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Actionable Mutation Profiles of Non-Small Cell Lung Cancer patients from Vietnamese population.

Dang AH, Tran VU, Tran TT, Thi Pham HA, Le DT, Nguyen L, Nguyen NV, Thi Nguyen TH, Nguyen CV, Le HT, Thi Nguyen ML, Le VT, Nguyen PH, Vo BT, Thi Dao HT, Nguyen LT, Van Nguyen TC, Bui QN, Nguyen LH, Nguyen NH, Thi Nguyen QT, Le TX, Do TT, Dinh KT, Do HN, Phan MD, Nguyen HN, Tran LS, Giang H.

Sci Rep. 2020 Feb 17;10(1):2707. doi: 10.1038/s41598-020-59744-3.


Shedding of Yellow Fever Virus From an Imported Case in the Netherlands After Travel to Brazil.

Phan MVT, Mendonca Melo M, van Nood E, Aron G, Kreeft-Voermans JJC, Koopmans MPG, Reusken C, GeurtsvanKessel CH, Cotten M.

Open Forum Infect Dis. 2020 Jan 13;7(2):ofaa020. doi: 10.1093/ofid/ofaa020. eCollection 2020 Feb.


Chronic Stress Induces Maladaptive Behaviors by Activating Corticotropin-Releasing Hormone Signaling in the Mouse Oval Bed Nucleus of the Stria Terminalis.

Hu P, Liu J, Maita I, Kwok C, Gu E, Gergues MM, Kelada F, Phan M, Zhou JN, Swaab DF, Pang Z, Lucassen PJ, Roepke TA, Samuels BA.

J Neurosci. 2020 Feb 11. pii: 2410-19. doi: 10.1523/JNEUROSCI.2410-19.2020. [Epub ahead of print]


TraDIS-Xpress: a high-resolution whole-genome assay identifies novel mechanisms of triclosan action and resistance.

Yasir M, Turner AK, Bastkowski S, Baker D, Page AJ, Telatin A, Phan MD, Monahan L, Savva GM, Darling A, Webber MA, Charles IG.

Genome Res. 2020 Feb 12. doi: 10.1101/gr.254391.119. [Epub ahead of print]


Norovirus outbreak in a natural playground: A One Health approach.

Sips GJ, Dirven MJG, Donkervoort JT, van Kolfschoten FM, Schapendonk CME, Phan MVT, Bloem A, van Leeuwen AF, Trompenaars ME, Koopmans MPG, van der Eijk AA, de Graaf M, Fanoy EB.

Zoonoses Public Health. 2020 Feb 9. doi: 10.1111/zph.12689. [Epub ahead of print]


Correction to: Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia.

Kamau E, Oketch JW, de Laurent ZR, Phan MVT, Agoti CN, Nokes DJ, Cotten M.

BMC Genomics. 2020 Jan 28;21(1):83. doi: 10.1186/s12864-020-6498-z.


Integrating multiple genomic technologies to investigate an outbreak of carbapenemase-producing Enterobacter hormaechei.

Roberts LW, Harris PNA, Forde BM, Ben Zakour NL, Catchpoole E, Stanton-Cook M, Phan MD, Sidjabat HE, Bergh H, Heney C, Gawthorne JA, Lipman J, Allworth A, Chan KG, Chong TM, Yin WF, Schembri MA, Paterson DL, Beatson SA.

Nat Commun. 2020 Jan 24;11(1):466. doi: 10.1038/s41467-019-14139-5.


A Mixed-Methods Evaluation of a Novel Food Pantry in a Pediatric Primary Care Center.

Hickey E, Phan M, Beck AF, Burkhardt MC, Klein MD.

Clin Pediatr (Phila). 2020 Mar;59(3):278-284. doi: 10.1177/0009922819900960. Epub 2020 Jan 23.


Virus Metagenomics in Farm Animals: A Systematic Review.

Kwok KTT, Nieuwenhuijse DF, Phan MVT, Koopmans MPG.

Viruses. 2020 Jan 16;12(1). pii: E107. doi: 10.3390/v12010107. Review.


Evaluation of a Liquid Biopsy Protocol using Ultra-Deep Massive Parallel Sequencing for Detecting and Quantifying Circulation Tumor DNA in Colorectal Cancer Patients.

Nguyen HT, Tran DH, Ngo QD, Pham HT, Tran TT, Tran VU, Pham TN, Le TK, Le NT, Nguyen NM, Vo BT, Nguyen LT, Nguyen TV, Bui QTN, Nguyen HN, Luong BA, Le LGH, Do DM, Do TT, Hoang AV, Dinh KT, Phan MD, Tran LS, Giang H, Nguyen HN.

Cancer Invest. 2020 Feb;38(2):85-93. doi: 10.1080/07357907.2020.1713350. Epub 2020 Jan 24.


The Production, Quality Control, and Characterization of ZED8, a CD8-Specific 89Zr-Labeled Immuno-PET Clinical Imaging Agent.

Gill H, Seipert R, Carroll VM, Gouasmat A, Yin J, Ogasawara A, de Jong I, Phan MM, Wang X, Yang J, Ilovich O, Marik J, Williams SP.

AAPS J. 2020 Jan 3;22(2):22. doi: 10.1208/s12248-019-0392-0.


Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia.

Kamau E, Oketch JW, de Laurent ZR, Phan MVT, Agoti CN, Nokes DJ, Cotten M.

BMC Genomics. 2020 Jan 2;21(1):5. doi: 10.1186/s12864-019-6400-z. Erratum in: BMC Genomics. 2020 Jan 28;21(1):83.


The plasma peptides of breast versus ovarian cancer.

Dufresne J, Bowden P, Thavarajah T, Florentinus-Mefailoski A, Chen ZZ, Tucholska M, Norzin T, Ho MT, Phan M, Mohamed N, Ravandi A, Stanton E, Slutsky AS, Dos Santos CC, Romaschin A, Marshall JC, Addison C, Malone S, Heyland D, Scheltens P, Killestein J, Teunissen C, Diamandis EP, Siu KWM, Marshall JG.

Clin Proteomics. 2019 Dec 23;16:43. doi: 10.1186/s12014-019-9262-0. eCollection 2019.


Children's cancer pain in a world of the opioid epidemic: Challenges and opportunities.

Fortier MA, Yang S, Phan MT, Tomaszewski DM, Jenkins BN, Kain ZN.

Pediatr Blood Cancer. 2019 Dec 18:e28124. doi: 10.1002/pbc.28124. [Epub ahead of print]


Ultra-deep massively parallel sequencing with unique molecular identifier tagging achieves comparable performance to droplet digital PCR for detection and quantification of circulating tumor DNA from lung cancer patients.

Tran LS, Pham HT, Tran VU, Tran TT, Dang AH, Le DT, Nguyen SL, Nguyen NV, Nguyen TV, Vo BT, Dao HT, Nguyen NH, Tran TH, Nguyen CV, Pham PC, Dang-Mai AT, Dinh-Nguyen TK, Phan VH, Do TT, Truong Dinh K, Do HN, Phan MD, Giang H, Nguyen HN.

PLoS One. 2019 Dec 16;14(12):e0226193. doi: 10.1371/journal.pone.0226193. eCollection 2019.


VariCarta: A Comprehensive Database of Harmonized Genomic Variants Found in Autism Spectrum Disorder Sequencing Studies.

Belmadani M, Jacobson M, Holmes N, Phan M, Nguyen T, Pavlidis P, Rogic S.

Autism Res. 2019 Dec;12(12):1728-1736. doi: 10.1002/aur.2236. Epub 2019 Nov 9.


Metavirome Sequencing to Evaluate Norovirus Diversity in Sewage and Related Bioaccumulated Oysters.

Strubbia S, Schaeffer J, Oude Munnink BB, Besnard A, Phan MVT, Nieuwenhuijse DF, de Graaf M, Schapendonk CME, Wacrenier C, Cotten M, Koopmans MPG, Le Guyader FS.

Front Microbiol. 2019 Oct 17;10:2394. doi: 10.3389/fmicb.2019.02394. eCollection 2019.


Transient exposure to novel high temperatures reshapes coastal phytoplankton communities.

Kling JD, Lee MD, Fu F, Phan MD, Wang X, Qu P, Hutchins DA.

ISME J. 2020 Feb;14(2):413-424. doi: 10.1038/s41396-019-0525-6. Epub 2019 Oct 21.


Complex Multilevel Control of Hemolysin Production by Uropathogenic Escherichia coli.

Nhu NTK, Phan MD, Forde BM, Murthy AMV, Peters KM, Day CJ, Poole J, Kidd TJ, Welch RA, Jennings MP, Ulett GC, Sweet MJ, Beatson SA, Schembri MA.

mBio. 2019 Oct 1;10(5). pii: e02248-19. doi: 10.1128/mBio.02248-19.


Bioinformatic and Molecular Analysis of Inverse Autotransporters from Escherichia coli.

Goh KGK, Moriel DG, Hancock SJ, Phan MD, Schembri MA.

mSphere. 2019 Aug 28;4(4). pii: e00572-19. doi: 10.1128/mSphere.00572-19.


Unlocking the Potential of Magnetotactic Bacteria as Magnetic Hyperthermia Agents.

Gandia D, Gandarias L, Rodrigo I, Robles-García J, Das R, Garaio E, García JÁ, Phan MH, Srikanth H, Orue I, Alonso J, Muela A, Fdez-Gubieda ML.

Small. 2019 Oct;15(41):e1902626. doi: 10.1002/smll.201902626. Epub 2019 Aug 27.


Characterization of Norovirus and Other Human Enteric Viruses in Sewage and Stool Samples Through Next-Generation Sequencing.

Strubbia S, Phan MVT, Schaeffer J, Koopmans M, Cotten M, Le Guyader FS.

Food Environ Virol. 2019 Dec;11(4):400-409. doi: 10.1007/s12560-019-09402-3. Epub 2019 Aug 24.


CODE STROKE ALERT-Concept and Development of a Novel Open-Source Platform to Streamline Acute Stroke Management.

Seah HM, Burney M, Phan M, Shell D, Wu J, Zhou K, Brooks O, Coulton B, Maingard J, Tang J, Yazdabadi G, Tahayori B, Barras C, Kok HK, Chandra R, Thijs V, Brooks DM, Asadi H.

Front Neurol. 2019 Jul 31;10:725. doi: 10.3389/fneur.2019.00725. eCollection 2019.


Population dynamics of an Escherichia coli ST131 lineage during recurrent urinary tract infection.

Forde BM, Roberts LW, Phan MD, Peters KM, Fleming BA, Russell CW, Lenherr SM, Myers JB, Barker AP, Fisher MA, Chong TM, Yin WF, Chan KG, Schembri MA, Mulvey MA, Beatson SA.

Nat Commun. 2019 Aug 13;10(1):3643. doi: 10.1038/s41467-019-11571-5.


Mycobacterium tuberculosis requires glyoxylate shunt and reverse methylcitrate cycle for lactate and pyruvate metabolism.

Serafini A, Tan L, Horswell S, Howell S, Greenwood DJ, Hunt DM, Phan MD, Schembri M, Monteleone M, Montague CR, Britton W, Garza-Garcia A, Snijders AP, VanderVen B, Gutierrez MG, West NP, de Carvalho LPS.

Mol Microbiol. 2019 Oct;112(4):1284-1307. doi: 10.1111/mmi.14362. Epub 2019 Aug 23.


Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant.

Agoti CN, Phan MVT, Munywoki PK, Githinji G, Medley GF, Cane PA, Kellam P, Cotten M, Nokes DJ.

Sci Rep. 2019 Jul 11;9(1):10076. doi: 10.1038/s41598-019-46509-w.


Metabolomic Insights into the Effects of Breast Milk Versus Formula Milk Feeding in Infants.

Phan M, Momin SR, Senn MK, Wood AC.

Curr Nutr Rep. 2019 Sep;8(3):295-306. doi: 10.1007/s13668-019-00284-2. Review.


2H/1H variation in microbial lipids is controlled by NADPH metabolism.

Wijker RS, Sessions AL, Fuhrer T, Phan M.

Proc Natl Acad Sci U S A. 2019 Jun 18;116(25):12173-12182. doi: 10.1073/pnas.1818372116. Epub 2019 May 31.


Expansion of Human NK Cells Using K562 Cells Expressing OX40 Ligand and Short Exposure to IL-21.

Kweon S, Phan MT, Chun S, Yu H, Kim J, Kim S, Lee J, Ali AK, Lee SH, Kim SK, Doh J, Cho D.

Front Immunol. 2019 Apr 24;10:879. doi: 10.3389/fimmu.2019.00879. eCollection 2019.


Unique structural features of a bacterial autotransporter adhesin suggest mechanisms for interaction with host macromolecules.

Paxman JJ, Lo AW, Sullivan MJ, Panjikar S, Kuiper M, Whitten AE, Wang G, Luan CH, Moriel DG, Tan L, Peters KM, Phan MD, Gee CL, Ulett GC, Schembri MA, Heras B.

Nat Commun. 2019 Apr 29;10(1):1967. doi: 10.1038/s41467-019-09814-6.


The Utility of Data Transformation for Alignment, De Novo Assembly and Classification of Short Read Virus Sequences.

Tapinos A, Constantinides B, Phan MVT, Kouchaki S, Cotten M, Robertson DL.

Viruses. 2019 Apr 26;11(5). pii: E394. doi: 10.3390/v11050394.


Complete Genome Characterization of Eight Human Parainfluenza Viruses from the Netherlands.

Phan MVT, Arron G, GeurtsvanKessel CH, Huisman RC, Molenkamp R, Koopmans MPG, Cotten M.

Microbiol Resour Announc. 2019 Apr 11;8(15). pii: e00125-19. doi: 10.1128/MRA.00125-19.


Variation in hemolysin A expression between uropathogenic Escherichia coli isolates determines NLRP3-dependent vs. -independent macrophage cell death and host colonization.

Murthy AMV, Sullivan MJ, Nhu NTK, Lo AW, Phan MD, Peters KM, Boucher D, Schroder K, Beatson SA, Ulett GC, Schembri MA, Sweet MJ.

FASEB J. 2019 Jun;33(6):7437-7450. doi: 10.1096/fj.201802100R. Epub 2019 Mar 14.


Uropathogenic Escherichia coli employs both evasion and resistance to subvert innate immune-mediated zinc toxicity for dissemination.

Stocks CJ, Phan MD, Achard MES, Nhu NTK, Condon ND, Gawthorne JA, Lo AW, Peters KM, McEwan AG, Kapetanovic R, Schembri MA, Sweet MJ.

Proc Natl Acad Sci U S A. 2019 Mar 26;116(13):6341-6350. doi: 10.1073/pnas.1820870116. Epub 2019 Mar 7.


Effects on intestinal cellular bioaccessibility of carotenoids and cellular biological activity as a consequence of co-ingestion of anthocyanin- and carotenoid-rich vegetables.

Phan MAT, Bucknall MP, Arcot J.

Food Chem. 2019 Jul 15;286:678-685. doi: 10.1016/j.foodchem.2019.02.046. Epub 2019 Feb 19.


Pessary Compared With Vaginal Progesterone for the Prevention of Preterm Birth in Women With Twin Pregnancies and Cervical Length Less Than 38 mm: A Randomized Controlled Trial.

Dang VQ, Nguyen LK, Pham TD, He YTN, Vu KN, Phan MTN, Le TQ, Le CH, Vuong LN, Mol BW.

Obstet Gynecol. 2019 Mar;133(3):459-467. doi: 10.1097/AOG.0000000000003136.


Reducing false positive rate of fetal monosomy X in non-invasive prenatal testing using a combined algorithm to detect maternal mosaic monosomy X.

Phan MD, Vo BT, Nguyen TV, Tran NT, Trinh HNT, Nguyen TTQ, Nguyen NH, Tran TT, Tran UV, Dao TTH, Pham AH, Tran TH, Truong KD, Hoang TTD, Do TT, Nguyen HN, Giang H.

Prenat Diagn. 2019 Mar;39(4):324-327. doi: 10.1002/pd.5430. Epub 2019 Feb 20. No abstract available.


Complete Genome Sequences of Dengue Virus Type 2 Strains from Kilifi, Kenya.

Kamau E, Agoti CN, Ngoi JM, de Laurent ZR, Gitonga J, Cotten M, Phan MVT, Nokes DJ, Delwart E, Sanders E, Warimwe GM.

Microbiol Resour Announc. 2019 Jan 24;8(4). pii: e01566-18. doi: 10.1128/MRA.01566-18. eCollection 2019 Jan.


Genomic sequence of yellow fever virus from a Dutch traveller returning from the Gambia-Senegal region, the Netherlands, November 2018.

Phan MV, Murad SD, van der Eijk AA, Metselaar HJ, Hartog H, Harinck F, GeurtsvanKessel CH, Molenkamp R, Cotten M, Koopmans MP.

Euro Surveill. 2019 Jan;24(4). doi: 10.2807/1560-7917.ES.2019.24.4.1800684.


The plasma peptides of ovarian cancer.

Dufresne J, Bowden P, Thavarajah T, Florentinus-Mefailoski A, Chen ZZ, Tucholska M, Norzin T, Ho MT, Phan M, Mohamed N, Ravandi A, Stanton E, Slutsky AS, Dos Santos CC, Romaschin A, Marshall JC, Addison C, Malone S, Heyland D, Scheltens P, Killestein J, Teunissen CE, Diamandis EP, Michael Siu KW, Marshall JG.

Clin Proteomics. 2018 Dec 21;15:41. doi: 10.1186/s12014-018-9215-z. eCollection 2018.


Identification and characterization of Coronaviridae genomes from Vietnamese bats and rats based on conserved protein domains.

Phan MVT, Ngo Tri T, Hong Anh P, Baker S, Kellam P, Cotten M.

Virus Evol. 2018 Dec 15;4(2):vey035. doi: 10.1093/ve/vey035. eCollection 2018 Jul.


Chemical Synergy between Ionophore PBT2 and Zinc Reverses Antibiotic Resistance.

Bohlmann L, De Oliveira DMP, El-Deeb IM, Brazel EB, Harbison-Price N, Ong CY, Rivera-Hernandez T, Ferguson SA, Cork AJ, Phan MD, Soderholm AT, Davies MR, Nimmo GR, Dougan G, Schembri MA, Cook GM, McEwan AG, von Itzstein M, McDevitt CA, Walker MJ.

mBio. 2018 Dec 11;9(6). pii: e02391-18. doi: 10.1128/mBio.02391-18.


The plasma peptidome.

Dufresne J, Bowden P, Thavarajah T, Florentinus-Mefailoski A, Chen ZZ, Tucholska M, Norzin T, Ho MT, Phan M, Mohamed N, Ravandi A, Stanton E, Slutsky AS, Dos Santos CC, Romaschin A, Marshall JC, Addison C, Malone S, Heyland D, Scheltens P, Killestein J, Teunissen C, Diamandis EP, Siu KWM, Marshall JG.

Clin Proteomics. 2018 Dec 1;15:39. doi: 10.1186/s12014-018-9211-3. eCollection 2018.


Acridone alkaloids from the rhizomes of Luvunga scandens (Roxb.) Buch. Ham.

Tran NMA, Do THT, Truong LH, Le DT, Phan MN, Pham NKT, Mai DT, Nguyen TP.

Nat Prod Res. 2019 Aug;33(15):2176-2181. doi: 10.1080/14786419.2018.1492577. Epub 2018 Nov 10.


Interferences of anthocyanins with the uptake of lycopene in Caco-2 cells, and their interactive effects on anti-oxidation and anti-inflammation in vitro and ex vivo.

Phan MAT, Bucknall MP, Arcot J.

Food Chem. 2019 Mar 15;276:402-409. doi: 10.1016/j.foodchem.2018.10.012. Epub 2018 Oct 9.


First evidence of association between past environmental exposure to dioxin and DNA methylation of CYP1A1 and IGF2 genes in present day Vietnamese population.

Giuliani C, Biggs D, Nguyen TT, Marasco E, De Fanti S, Garagnani P, Le Phan MT, Nguyen VN, Luiselli D, Romeo G.

Environ Pollut. 2018 Nov;242(Pt A):976-985. doi: 10.1016/j.envpol.2018.07.015. Epub 2018 Jul 17.


Detection of a heterozygous germline APC mutation in a three-generation family with familial adenomatous polyposis using targeted massive parallel sequencing in Vietnam.

Giang H, Nguyen VT, Nguyen SD, Nguyen HP, Vo BT, Nguyen TM, Nguyen NH, Truong KD, Do TT, Phan MD, Nguyen HN.

BMC Med Genet. 2018 Oct 19;19(1):188. doi: 10.1186/s12881-018-0701-y.


X-ray as Irradiation Alternative for K562 Feeder Cell Inactivation in Human Natural Killer Cell Expansion.

Kim GH, Dang HN, Phan MT, Kweon SH, Chun S, Cho D.

Anticancer Res. 2018 Oct;38(10):5767-5772. doi: 10.21873/anticanres.12915.


Influence of early-life nutritional stress on songbird memory formation.

Bell BA, Phan ML, Meillère A, Evans JK, Leitner S, Vicario DS, Buchanan KL.

Proc Biol Sci. 2018 Sep 26;285(1887). pii: 20181270. doi: 10.1098/rspb.2018.1270.

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