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Bioinformatic and Molecular Analysis of Inverse Autotransporters from Escherichia coli.

Goh KGK, Moriel DG, Hancock SJ, Phan MD, Schembri MA.

mSphere. 2019 Aug 28;4(4). pii: e00572-19. doi: 10.1128/mSphere.00572-19.


Unlocking the Potential of Magnetotactic Bacteria as Magnetic Hyperthermia Agents.

Gandia D, Gandarias L, Rodrigo I, Robles-García J, Das R, Garaio E, García JÁ, Phan MH, Srikanth H, Orue I, Alonso J, Muela A, Fdez-Gubieda ML.

Small. 2019 Aug 27:e1902626. doi: 10.1002/smll.201902626. [Epub ahead of print]


Characterization of Norovirus and Other Human Enteric Viruses in Sewage and Stool Samples Through Next-Generation Sequencing.

Strubbia S, Phan MVT, Schaeffer J, Koopmans M, Cotten M, Le Guyader FS.

Food Environ Virol. 2019 Aug 24. doi: 10.1007/s12560-019-09402-3. [Epub ahead of print]


CODE STROKE ALERT-Concept and Development of a Novel Open-Source Platform to Streamline Acute Stroke Management.

Seah HM, Burney M, Phan M, Shell D, Wu J, Zhou K, Brooks O, Coulton B, Maingard J, Tang J, Yazdabadi G, Tahayori B, Barras C, Kok HK, Chandra R, Thijs V, Brooks DM, Asadi H.

Front Neurol. 2019 Jul 31;10:725. doi: 10.3389/fneur.2019.00725. eCollection 2019.


Population dynamics of an Escherichia coli ST131 lineage during recurrent urinary tract infection.

Forde BM, Roberts LW, Phan MD, Peters KM, Fleming BA, Russell CW, Lenherr SM, Myers JB, Barker AP, Fisher MA, Chong TM, Yin WF, Chan KG, Schembri MA, Mulvey MA, Beatson SA.

Nat Commun. 2019 Aug 13;10(1):3643. doi: 10.1038/s41467-019-11571-5.


Mycobacterium tuberculosis requires glyoxylate shunt and reverse methylcitrate cycle for lactate and pyruvate metabolism.

Serafini A, Tan L, Horswell S, Howell S, Greenwood DJ, Hunt DM, Phan MD, Schembri M, Monteleone M, Montague CR, Britton W, Garza-Garcia A, Snijders AP, VanderVen B, Gutierrez MG, West NP, de Carvalho LPS.

Mol Microbiol. 2019 Aug 7. doi: 10.1111/mmi.14362. [Epub ahead of print]


Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant.

Agoti CN, Phan MVT, Munywoki PK, Githinji G, Medley GF, Cane PA, Kellam P, Cotten M, Nokes DJ.

Sci Rep. 2019 Jul 11;9(1):10076. doi: 10.1038/s41598-019-46509-w.


Metabolomic Insights into the Effects of Breast Milk Versus Formula Milk Feeding in Infants.

Phan M, Momin SR, Senn MK, Wood AC.

Curr Nutr Rep. 2019 Sep;8(3):295-306. doi: 10.1007/s13668-019-00284-2. Review.


2H/1H variation in microbial lipids is controlled by NADPH metabolism.

Wijker RS, Sessions AL, Fuhrer T, Phan M.

Proc Natl Acad Sci U S A. 2019 Jun 18;116(25):12173-12182. doi: 10.1073/pnas.1818372116. Epub 2019 May 31.


Expansion of Human NK Cells Using K562 Cells Expressing OX40 Ligand and Short Exposure to IL-21.

Kweon S, Phan MT, Chun S, Yu H, Kim J, Kim S, Lee J, Ali AK, Lee SH, Kim SK, Doh J, Cho D.

Front Immunol. 2019 Apr 24;10:879. doi: 10.3389/fimmu.2019.00879. eCollection 2019.


Unique structural features of a bacterial autotransporter adhesin suggest mechanisms for interaction with host macromolecules.

Paxman JJ, Lo AW, Sullivan MJ, Panjikar S, Kuiper M, Whitten AE, Wang G, Luan CH, Moriel DG, Tan L, Peters KM, Phan MD, Gee CL, Ulett GC, Schembri MA, Heras B.

Nat Commun. 2019 Apr 29;10(1):1967. doi: 10.1038/s41467-019-09814-6.


The Utility of Data Transformation for Alignment, De Novo Assembly and Classification of Short Read Virus Sequences.

Tapinos A, Constantinides B, Phan MVT, Kouchaki S, Cotten M, Robertson DL.

Viruses. 2019 Apr 26;11(5). pii: E394. doi: 10.3390/v11050394.


Complete Genome Characterization of Eight Human Parainfluenza Viruses from the Netherlands.

Phan MVT, Arron G, GeurtsvanKessel CH, Huisman RC, Molenkamp R, Koopmans MPG, Cotten M.

Microbiol Resour Announc. 2019 Apr 11;8(15). pii: e00125-19. doi: 10.1128/MRA.00125-19.


Variation in hemolysin A expression between uropathogenic Escherichia coli isolates determines NLRP3-dependent vs. -independent macrophage cell death and host colonization.

Murthy AMV, Sullivan MJ, Nhu NTK, Lo AW, Phan MD, Peters KM, Boucher D, Schroder K, Beatson SA, Ulett GC, Schembri MA, Sweet MJ.

FASEB J. 2019 Jun;33(6):7437-7450. doi: 10.1096/fj.201802100R. Epub 2019 Mar 14.


Uropathogenic Escherichia coli employs both evasion and resistance to subvert innate immune-mediated zinc toxicity for dissemination.

Stocks CJ, Phan MD, Achard MES, Nhu NTK, Condon ND, Gawthorne JA, Lo AW, Peters KM, McEwan AG, Kapetanovic R, Schembri MA, Sweet MJ.

Proc Natl Acad Sci U S A. 2019 Mar 26;116(13):6341-6350. doi: 10.1073/pnas.1820870116. Epub 2019 Mar 7.


Effects on intestinal cellular bioaccessibility of carotenoids and cellular biological activity as a consequence of co-ingestion of anthocyanin- and carotenoid-rich vegetables.

Phan MAT, Bucknall MP, Arcot J.

Food Chem. 2019 Jul 15;286:678-685. doi: 10.1016/j.foodchem.2019.02.046. Epub 2019 Feb 19.


Pessary Compared With Vaginal Progesterone for the Prevention of Preterm Birth in Women With Twin Pregnancies and Cervical Length Less Than 38 mm: A Randomized Controlled Trial.

Dang VQ, Nguyen LK, Pham TD, He YTN, Vu KN, Phan MTN, Le TQ, Le CH, Vuong LN, Mol BW.

Obstet Gynecol. 2019 Mar;133(3):459-467. doi: 10.1097/AOG.0000000000003136.


Reducing false positive rate of fetal monosomy X in non-invasive prenatal testing using a combined algorithm to detect maternal mosaic monosomy X.

Phan MD, Vo BT, Nguyen TV, Tran NT, Trinh HNT, Nguyen TTQ, Nguyen NH, Tran TT, Tran UV, Dao TTH, Pham AH, Tran TH, Truong KD, Hoang TTD, Do TT, Nguyen HN, Giang H.

Prenat Diagn. 2019 Mar;39(4):324-327. doi: 10.1002/pd.5430. Epub 2019 Feb 20. No abstract available.


Complete Genome Sequences of Dengue Virus Type 2 Strains from Kilifi, Kenya.

Kamau E, Agoti CN, Ngoi JM, de Laurent ZR, Gitonga J, Cotten M, Phan MVT, Nokes DJ, Delwart E, Sanders E, Warimwe GM.

Microbiol Resour Announc. 2019 Jan 24;8(4). pii: e01566-18. doi: 10.1128/MRA.01566-18. eCollection 2019 Jan.


Genomic sequence of yellow fever virus from a Dutch traveller returning from the Gambia-Senegal region, the Netherlands, November 2018.

Phan MV, Murad SD, van der Eijk AA, Metselaar HJ, Hartog H, Harinck F, GeurtsvanKessel CH, Molenkamp R, Cotten M, Koopmans MP.

Euro Surveill. 2019 Jan;24(4). doi: 10.2807/1560-7917.ES.2019.24.4.1800684.


The plasma peptides of ovarian cancer.

Dufresne J, Bowden P, Thavarajah T, Florentinus-Mefailoski A, Chen ZZ, Tucholska M, Norzin T, Ho MT, Phan M, Mohamed N, Ravandi A, Stanton E, Slutsky AS, Dos Santos CC, Romaschin A, Marshall JC, Addison C, Malone S, Heyland D, Scheltens P, Killestein J, Teunissen CE, Diamandis EP, Michael Siu KW, Marshall JG.

Clin Proteomics. 2018 Dec 21;15:41. doi: 10.1186/s12014-018-9215-z. eCollection 2018.


Identification and characterization of Coronaviridae genomes from Vietnamese bats and rats based on conserved protein domains.

Phan MVT, Ngo Tri T, Hong Anh P, Baker S, Kellam P, Cotten M.

Virus Evol. 2018 Dec 15;4(2):vey035. doi: 10.1093/ve/vey035. eCollection 2018 Jul.


Chemical Synergy between Ionophore PBT2 and Zinc Reverses Antibiotic Resistance.

Bohlmann L, De Oliveira DMP, El-Deeb IM, Brazel EB, Harbison-Price N, Ong CY, Rivera-Hernandez T, Ferguson SA, Cork AJ, Phan MD, Soderholm AT, Davies MR, Nimmo GR, Dougan G, Schembri MA, Cook GM, McEwan AG, von Itzstein M, McDevitt CA, Walker MJ.

MBio. 2018 Dec 11;9(6). pii: e02391-18. doi: 10.1128/mBio.02391-18.


The plasma peptidome.

Dufresne J, Bowden P, Thavarajah T, Florentinus-Mefailoski A, Chen ZZ, Tucholska M, Norzin T, Ho MT, Phan M, Mohamed N, Ravandi A, Stanton E, Slutsky AS, Dos Santos CC, Romaschin A, Marshall JC, Addison C, Malone S, Heyland D, Scheltens P, Killestein J, Teunissen C, Diamandis EP, Siu KWM, Marshall JG.

Clin Proteomics. 2018 Dec 1;15:39. doi: 10.1186/s12014-018-9211-3. eCollection 2018.


Acridone alkaloids from the rhizomes of Luvunga scandens (Roxb.) Buch. Ham.

Tran NMA, Do THT, Truong LH, Le DT, Phan MN, Pham NKT, Mai DT, Nguyen TP.

Nat Prod Res. 2019 Aug;33(15):2176-2181. doi: 10.1080/14786419.2018.1492577. Epub 2018 Nov 10.


Interferences of anthocyanins with the uptake of lycopene in Caco-2 cells, and their interactive effects on anti-oxidation and anti-inflammation in vitro and ex vivo.

Phan MAT, Bucknall MP, Arcot J.

Food Chem. 2019 Mar 15;276:402-409. doi: 10.1016/j.foodchem.2018.10.012. Epub 2018 Oct 9.


First evidence of association between past environmental exposure to dioxin and DNA methylation of CYP1A1 and IGF2 genes in present day Vietnamese population.

Giuliani C, Biggs D, Nguyen TT, Marasco E, De Fanti S, Garagnani P, Le Phan MT, Nguyen VN, Luiselli D, Romeo G.

Environ Pollut. 2018 Nov;242(Pt A):976-985. doi: 10.1016/j.envpol.2018.07.015. Epub 2018 Jul 17.


Detection of a heterozygous germline APC mutation in a three-generation family with familial adenomatous polyposis using targeted massive parallel sequencing in Vietnam.

Giang H, Nguyen VT, Nguyen SD, Nguyen HP, Vo BT, Nguyen TM, Nguyen NH, Truong KD, Do TT, Phan MD, Nguyen HN.

BMC Med Genet. 2018 Oct 19;19(1):188. doi: 10.1186/s12881-018-0701-y.


X-ray as Irradiation Alternative for K562 Feeder Cell Inactivation in Human Natural Killer Cell Expansion.

Kim GH, Dang HN, Phan MT, Kweon SH, Chun S, Cho D.

Anticancer Res. 2018 Oct;38(10):5767-5772. doi: 10.21873/anticanres.12915.


Influence of early-life nutritional stress on songbird memory formation.

Bell BA, Phan ML, Meillère A, Evans JK, Leitner S, Vicario DS, Buchanan KL.

Proc Biol Sci. 2018 Sep 26;285(1887). pii: 20181270. doi: 10.1098/rspb.2018.1270.


Observations of Toddlers' sensory-based exploratory behaviors with a novel food.

Momin SR, Hughes SO, Elias C, Papaioannou MA, Phan M, Vides D, Wood AC.

Appetite. 2018 Dec 1;131:108-116. doi: 10.1016/j.appet.2018.08.035. Epub 2018 Aug 29.


Systematic evaluation of isoform function in literature reports of alternative splicing.

Bhuiyan SA, Ly S, Phan M, Huntington B, Hogan E, Liu CC, Liu J, Pavlidis P.

BMC Genomics. 2018 Aug 28;19(1):637. doi: 10.1186/s12864-018-5013-2.


Oncolytic Viruses on Drugs: Achieving Higher Therapeutic Efficacy.

Phan M, Watson MF, Alain T, Diallo JS.

ACS Infect Dis. 2018 Oct 12;4(10):1448-1467. doi: 10.1021/acsinfecdis.8b00144. Epub 2018 Sep 12.


Discovery of New Genes Involved in Curli Production by a Uropathogenic Escherichia coli Strain from the Highly Virulent O45:K1:H7 Lineage.

Nhu NTK, Phan MD, Peters KM, Lo AW, Forde BM, Min Chong T, Yin WF, Chan KG, Chromek M, Brauner A, Chapman MR, Beatson SA, Schembri MA.

MBio. 2018 Aug 21;9(4). pii: e01462-18. doi: 10.1128/mBio.01462-18.


The urinary microbiome in patients with refractory urge incontinence and recurrent urinary tract infection.

Chen Z, Phan MD, Bates LJ, Peters KM, Mukerjee C, Moore KH, Schembri MA.

Int Urogynecol J. 2018 Dec;29(12):1775-1782. doi: 10.1007/s00192-018-3679-2. Epub 2018 Jun 26.


A "Smart" Way of Addressing Food Insecurity in the Digital Age.

Phan M, Hickey E, Beck AF, Klein MD, Real FJ.

Pediatrics. 2018 Jul;142(1). pii: e20181336. doi: 10.1542/peds.2018-1336. Epub 2018 Jun 15. Review. No abstract available.


Establishing and validating noninvasive prenatal testing procedure for fetal aneuploidies in Vietnam.

Phan MD, Nguyen TV, Trinh HNT, Vo BT, Nguyen TM, Nguyen NH, Nguyen TTQ, Do TTT, Hoang TTD, Truong KD, Giang H, Nguyen HN.

J Matern Fetal Neonatal Med. 2019 Dec;32(23):4009-4015. doi: 10.1080/14767058.2018.1481032. Epub 2018 Jul 10.


The first case of congenital blood chimerism in two of the triplets in Korea.

Chung YN, Chun S, Phan MT, Nam MH, Choi BM, Cho D, Choi JS.

J Clin Lab Anal. 2018 Oct;32(8):e22580. doi: 10.1002/jcla.22580. Epub 2018 May 24.


Regulation of hemolysin in uropathogenic Escherichia coli fine-tunes killing of human macrophages.

M V Murthy A, Phan MD, Peters KM, Nhu NTK, Welch RA, Ulett GC, Schembri MA, Sweet MJ.

Virulence. 2018 Dec 31;9(1):967-980. doi: 10.1080/21505594.2018.1465786.


Complete Genome Sequences of Six Measles Virus Strains.

Phan MVT, Schapendonk CME, Oude Munnink BB, Koopmans MPG, de Swart RL, Cotten M.

Genome Announc. 2018 Mar 29;6(13). pii: e00184-18. doi: 10.1128/genomeA.00184-18.


The evolution of floral signals in relation to range overlap in a clade of California Jewelflowers (Streptanthus s.l.).

Weber MG, Cacho NI, Phan MJQ, Disbrow C, Ramírez SR, Strauss SY.

Evolution. 2018 Apr;72(4):798-807. doi: 10.1111/evo.13456. Epub 2018 Mar 30.


Strong room-temperature ferromagnetism in VSe2 monolayers on van der Waals substrates.

Bonilla M, Kolekar S, Ma Y, Diaz HC, Kalappattil V, Das R, Eggers T, Gutierrez HR, Phan MH, Batzill M.

Nat Nanotechnol. 2018 Apr;13(4):289-293. doi: 10.1038/s41565-018-0063-9. Epub 2018 Feb 19.


Copper Ions and Coordination Complexes as Novel Carbapenem Adjuvants.

Djoko KY, Achard MES, Phan MD, Lo AW, Miraula M, Prombhul S, Hancock SJ, Peters KM, Sidjabat HE, Harris PN, Mitić N, Walsh TR, Anderson GJ, Shafer WM, Paterson DL, Schenk G, McEwan AG, Schembri MA.

Antimicrob Agents Chemother. 2018 Jan 25;62(2). pii: e02280-17. doi: 10.1128/AAC.02280-17. Print 2018 Feb.


Modifications in the pmrB gene are the primary mechanism for the development of chromosomally encoded resistance to polymyxins in uropathogenic Escherichia coli.

Phan MD, Nhu NTK, Achard MES, Forde BM, Hong KW, Chong TM, Yin WF, Chan KG, West NP, Walker MJ, Paterson DL, Beatson SA, Schembri MA.

J Antimicrob Chemother. 2017 Oct 1;72(10):2729-2736. doi: 10.1093/jac/dkx204.


Genome-Wide Discovery of Genes Required for Capsule Production by Uropathogenic Escherichia coli.

Goh KGK, Phan MD, Forde BM, Chong TM, Yin WF, Chan KG, Ulett GC, Sweet MJ, Beatson SA, Schembri MA.

MBio. 2017 Oct 24;8(5). pii: e01558-17. doi: 10.1128/mBio.01558-17.


Congenital pulmonary airway malformations: state-of-the-art review for pediatrician's use.

Leblanc C, Baron M, Desselas E, Phan MH, Rybak A, Thouvenin G, Lauby C, Irtan S.

Eur J Pediatr. 2017 Dec;176(12):1559-1571. doi: 10.1007/s00431-017-3032-7. Epub 2017 Oct 19. Review.


Roles of bulk and surface magnetic anisotropy on the longitudinal spin Seebeck effect of Pt/YIG.

Kalappattil V, Das R, Phan MH, Srikanth H.

Sci Rep. 2017 Oct 17;7(1):13316. doi: 10.1038/s41598-017-13689-2.


Whole-Genome Next-Generation Sequencing to Study Within-Host Evolution of Norovirus (NoV) Among Immunocompromised Patients With Chronic NoV Infection.

van Beek J, de Graaf M, Smits S, Schapendonk CME, Verjans GMGM, Vennema H, van der Eijk AA, Phan MVT, Cotten M, Koopmans M.

J Infect Dis. 2017 Dec 19;216(12):1513-1524. doi: 10.1093/infdis/jix520.


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