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Items: 1 to 50 of 56

1.

Cdh2 coordinates Myosin-II dependent internalisation of the zebrafish neural plate.

Araya C, Häkkinen HM, Carcamo L, Cerda M, Savy T, Rookyard C, Peyriéras N, Clarke JDW.

Sci Rep. 2019 Feb 12;9(1):1835. doi: 10.1038/s41598-018-38455-w.

2.

Brownian-like deviation of neighboring cells in the early embryogenesis of the zebrafish.

Diaz Simões JR, Grebenkov D, Bourgine P, Peyriéras N.

Phys Biol. 2019 Feb 8;16(2):024001. doi: 10.1088/1478-3975/aaf92d.

PMID:
30560807
3.

Control of the proportion of inner cells by asymmetric divisions and the ensuing resilience of cloned rabbit embryos.

Fabrèges D, Daniel N, Duranthon V, Peyriéras N.

Development. 2018 Apr 18;145(8). pii: dev152041. doi: 10.1242/dev.152041.

4.

Fluorescent Polymer Nanoparticles for Cell Barcoding In Vitro and In Vivo.

Andreiuk B, Reisch A, Lindecker M, Follain G, Peyriéras N, Goetz JG, Klymchenko AS.

Small. 2017 Oct;13(38). doi: 10.1002/smll.201701582. Epub 2017 Aug 9.

PMID:
28791769
5.

A cell-based computational model of early embryogenesis coupling mechanical behaviour and gene regulation.

Delile J, Herrmann M, Peyriéras N, Doursat R.

Nat Commun. 2017 Jan 23;8:13929. doi: 10.1038/ncomms13929.

6.

Distribution of neurosensory progenitor pools during inner ear morphogenesis unveiled by cell lineage reconstruction.

Dyballa S, Savy T, Germann P, Mikula K, Remesikova M, Špir R, Zecca A, Peyriéras N, Pujades C.

Elife. 2017 Jan 4;6. pii: e22268. doi: 10.7554/eLife.22268.

7.

Fluorescent Protein-photoprotein Fusions and Their Applications in Calcium Imaging.

Bakayan A, Domingo B, Vaquero CF, Peyriéras N, Llopis J.

Photochem Photobiol. 2017 Mar;93(2):448-465. doi: 10.1111/php.12682. Epub 2017 Jan 25. Review.

PMID:
27925224
8.

An integrated modelling framework from cells to organism based on a cohort of digital embryos.

Villoutreix P, Delile J, Rizzi B, Duloquin L, Savy T, Bourgine P, Doursat R, Peyriéras N.

Sci Rep. 2016 Dec 2;6:37438. doi: 10.1038/srep37438.

9.

Repulsive cues combined with physical barriers and cell-cell adhesion determine progenitor cell positioning during organogenesis.

Paksa A, Bandemer J, Hoeckendorf B, Razin N, Tarbashevich K, Minina S, Meyen D, Biundo A, Leidel SA, Peyrieras N, Gov NS, Keller PJ, Raz E.

Nat Commun. 2016 Apr 18;7:11288. doi: 10.1038/ncomms11288.

10.

A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage.

Faure E, Savy T, Rizzi B, Melani C, Stašová O, Fabrèges D, Špir R, Hammons M, Čúnderlík R, Recher G, Lombardot B, Duloquin L, Colin I, Kollár J, Desnoulez S, Affaticati P, Maury B, Boyreau A, Nief JY, Calvat P, Vernier P, Frain M, Lutfalla G, Kergosien Y, Suret P, Remešíková M, Doursat R, Sarti A, Mikula K, Peyriéras N, Bourgine P.

Nat Commun. 2016 Feb 25;7:8674. doi: 10.1038/ncomms9674.

11.

Identification of the optic recess region as a morphogenetic entity in the zebrafish forebrain.

Affaticati P, Yamamoto K, Rizzi B, Bureau C, Peyriéras N, Pasqualini C, Demarque M, Vernier P.

Sci Rep. 2015 Mar 4;5:8738. doi: 10.1038/srep08738.

12.

Biocompatible photoresistant far-red emitting, fluorescent polymer probes, with near-infrared two-photon absorption, for living cell and zebrafish embryo imaging.

Adjili S, Favier A, Fargier G, Thomas A, Massin J, Monier K, Favard C, Vanbelle C, Bruneau S, Peyriéras N, Andraud C, Muriaux D, Charreyre MT.

Biomaterials. 2015 Apr;46:70-81. doi: 10.1016/j.biomaterials.2014.12.026. Epub 2015 Jan 17.

PMID:
25678117
13.

Expression of fluorescent proteins in Branchiostoma lanceolatum by mRNA injection into unfertilized oocytes.

Hirsinger E, Carvalho JE, Chevalier C, Lutfalla G, Nicolas JF, Peyriéras N, Schubert M.

J Vis Exp. 2015 Jan 12;(95):52042. doi: 10.3791/52042.

14.

A digital framework to build, visualize and analyze a gene expression atlas with cellular resolution in zebrafish early embryogenesis.

Castro-González C, Luengo-Oroz MA, Duloquin L, Savy T, Rizzi B, Desnoulez S, Doursat R, Kergosien YL, Ledesma-Carbayo MJ, Bourgine P, Peyriéras N, Santos A.

PLoS Comput Biol. 2014 Jun 19;10(6):e1003670. doi: 10.1371/journal.pcbi.1003670. eCollection 2014 Jun.

15.

The Bcl-2 homolog Nrz inhibits binding of IP3 to its receptor to control calcium signaling during zebrafish epiboly.

Bonneau B, Nougarède A, Prudent J, Popgeorgiev N, Peyriéras N, Rimokh R, Gillet G.

Sci Signal. 2014 Feb 11;7(312):ra14. doi: 10.1126/scisignal.2004480.

PMID:
24518293
16.

Towards 3D in silico modeling of the sea urchin embryonic development.

Rizzi B, Peyrieras N.

J Chem Biol. 2013 Sep 13;7(1):17-28. doi: 10.1007/s12154-013-0101-x. Review.

17.

Zebrafish midbrain slow-amplifying progenitors exhibit high levels of transcripts for nucleotide and ribosome biogenesis.

Recher G, Jouralet J, Brombin A, Heuzé A, Mugniery E, Hermel JM, Desnoulez S, Savy T, Herbomel P, Bourrat F, Peyriéras N, Jamen F, Joly JS.

Development. 2013 Dec;140(24):4860-9. doi: 10.1242/dev.099010. Epub 2013 Nov 6.

18.

Inhibitory signalling to the Arp2/3 complex steers cell migration.

Dang I, Gorelik R, Sousa-Blin C, Derivery E, Guérin C, Linkner J, Nemethova M, Dumortier JG, Giger FA, Chipysheva TA, Ermilova VD, Vacher S, Campanacci V, Herrada I, Planson AG, Fetics S, Henriot V, David V, Oguievetskaia K, Lakisic G, Pierre F, Steffen A, Boyreau A, Peyriéras N, Rottner K, Zinn-Justin S, Cherfils J, Bièche I, Alexandrova AY, David NB, Small JV, Faix J, Blanchoin L, Gautreau A.

Nature. 2013 Nov 14;503(7475):281-4. doi: 10.1038/nature12611. Epub 2013 Oct 16.

PMID:
24132237
19.

Automated processing of zebrafish imaging data: a survey.

Mikut R, Dickmeis T, Driever W, Geurts P, Hamprecht FA, Kausler BX, Ledesma-Carbayo MJ, Marée R, Mikula K, Pantazis P, Ronneberger O, Santos A, Stotzka R, Strähle U, Peyriéras N.

Zebrafish. 2013 Sep;10(3):401-21. doi: 10.1089/zeb.2013.0886. Epub 2013 Jun 12. Review.

20.

Assembling models of embryo development: image analysis and the construction of digital atlases.

Castro-González C, Ledesma-Carbayo MJ, Peyriéras N, Santos A.

Birth Defects Res C Embryo Today. 2012 Jun;96(2):109-20. doi: 10.1002/bdrc.21012. Review. Erratum in: Birth Defects Res C Embryo Today. 2012 Sep;96(3):271.

PMID:
22692885
21.

3D+t morphological processing: applications to embryogenesis image analysis.

Luengo-Oroz MA, Pastor-Escuredo D, Castro-Gonzalez C, Faure E, Savy T, Lombardot B, Rubio-Guivernau JL, Duloquin L, Ledesma-Carbayo MJ, Bourgine P, Peyrieras N, Santos A.

IEEE Trans Image Process. 2012 Aug;21(8):3518-30. doi: 10.1109/TIP.2012.2197007. Epub 2012 May 1.

PMID:
22562755
22.

Image processing challenges in the creation of spatiotemporal gene expression atlases of developing embryos.

Castro C, Luengo-Oroz MÁ, Douloquin L, Savy T, Melani C, Desnoulez S, Bourgine P, Peyriéras N, Ledesma-Carbayo MJ, Santos A.

Conf Proc IEEE Eng Med Biol Soc. 2011;2011:6841-4. doi: 10.1109/IEMBS.2011.6091687.

PMID:
22255910
23.

Methodology for reconstructing early zebrafish development from in vivo multiphoton microscopy.

Luengo-Oroz MA, Rubio-Guivernau JL, Faure E, Savy T, Duloquin L, Olivier N, Pastor D, Ledesma-Carbayo M, Débarre D, Bourgine P, Beaurepaire E, Peyriéras N, Santos A.

IEEE Trans Image Process. 2012 Apr;21(4):2335-40. doi: 10.1109/TIP.2011.2177911. Epub 2011 Dec 1.

PMID:
22155959
24.

Wavelet-based image fusion in multi-view three-dimensional microscopy.

Rubio-Guivernau JL, Gurchenkov V, Luengo-Oroz MA, Duloquin L, Bourgine P, Santos A, Peyrieras N, Ledesma-Carbayo MJ.

Bioinformatics. 2012 Jan 15;28(2):238-45. doi: 10.1093/bioinformatics/btr609. Epub 2011 Nov 9.

PMID:
22072386
25.

Combined third-harmonic generation and four-wave mixing microscopy of tissues and embryos.

Mahou P, Olivier N, Labroille G, Duloquin L, Sintes JM, Peyriéras N, Legouis R, Débarre D, Beaurepaire E.

Biomed Opt Express. 2011 Oct 1;2(10):2837-49. doi: 10.1364/BOE.2.002837. Epub 2011 Sep 26.

26.

Image analysis for understanding embryo development: a bridge from microscopy to biological insights.

Luengo-Oroz MA, Ledesma-Carbayo MJ, Peyriéras N, Santos A.

Curr Opin Genet Dev. 2011 Oct;21(5):630-7. doi: 10.1016/j.gde.2011.08.001. Epub 2011 Sep 3. Review.

PMID:
21893410
27.

Comparison of distribution and activity of nanoparticles with short interfering DNA (Dbait) in various living systems.

Berthault N, Maury B, Agrario C, Herbette A, Sun JS, Peyrieras N, Dutreix M.

Cancer Gene Ther. 2011 Oct;18(10):695-706. doi: 10.1038/cgt.2011.39. Epub 2011 Jul 29.

28.

Segmentation of 3D cell membrane images by PDE methods and its applications.

Mikula K, Peyriéras N, Remešíková M, Stašová O.

Comput Biol Med. 2011 Jun;41(6):326-39. doi: 10.1016/j.compbiomed.2011.03.010. Epub 2011 Apr 15.

PMID:
21497333
29.

Amphioxus spawning behavior in an artificial seawater facility.

Theodosiou M, Colin A, Schulz J, Laudet V, Peyrieras N, Nicolas JF, Schubert M, Hirsinger E.

J Exp Zool B Mol Dev Evol. 2011 Jun 15;316(4):263-75. doi: 10.1002/jez.b.21397. Epub 2011 Jan 26.

PMID:
21271675
30.

Towards a digital model of zebrafish embryogenesis. Integration of cell tracking and gene expression quantification.

Castro-Gonzalez C, Luengo-Oroz MA, Douloquin L, Savy T, Melani C, Desnoulez S, Ledesma-Carbayo MJ, Bourginey P, Peyrieras N, Santos A.

Conf Proc IEEE Eng Med Biol Soc. 2010;2010:5520-3. doi: 10.1109/IEMBS.2010.5626769.

PMID:
21096468
31.

Cell lineage reconstruction of early zebrafish embryos using label-free nonlinear microscopy.

Olivier N, Luengo-Oroz MA, Duloquin L, Faure E, Savy T, Veilleux I, Solinas X, Débarre D, Bourgine P, Santos A, Peyriéras N, Beaurepaire E.

Science. 2010 Aug 20;329(5994):967-71. doi: 10.1126/science.1189428.

32.

3D early embryogenesis image filtering by nonlinear partial differential equations.

Krivá Z, Mikula K, Peyriéras N, Rizzi B, Sarti A, Stasová O.

Med Image Anal. 2010 Aug;14(4):510-26. doi: 10.1016/j.media.2010.03.003. Epub 2010 Apr 10.

PMID:
20457535
33.

Combining sea urchin embryo cell lineages by error-tolerant graph matching.

Rubio-Guivernau JL, Luengo-Oroz MA, Duloquin L, Savy T, Peyrieras N, Bourgine P, Santos A.

Conf Proc IEEE Eng Med Biol Soc. 2009;2009:5918-21. doi: 10.1109/IEMBS.2009.5334851.

PMID:
19965057
34.

Cell tracking in fluorescence images of embryogenesis processes with morphological reconstruction by 4D-tubular structuring elements.

Pastor D, Luengo-Oroz MA, Lombardot B, Gonzalvez I, Duloquin L, Savy T, Bourgine P, Peyrieras N, Santos A.

Conf Proc IEEE Eng Med Biol Soc. 2009;2009:970-3. doi: 10.1109/IEMBS.2009.5333756.

PMID:
19964254
35.

An automatic quantification and registration strategy to create a gene expression atlas of zebrafish embryogenesis.

Castro C, Luengo-Oroz MA, Desnoulez S, Duloquin L, Fernandez-de-Manuel L, Montagna S, Ledesma-Carbayo MJ, Bourgine P, Peyrieras N, Santos A.

Conf Proc IEEE Eng Med Biol Soc. 2009;2009:1469-72. doi: 10.1109/IEMBS.2009.5332436.

PMID:
19963501
36.

Cells segmentation from 3-D confocal images of early zebrafish embryogenesis.

Zanella C, Campana M, Rizzi B, Melani C, Sanguinetti G, Bourgine P, Mikula K, Peyrieras N, Sarti A.

IEEE Trans Image Process. 2010 Mar;19(3):770-81. doi: 10.1109/TIP.2009.2033629. Epub 2009 Oct 6.

PMID:
19955038
37.

Methods toward in vivo measurement of zebrafish epithelial and deep cell proliferation.

Campana M, Maury B, Dutreix M, Peyriéras N, Sarti A.

Comput Methods Programs Biomed. 2010 May;98(2):103-17. doi: 10.1016/j.cmpb.2009.08.008. Epub 2009 Sep 24.

PMID:
19781805
38.

3-D zebrafish embryo image filtering by nonlinear partial differential equations.

Rizzi B, Campana M, Zanella C, Melani C, Cunderlik R, Krivá Z, Bourgine P, Mikula K, Peyriéras N, Sarti A.

Conf Proc IEEE Eng Med Biol Soc. 2007;2007:6252-5.

PMID:
18003450
39.

Segmentation of cells from 3-D confocal images of live zebrafish embryo.

Zanella C, Rizzi B, Melani C, Campana M, Bourgine P, Mikula K, Peyriéras N, Sarti A.

Conf Proc IEEE Eng Med Biol Soc. 2007;2007:6028-31.

PMID:
18003388
40.

Cells tracking in a live zebrafish embryo.

Melani C, Campana M, Lombardot B, Rizzi B, Veronesi F, Zanella C, Bourgine P, Mikula K, Peyriéras N, Sarti A.

Conf Proc IEEE Eng Med Biol Soc. 2007;2007:1631-4.

PMID:
18002285
41.

Identification of the zebrafish IFN receptor: implications for the origin of the vertebrate IFN system.

Levraud JP, Boudinot P, Colin I, Benmansour A, Peyrieras N, Herbomel P, Lutfalla G.

J Immunol. 2007 Apr 1;178(7):4385-94.

42.

Mechano-sensory organ regeneration in adults: the zebrafish lateral line as a model.

Dufourcq P, Roussigné M, Blader P, Rosa F, Peyrieras N, Vriz S.

Mol Cell Neurosci. 2006 Oct;33(2):180-7. Epub 2006 Sep 1.

PMID:
16949838
43.

Nodal and Fgf pathways interact through a positive regulatory loop and synergize to maintain mesodermal cell populations.

Mathieu J, Griffin K, Herbomel P, Dickmeis T, Strähle U, Kimelman D, Rosa FM, Peyriéras N.

Development. 2004 Feb;131(3):629-41. Epub 2004 Jan 7.

44.

Maternal induction of ventral fate by zebrafish radar.

Sidi S, Goutel C, Peyriéras N, Rosa FM.

Proc Natl Acad Sci U S A. 2003 Mar 18;100(6):3315-20. Epub 2003 Feb 24.

45.

Distinct and cooperative roles for Nodal and Hedgehog signals during hypothalamic development.

Mathieu J, Barth A, Rosa FM, Wilson SW, Peyriéras N.

Development. 2002 Jul;129(13):3055-65.

46.

Regulation of nodal signalling and mesendoderm formation by TARAM-A, a TGFbeta-related type I receptor.

Aoki TO, Mathieu J, Saint-Etienne L, Rebagliati MR, Peyriéras N, Rosa FM.

Dev Biol. 2002 Jan 15;241(2):273-88.

47.

Cooperative action of ADMP- and BMP-mediated pathways in regulating cell fates in the zebrafish gastrula.

Willot V, Mathieu J, Lu Y, Schmid B, Sidi S, Yan YL, Postlethwait JH, Mullins M, Rosa F, Peyriéras N.

Dev Biol. 2002 Jan 1;241(1):59-78.

48.

Conversion of zebrafish blastomeres to an endodermal fate by TGF-beta-related signaling.

Peyriéras N, Strähle U, Rosa F.

Curr Biol. 1998 Jun 18;8(13):783-6.

49.

Inhibitory interactions controlling organizer activity in fish.

Peyriéras N, Lu Y, Renucci A, Lemarchandel V, Rosa F.

C R Acad Sci III. 1996 Dec;319(12):1107-12.

PMID:
9091181
50.

Instability at the W/c-kit locus in mice: analysis of melanocyte cell lines derived from reversion spots.

De Sepulveda P, Peyrieras N, Panthier JJ.

Oncogene. 1994 Sep;9(9):2655-61.

PMID:
7520149

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