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Items: 16

1.

Microbiome and metabolome data integration provides insight into health and disease.

Shaffer M, Armstrong AJS, Phelan VV, Reisdorph N, Lozupone CA.

Transl Res. 2017 Nov;189:51-64. doi: 10.1016/j.trsl.2017.07.001. Epub 2017 Jul 14. Review.

2.

Natural products as mediators of disease.

Garg N, Luzzatto-Knaan T, Melnik AV, Caraballo-Rodríguez AM, Floros DJ, Petras D, Gregor R, Dorrestein PC, Phelan VV.

Nat Prod Rep. 2017 Feb 1;34(2):194-219. doi: 10.1039/c6np00063k. Epub 2016 Nov 22. Review.

3.

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking.

Wang M, Carver JJ, Phelan VV, Sanchez LM, Garg N, Peng Y, Nguyen DD, Watrous J, Kapono CA, Luzzatto-Knaan T, Porto C, Bouslimani A, Melnik AV, Meehan MJ, Liu WT, Crüsemann M, Boudreau PD, Esquenazi E, Sandoval-Calderón M, Kersten RD, Pace LA, Quinn RA, Duncan KR, Hsu CC, Floros DJ, Gavilan RG, Kleigrewe K, Northen T, Dutton RJ, Parrot D, Carlson EE, Aigle B, Michelsen CF, Jelsbak L, Sohlenkamp C, Pevzner P, Edlund A, McLean J, Piel J, Murphy BT, Gerwick L, Liaw CC, Yang YL, Humpf HU, Maansson M, Keyzers RA, Sims AC, Johnson AR, Sidebottom AM, Sedio BE, Klitgaard A, Larson CB, P CAB, Torres-Mendoza D, Gonzalez DJ, Silva DB, Marques LM, Demarque DP, Pociute E, O'Neill EC, Briand E, Helfrich EJN, Granatosky EA, Glukhov E, Ryffel F, Houson H, Mohimani H, Kharbush JJ, Zeng Y, Vorholt JA, Kurita KL, Charusanti P, McPhail KL, Nielsen KF, Vuong L, Elfeki M, Traxler MF, Engene N, Koyama N, Vining OB, Baric R, Silva RR, Mascuch SJ, Tomasi S, Jenkins S, Macherla V, Hoffman T, Agarwal V, Williams PG, Dai J, Neupane R, Gurr J, Rodríguez AMC, Lamsa A, Zhang C, Dorrestein K, Duggan BM, Almaliti J, Allard PM, Phapale P, Nothias LF, Alexandrov T, Litaudon M, Wolfender JL, Kyle JE, Metz TO, Peryea T, Nguyen DT, VanLeer D, Shinn P, Jadhav A, Müller R, Waters KM, Shi W, Liu X, Zhang L, Knight R, Jensen PR, Palsson BO, Pogliano K, Linington RG, Gutiérrez M, Lopes NP, Gerwick WH, Moore BS, Dorrestein PC, Bandeira N.

Nat Biotechnol. 2016 Aug 9;34(8):828-837. doi: 10.1038/nbt.3597.

4.

Microbial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome.

Quinn RA, Phelan VV, Whiteson KL, Garg N, Bailey BA, Lim YW, Conrad DJ, Dorrestein PC, Rohwer FL.

ISME J. 2016 Jun;10(6):1483-98. doi: 10.1038/ismej.2015.207. Epub 2015 Dec 1.

5.

Mass Spectrometry Analysis of Pseudomonas aeruginosa Treated with Azithromycin.

Phelan VV, Fang J, Dorrestein PC.

J Am Soc Mass Spectrom. 2015 Jun;26(6):873-7. doi: 10.1007/s13361-015-1101-6. Epub 2015 Mar 24.

6.

Impact of a transposon insertion in phzF2 on the specialized metabolite production and interkingdom interactions of Pseudomonas aeruginosa.

Phelan VV, Moree WJ, Aguilar J, Cornett DS, Koumoutsi A, Noble SM, Pogliano K, Guerrero CA, Dorrestein PC.

J Bacteriol. 2014 May;196(9):1683-93. doi: 10.1128/JB.01258-13. Epub 2014 Feb 14.

7.

MS/MS networking guided analysis of molecule and gene cluster families.

Nguyen DD, Wu CH, Moree WJ, Lamsa A, Medema MH, Zhao X, Gavilan RG, Aparicio M, Atencio L, Jackson C, Ballesteros J, Sanchez J, Watrous JD, Phelan VV, van de Wiel C, Kersten RD, Mehnaz S, De Mot R, Shank EA, Charusanti P, Nagarajan H, Duggan BM, Moore BS, Bandeira N, Palsson BØ, Pogliano K, Gutiérrez M, Dorrestein PC.

Proc Natl Acad Sci U S A. 2013 Jul 9;110(28):E2611-20. doi: 10.1073/pnas.1303471110. Epub 2013 Jun 24.

8.

Microbial metabolic exchange in 3D.

Watrous JD, Phelan VV, Hsu CC, Moree WJ, Duggan BM, Alexandrov T, Dorrestein PC.

ISME J. 2013 Apr;7(4):770-80. doi: 10.1038/ismej.2012.155. Epub 2013 Jan 3.

9.

Interkingdom metabolic transformations captured by microbial imaging mass spectrometry.

Moree WJ, Phelan VV, Wu CH, Bandeira N, Cornett DS, Duggan BM, Dorrestein PC.

Proc Natl Acad Sci U S A. 2012 Aug 21;109(34):13811-6. doi: 10.1073/pnas.1206855109. Epub 2012 Aug 6.

10.

Primer on agar-based microbial imaging mass spectrometry.

Yang JY, Phelan VV, Simkovsky R, Watrous JD, Trial RM, Fleming TC, Wenter R, Moore BS, Golden SS, Pogliano K, Dorrestein PC.

J Bacteriol. 2012 Nov;194(22):6023-8. doi: 10.1128/JB.00823-12. Epub 2012 Jul 20. Review.

11.

Microbial metabolic exchange--the chemotype-to-phenotype link.

Phelan VV, Liu WT, Pogliano K, Dorrestein PC.

Nat Chem Biol. 2011 Dec 15;8(1):26-35. doi: 10.1038/nchembio.739.

12.

Bacillus cereus phosphopentomutase is an alkaline phosphatase family member that exhibits an altered entry point into the catalytic cycle.

Panosian TD, Nannemann DP, Watkins GR, Phelan VV, McDonald WH, Wadzinski BE, Bachmann BO, Iverson TM.

J Biol Chem. 2011 Mar 11;286(10):8043-54. doi: 10.1074/jbc.M110.201350. Epub 2010 Dec 30.

13.

Lipophilic mediated assays for beta-hematin inhibitors.

Carter MD, Phelan VV, Sandlin RD, Bachmann BO, Wright DW.

Comb Chem High Throughput Screen. 2010 Mar;13(3):285-92.

14.

Adenylation enzyme characterization using gamma -(18)O(4)-ATP pyrophosphate exchange.

Phelan VV, Du Y, McLean JA, Bachmann BO.

Chem Biol. 2009 May 29;16(5):473-8. doi: 10.1016/j.chembiol.2009.04.007.

15.

Reassembly of anthramycin biosynthetic gene cluster by using recombinogenic cassettes.

Hu Y, Phelan VV, Farnet CM, Zazopoulos E, Bachmann BO.

Chembiochem. 2008 Jul 2;9(10):1603-8. doi: 10.1002/cbic.200800029.

PMID:
18512205
16.

Phosphonopeptide K-26 biosynthetic intermediates in Astrosporangium hypotensionis.

Ntai I, Phelan VV, Bachmann BO.

Chem Commun (Camb). 2006 Nov 21;(43):4518-20.

PMID:
17283804

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