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Items: 30

1.

Shedding of Yellow Fever Virus From an Imported Case in the Netherlands After Travel to Brazil.

Phan MVT, Mendonca Melo M, van Nood E, Aron G, Kreeft-Voermans JJC, Koopmans MPG, Reusken C, GeurtsvanKessel CH, Cotten M.

Open Forum Infect Dis. 2020 Jan 13;7(2):ofaa020. doi: 10.1093/ofid/ofaa020. eCollection 2020 Feb.

2.

Norovirus outbreak in a natural playground: A One Health approach.

Sips GJ, Dirven MJG, Donkervoort JT, van Kolfschoten FM, Schapendonk CME, Phan MVT, Bloem A, van Leeuwen AF, Trompenaars ME, Koopmans MPG, van der Eijk AA, de Graaf M, Fanoy EB.

Zoonoses Public Health. 2020 Feb 9. doi: 10.1111/zph.12689. [Epub ahead of print]

PMID:
32037743
3.

Correction to: Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia.

Kamau E, Oketch JW, de Laurent ZR, Phan MVT, Agoti CN, Nokes DJ, Cotten M.

BMC Genomics. 2020 Jan 28;21(1):83. doi: 10.1186/s12864-020-6498-z.

4.

Virus Metagenomics in Farm Animals: A Systematic Review.

Kwok KTT, Nieuwenhuijse DF, Phan MVT, Koopmans MPG.

Viruses. 2020 Jan 16;12(1). pii: E107. doi: 10.3390/v12010107. Review.

5.

Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia.

Kamau E, Oketch JW, de Laurent ZR, Phan MVT, Agoti CN, Nokes DJ, Cotten M.

BMC Genomics. 2020 Jan 2;21(1):5. doi: 10.1186/s12864-019-6400-z. Erratum in: BMC Genomics. 2020 Jan 28;21(1):83.

6.

Metavirome Sequencing to Evaluate Norovirus Diversity in Sewage and Related Bioaccumulated Oysters.

Strubbia S, Schaeffer J, Oude Munnink BB, Besnard A, Phan MVT, Nieuwenhuijse DF, de Graaf M, Schapendonk CME, Wacrenier C, Cotten M, Koopmans MPG, Le Guyader FS.

Front Microbiol. 2019 Oct 17;10:2394. doi: 10.3389/fmicb.2019.02394. eCollection 2019.

7.

Characterization of Norovirus and Other Human Enteric Viruses in Sewage and Stool Samples Through Next-Generation Sequencing.

Strubbia S, Phan MVT, Schaeffer J, Koopmans M, Cotten M, Le Guyader FS.

Food Environ Virol. 2019 Dec;11(4):400-409. doi: 10.1007/s12560-019-09402-3. Epub 2019 Aug 24.

8.

Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant.

Agoti CN, Phan MVT, Munywoki PK, Githinji G, Medley GF, Cane PA, Kellam P, Cotten M, Nokes DJ.

Sci Rep. 2019 Jul 11;9(1):10076. doi: 10.1038/s41598-019-46509-w.

9.

The Utility of Data Transformation for Alignment, De Novo Assembly and Classification of Short Read Virus Sequences.

Tapinos A, Constantinides B, Phan MVT, Kouchaki S, Cotten M, Robertson DL.

Viruses. 2019 Apr 26;11(5). pii: E394. doi: 10.3390/v11050394.

10.

Complete Genome Characterization of Eight Human Parainfluenza Viruses from the Netherlands.

Phan MVT, Arron G, GeurtsvanKessel CH, Huisman RC, Molenkamp R, Koopmans MPG, Cotten M.

Microbiol Resour Announc. 2019 Apr 11;8(15). pii: e00125-19. doi: 10.1128/MRA.00125-19.

11.

Complete Genome Sequences of Dengue Virus Type 2 Strains from Kilifi, Kenya.

Kamau E, Agoti CN, Ngoi JM, de Laurent ZR, Gitonga J, Cotten M, Phan MVT, Nokes DJ, Delwart E, Sanders E, Warimwe GM.

Microbiol Resour Announc. 2019 Jan 24;8(4). pii: e01566-18. doi: 10.1128/MRA.01566-18. eCollection 2019 Jan.

12.

Genomic sequence of yellow fever virus from a Dutch traveller returning from the Gambia-Senegal region, the Netherlands, November 2018.

Phan MV, Murad SD, van der Eijk AA, Metselaar HJ, Hartog H, Harinck F, GeurtsvanKessel CH, Molenkamp R, Cotten M, Koopmans MP.

Euro Surveill. 2019 Jan;24(4). doi: 10.2807/1560-7917.ES.2019.24.4.1800684.

13.

Identification and characterization of Coronaviridae genomes from Vietnamese bats and rats based on conserved protein domains.

Phan MVT, Ngo Tri T, Hong Anh P, Baker S, Kellam P, Cotten M.

Virus Evol. 2018 Dec 15;4(2):vey035. doi: 10.1093/ve/vey035. eCollection 2018 Jul.

14.

Complete Genome Sequences of Six Measles Virus Strains.

Phan MVT, Schapendonk CME, Oude Munnink BB, Koopmans MPG, de Swart RL, Cotten M.

Genome Announc. 2018 Mar 29;6(13). pii: e00184-18. doi: 10.1128/genomeA.00184-18.

15.

Whole-Genome Next-Generation Sequencing to Study Within-Host Evolution of Norovirus (NoV) Among Immunocompromised Patients With Chronic NoV Infection.

van Beek J, de Graaf M, Smits S, Schapendonk CME, Verjans GMGM, Vennema H, van der Eijk AA, Phan MVT, Cotten M, Koopmans M.

J Infect Dis. 2017 Dec 19;216(12):1513-1524. doi: 10.1093/infdis/jix520.

PMID:
29029115
16.

Characterization of Posa and Posa-like virus genomes in fecal samples from humans, pigs, rats, and bats collected from a single location in Vietnam.

Oude Munnink BB, Phan MVT; VIZIONS Consortium, Simmonds P, Koopmans MPG, Kellam P, van der Hoek L, Cotten M.

Virus Evol. 2017 Aug 23;3(2):vex022. doi: 10.1093/ve/vex022. eCollection 2017 Jul.

17.

A26 Transmission patterns and evolution of RSV in a community outbreak identified by genomic analysis.

Agoti CN, Munywoki PK, Phan MVT, Otieno JR, Kamau E, Bett A, Kombe I, Githinji G, Medley GF, Cane PA, Kellam P, Cotton M, Nokes DJ.

Virus Evol. 2017 Mar 5;3(Suppl 1). pii: vew036.025. doi: 10.1093/ve/vew036.025. eCollection 2017 Mar. No abstract available.

18.

Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotaviruses and a putative zoonotic infection.

Phan MVT, Anh PH, Cuong NV, Munnink BBO, van der Hoek L, My PT, Tri TN, Bryant JE, Baker S, Thwaites G, Woolhouse M, Kellam P, Rabaa MA, Cotten M; VIZIONS Consortium.

Virus Evol. 2016 Oct 3;2(2):vew027. doi: 10.1093/ve/vew027. eCollection 2016 Jul.

19.

Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases.

Arias A, Watson SJ, Asogun D, Tobin EA, Lu J, Phan MVT, Jah U, Wadoum REG, Meredith L, Thorne L, Caddy S, Tarawalie A, Langat P, Dudas G, Faria NR, Dellicour S, Kamara A, Kargbo B, Kamara BO, Gevao S, Cooper D, Newport M, Horby P, Dunning J, Sahr F, Brooks T, Simpson AJH, Groppelli E, Liu G, Mulakken N, Rhodes K, Akpablie J, Yoti Z, Lamunu M, Vitto E, Otim P, Owilli C, Boateng I, Okoror L, Omomoh E, Oyakhilome J, Omiunu R, Yemisis I, Adomeh D, Ehikhiametalor S, Akhilomen P, Aire C, Kurth A, Cook N, Baumann J, Gabriel M, Wölfel R, Di Caro A, Carroll MW, Günther S, Redd J, Naidoo D, Pybus OG, Rambaut A, Kellam P, Goodfellow I, Cotten M.

Virus Evol. 2016 Jun 22;2(1):vew016. doi: 10.1093/ve/vew016. eCollection 2016 Jan.

20.

Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis.

Agoti CN, Munywoki PK, Phan MVT, Otieno JR, Kamau E, Bett A, Kombe I, Githinji G, Medley GF, Cane PA, Kellam P, Cotten M, Nokes DJ.

Virus Evol. 2017 Mar 11;3(1):vex006. doi: 10.1093/ve/vex006. eCollection 2017 Jan.

21.

Virus genomes reveal factors that spread and sustained the Ebola epidemic.

Dudas G, Carvalho LM, Bedford T, Tatem AJ, Baele G, Faria NR, Park DJ, Ladner JT, Arias A, Asogun D, Bielejec F, Caddy SL, Cotten M, D'Ambrozio J, Dellicour S, Di Caro A, Diclaro JW, Duraffour S, Elmore MJ, Fakoli LS, Faye O, Gilbert ML, Gevao SM, Gire S, Gladden-Young A, Gnirke A, Goba A, Grant DS, Haagmans BL, Hiscox JA, Jah U, Kugelman JR, Liu D, Lu J, Malboeuf CM, Mate S, Matthews DA, Matranga CB, Meredith LW, Qu J, Quick J, Pas SD, Phan MVT, Pollakis G, Reusken CB, Sanchez-Lockhart M, Schaffner SF, Schieffelin JS, Sealfon RS, Simon-Loriere E, Smits SL, Stoecker K, Thorne L, Tobin EA, Vandi MA, Watson SJ, West K, Whitmer S, Wiley MR, Winnicki SM, Wohl S, Wölfel R, Yozwiak NL, Andersen KG, Blyden SO, Bolay F, Carroll MW, Dahn B, Diallo B, Formenty P, Fraser C, Gao GF, Garry RF, Goodfellow I, Günther S, Happi CT, Holmes EC, Kargbo B, Keïta S, Kellam P, Koopmans MPG, Kuhn JH, Loman NJ, Magassouba N, Naidoo D, Nichol ST, Nyenswah T, Palacios G, Pybus OG, Sabeti PC, Sall A, Ströher U, Wurie I, Suchard MA, Lemey P, Rambaut A.

Nature. 2017 Apr 20;544(7650):309-315. doi: 10.1038/nature22040. Epub 2017 Apr 12.

22.

Genome Sequences of a Novel Vietnamese Bat Bunyavirus.

Oude Munnink BB, Phan MV, van der Hoek L, Kellam P, Cotten M; VIZIONS Consortium.

Genome Announc. 2016 Dec 22;4(6). pii: e01366-16. doi: 10.1128/genomeA.01366-16.

23.

Severe acute respiratory infection caused by swine influenza virus in a child necessitating extracorporeal membrane oxygenation (ECMO), the Netherlands, October 2016.

Fraaij PL, Wildschut ED, Houmes RJ, Swaan CM, Hoebe CJ, de Jonge HC, Tolsma P, de Kleer I, Pas SD, Oude Munnink BB, Phan MV, Bestebroer TM, Roosenhoff RS, van Kampen JJ, Cotten M, Beerens N, Fouchier RA, van den Kerkhof JH, Timen A, Koopmans MP.

Euro Surveill. 2016 Dec 1;21(48). pii: 30416. doi: 10.2807/1560-7917.ES.2016.21.48.30416.

24.

A Novel Astrovirus-Like RNA Virus Detected in Human Stool.

Oude Munnink BB, Cotten M, Canuti M, Deijs M, Jebbink MF, van Hemert FJ, Phan MV, Bakker M, Jazaeri Farsani SM, Kellam P, van der Hoek L.

Virus Evol. 2016 Mar 2;2(1):vew005. eCollection 2016 Jan.

25.

Complete Genome Characterization of Two Wild-Type Measles Viruses from Vietnamese Infants during the 2014 Outbreak.

Oude Munnink BB, Phan MV, Kellam P, Cotten M; VIZIONS Consortium.

Genome Announc. 2016 Apr 14;4(2). pii: e00250-16. doi: 10.1128/genomeA.00250-16.

26.

The impact of environmental and climatic variation on the spatiotemporal trends of hospitalized pediatric diarrhea in Ho Chi Minh City, Vietnam.

Thompson CN, Zelner JL, Nhu Tdo H, Phan MV, Hoang Le P, Nguyen Thanh H, Vu Thuy D, Minh Nguyen N, Ha Manh T, Van Hoang Minh T, Lu Lan V, Nguyen Van Vinh C, Tran Tinh H, von Clemm E, Storch H, Thwaites G, Grenfell BT, Baker S.

Health Place. 2015 Sep;35:147-54. doi: 10.1016/j.healthplace.2015.08.001. Epub 2015 Sep 22.

27.

A prospective multi-center observational study of children hospitalized with diarrhea in Ho Chi Minh City, Vietnam.

Thompson CN, Phan MV, Hoang NV, Minh PV, Vinh NT, Thuy CT, Nga TT, Rabaa MA, Duy PT, Dung TT, Phat VV, Nga TV, Tu le TP, Tuyen HT, Yoshihara K, Jenkins C, Duong VT, Phuc HL, Tuyet PT, Ngoc NM, Vinh H, Chinh NT, Thuong TC, Tuan HM, Hien TT, Campbell JI, Chau NV, Thwaites G, Baker S.

Am J Trop Med Hyg. 2015 May;92(5):1045-52. doi: 10.4269/ajtmh.14-0655. Epub 2015 Mar 23.

28.

Deep sequencing of norovirus genomes defines evolutionary patterns in an urban tropical setting.

Cotten M, Petrova V, Phan MV, Rabaa MA, Watson SJ, Ong SH, Kellam P, Baker S.

J Virol. 2014 Oct;88(19):11056-69. doi: 10.1128/JVI.01333-14. Epub 2014 Jul 23.

29.

Intravenous thrombolysis.

Nguyen TH, Truong AT, Ngo MB, Bui CT, Dinh QV, Doan TC, Nguyen LT, Phan TC, Phan MV, Nguyen TV, Le TV.

Int J Stroke. 2010 Dec;5(6):516. doi: 10.1111/j.1747-4949.2010.00525.x. No abstract available.

PMID:
21050414
30.

Patients with thrombolysed stroke in Vietnam have an excellent outcome: results from the Vietnam Thrombolysis Registry.

Nguyen TH, Truong AL, Ngo MB, Bui CT, Dinh QV, Doan TC, Nguyen LT, Phan TC, Phan MV, Nguyen TV, Le TV.

Eur J Neurol. 2010 Sep;17(9):1188-92. doi: 10.1111/j.1468-1331.2010.02995.x. Epub 2010 Mar 17.

PMID:
20236303

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