

Degeneration of biogenic superparamagnetic magnetite.

Li YL, Pfiffner SM, Dyar MD, Vali H, Konhauser K, Cole DR, Rondinone AJ, Phelps TJ.

Geobiology. 2009 Jan;7(1):25-34. doi: 10.1111/j.1472-4669.2008.00186.x.

PMID:
19200144
32.

Donor-dependent extent of uranium reduction for bioremediation of contaminated sediment microcosms.

Madden AS, Palumbo AV, Ravel B, Vishnivetskaya TA, Phelps TJ, Schadt CW, Brandt CC.

J Environ Qual. 2009 Jan 13;38(1):53-60. doi: 10.2134/jeq2008.0071. Print 2009 Jan-Feb.

PMID:
19141795
33.

Challenges for coring deep permafrost on Earth and Mars.

Pfiffner SM, Onstott TC, Ruskeeniemi T, Talikka M, Bakermans C, McGown D, Chan E, Johnson A, Phelps TJ, Le Puil M, Difurio SA, Pratt LM, Stotler R, Frape S, Telling J, Lollar BS, Neill I, Zerbin B.

Astrobiology. 2008 Jun;8(3):623-38. doi: 10.1089/ast.2007.0159.

PMID:
18680412
34.

Estimates of biogenic methane production rates in deep marine sediments at Hydrate Ridge, Cascadia margin.

Colwell FS, Boyd S, Delwiche ME, Reed DW, Phelps TJ, Newby DT.

Appl Environ Microbiol. 2008 Jun;74(11):3444-52. doi: 10.1128/AEM.02114-07. Epub 2008 Mar 14.

35.

Micron-pore-sized metallic filter tube membranes for filtration of particulates and water purification.

Phelps TJ, Palumbo AV, Bischoff BL, Miller CJ, Fagan LA, McNeilly MS, Judkins RR.

J Microbiol Methods. 2008 Jul;74(1):10-6. Epub 2007 Aug 24.

PMID:
17884208
36.

Microbial uranium immobilization independent of nitrate reduction.

Madden AS, Smith AC, Balkwill DL, Fagan LA, Phelps TJ.

Environ Microbiol. 2007 Sep;9(9):2321-30.

PMID:
17686028
37.

Microbial formation of lanthanide-substituted magnetites by Thermoanaerobacter sp. TOR-39.

Moon JW, Roh Y, Yeary LW, Lauf RJ, Rawn CJ, Love LJ, Phelps TJ.

Extremophiles. 2007 Nov;11(6):859-67. Epub 2007 Aug 3.

PMID:
17673945
38.

Microbial preparation of metal-substituted magnetite nanoparticles.

Moon JW, Roh Y, Lauf RJ, Vali H, Yeary LW, Phelps TJ.

J Microbiol Methods. 2007 Jul;70(1):150-8. Epub 2007 Apr 29.

PMID:
17532071
39.

Extracellular synthesis of magnetite and metal-substituted magnetite nanoparticles.

Roh Y, Vali H, Phelps TJ, Moon JW.

J Nanosci Nanotechnol. 2006 Nov;6(11):3517-20.

PMID:
17252802
40.

Physicochemical and mineralogical characterization of soil-saprolite cores from a field research site, Tennessee.

Moon JW, Roh Y, Phelps TJ, Phillips DH, Watson DB, Kim YJ, Brooks SC.

J Environ Qual. 2006 Aug 9;35(5):1731-41. Print 2006 Sep-Oct.

PMID:
16899744
41.

Metal reduction and iron biomineralization by a psychrotolerant Fe(III)-reducing bacterium, Shewanella sp. strain PV-4.

Roh Y, Gao H, Vali H, Kennedy DW, Yang ZK, Gao W, Dohnalkova AC, Stapleton RD, Moon JW, Phelps TJ, Fredrickson JK, Zhou J.

Appl Environ Microbiol. 2006 May;72(5):3236-44.

42.

A magnetocaloric pump for microfluidic applications.

Love LJ, Jansen JF, McKnight TE, Roh Y, Phelps TJ.

IEEE Trans Nanobioscience. 2004 Jun;3(2):101-10.

PMID:
15382742
43.

A modular injection system, multilevel sampler, and manifold for tracer tests.

Mailloux BJ, Fuller ME, Rose GF, Onstott TC, DeFlaun MF, Alvarez E, Hemingway C, Hallet RB, Phelps TJ, Griffin T.

Ground Water. 2003 Nov-Dec;41(6):816-27.

PMID:
14649864
44.

Indigenous and contaminant microbes in ultradeep mines.

Onstott TC, Moser DP, Pfiffner SM, Fredrickson JK, Brockman FJ, Phelps TJ, White DC, Peacock A, Balkwill D, Hoover R, Krumholz LR, Borscik M, Kieft TL, Wilson R.

Environ Microbiol. 2003 Nov;5(11):1168-91.

PMID:
14641596
45.
46.
47.

Molecular characterization and diversity of thermophilic iron-reducing enrichment cultures from deep subsurface environments.

Zhou J, Liu S, Xia B, Zhang C, Palumbo AV, Phelps TJ.

J Appl Microbiol. 2001 Jan;90(1):96-105.

48.

Low-substrate regulated microaerophilic behavior as a stress response of aquatic and soil bacteria.

Mazumder R, Pinkart HC, Alban PS, Phelps TJ, Benoit RE.

Curr Microbiol. 2000 Aug;41(2):79-83.

PMID:
10856370
49.

Iron reduction by psychrotrophic enrichment cultures.

Zhang C, Stapleton RD, Zhou J, Palumbo AV, Phelps TJ.

FEMS Microbiol Ecol. 1999 Dec 1;30(4):367-371.

50.

Determining chemotactic responses by two subsurface microaerophiles using a simplified capillary assay method.

Mazumder R, Phelps TJ, Krieg NR, Benoit RE.

J Microbiol Methods. 1999 Sep;37(3):255-63.

PMID:
10480269

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