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Items: 35

1.

Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee.

Adriaenssens EM, Wittmann J, Kuhn JH, Turner D, Sullivan MB, Dutilh BE, Jang HB, van Zyl LJ, Klumpp J, Lobocka M, Moreno Switt AI, Rumnieks J, Edwards RA, Uchiyama J, Alfenas-Zerbini P, Petty NK, Kropinski AM, Barylski J, Gillis A, Clokie MRC, Prangishvili D, Lavigne R, Aziz RK, Duffy S, Krupovic M, Poranen MM, Knezevic P, Enault F, Tong Y, Oksanen HM, Rodney Brister J.

Arch Virol. 2018 Apr;163(4):1125-1129. doi: 10.1007/s00705-018-3723-z. Epub 2018 Jan 22. No abstract available.

PMID:
29356990
2.

Visualization of Phage Genomic Data: Comparative Genomics and Publication-Quality Diagrams.

Turner D, Sutton JM, Reynolds DM, Sim EM, Petty NK.

Methods Mol Biol. 2018;1681:239-260. doi: 10.1007/978-1-4939-7343-9_18.

PMID:
29134600
3.

Essential Steps in Characterizing Bacteriophages: Biology, Taxonomy, and Genome Analysis.

Aziz RK, Ackermann HW, Petty NK, Kropinski AM.

Methods Mol Biol. 2018;1681:197-215. doi: 10.1007/978-1-4939-7343-9_15.

PMID:
29134597
4.

Genomic Epidemiology of NDM-1-Encoding Plasmids in Latin American Clinical Isolates Reveals Insights into the Evolution of Multidrug Resistance.

Marquez-Ortiz RA, Haggerty L, Olarte N, Duarte C, Garza-Ramos U, Silva-Sanchez J, Castro BE, Sim EM, Beltran M, Moncada MV, Valderrama A, Castellanos JE, Charles IG, Vanegas N, Escobar-Perez J, Petty NK.

Genome Biol Evol. 2017 Jun 1;9(6):1725-1741. doi: 10.1093/gbe/evx115.

5.

First Complete Providencia rettgeri Genome Sequence, the NDM-1-Producing Clinical Strain RB151.

Marquez-Ortiz RA, Haggerty L, Sim EM, Duarte C, Castro-Cardozo BE, Beltran M, Saavedra S, Vanegas N, Escobar-Perez J, Petty NK.

Genome Announc. 2017 Jan 19;5(3). pii: e01472-16. doi: 10.1128/genomeA.01472-16.

6.

A genomic island in Vibrio cholerae with VPI-1 site-specific recombination characteristics contains CRISPR-Cas and type VI secretion modules.

Labbate M, Orata FD, Petty NK, Jayatilleke ND, King WL, Kirchberger PC, Allen C, Mann G, Mutreja A, Thomson NR, Boucher Y, Charles IG.

Sci Rep. 2016 Nov 15;6:36891. doi: 10.1038/srep36891.

7.

Mechanisms Involved in Acquisition of blaNDM Genes by IncA/C2 and IncFIIY Plasmids.

Wailan AM, Sidjabat HE, Yam WK, Alikhan NF, Petty NK, Sartor AL, Williamson DA, Forde BM, Schembri MA, Beatson SA, Paterson DL, Walsh TR, Partridge SR.

Antimicrob Agents Chemother. 2016 Jun 20;60(7):4082-8. doi: 10.1128/AAC.00368-16. Print 2016 Jul.

8.

Explosive cell lysis as a mechanism for the biogenesis of bacterial membrane vesicles and biofilms.

Turnbull L, Toyofuku M, Hynen AL, Kurosawa M, Pessi G, Petty NK, Osvath SR, Cárcamo-Oyarce G, Gloag ES, Shimoni R, Omasits U, Ito S, Yap X, Monahan LG, Cavaliere R, Ahrens CH, Charles IG, Nomura N, Eberl L, Whitchurch CB.

Nat Commun. 2016 Apr 14;7:11220. doi: 10.1038/ncomms11220.

9.

Genomic Comparison of Two O111:H- Enterohemorrhagic Escherichia coli Isolates from a Historic Hemolytic-Uremic Syndrome Outbreak in Australia.

McAllister LJ, Bent SJ, Petty NK, Skippington E, Beatson SA, Paton JC, Paton AW.

Infect Immun. 2016 Jan 4;84(3):775-81. doi: 10.1128/IAI.01229-15.

10.

Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study.

Baker KS, Dallman TJ, Ashton PM, Day M, Hughes G, Crook PD, Gilbart VL, Zittermann S, Allen VG, Howden BP, Tomita T, Valcanis M, Harris SR, Connor TR, Sintchenko V, Howard P, Brown JD, Petty NK, Gouali M, Thanh DP, Keddy KH, Smith AM, Talukder KA, Faruque SM, Parkhill J, Baker S, Weill FX, Jenkins C, Thomson NR.

Lancet Infect Dis. 2015 Aug;15(8):913-21. doi: 10.1016/S1473-3099(15)00002-X. Epub 2015 Apr 27.

PMID:
25936611
11.

Molecular analysis of asymptomatic bacteriuria Escherichia coli strain VR50 reveals adaptation to the urinary tract by gene acquisition.

Beatson SA, Ben Zakour NL, Totsika M, Forde BM, Watts RE, Mabbett AN, Szubert JM, Sarkar S, Phan MD, Peters KM, Petty NK, Alikhan NF, Sullivan MJ, Gawthorne JA, Stanton-Cook M, Nhu NT, Chong TM, Yin WF, Chan KG, Hancock V, Ussery DW, Ulett GC, Schembri MA.

Infect Immun. 2015 May;83(5):1749-64. doi: 10.1128/IAI.02810-14. Epub 2015 Feb 9.

12.

Evolutionary adaptation of an AraC-like regulatory protein in Citrobacter rodentium and Escherichia species.

Tan A, Petty NK, Hocking D, Bennett-Wood V, Wakefield M, Praszkier J, Tauschek M, Yang J, Robins-Browne R.

Infect Immun. 2015 Apr;83(4):1384-95. doi: 10.1128/IAI.02697-14. Epub 2015 Jan 26.

13.

Comparative analyses of Legionella species identifies genetic features of strains causing Legionnaires' disease.

Gomez-Valero L, Rusniok C, Rolando M, Neou M, Dervins-Ravault D, Demirtas J, Rouy Z, Moore RJ, Chen H, Petty NK, Jarraud S, Etienne J, Steinert M, Heuner K, Gribaldo S, Médigue C, Glöckner G, Hartland EL, Buchrieser C.

Genome Biol. 2014;15(11):505.

14.

Genome analysis and CRISPR typing of Salmonella enterica serovar Virchow.

Bachmann NL, Petty NK, Ben Zakour NL, Szubert JM, Savill J, Beatson SA.

BMC Genomics. 2014 May 21;15:389. doi: 10.1186/1471-2164-15-389.

15.

Complete Genome Sequences of Two Citrobacter rodentium Bacteriophages, CR8 and CR44b.

Toribio AL, Pickard D, Cerdeño-Tárraga AM, Petty NK, Thomson N, Salmond G, Dougan G.

Genome Announc. 2014 May 29;2(3). pii: e00146-14. doi: 10.1128/genomeA.00146-14.

16.

Parallel independent evolution of pathogenicity within the genus Yersinia.

Reuter S, Connor TR, Barquist L, Walker D, Feltwell T, Harris SR, Fookes M, Hall ME, Petty NK, Fuchs TM, Corander J, Dufour M, Ringwood T, Savin C, Bouchier C, Martin L, Miettinen M, Shubin M, Riehm JM, Laukkanen-Ninios R, Sihvonen LM, Siitonen A, Skurnik M, Falcão JP, Fukushima H, Scholz HC, Prentice MB, Wren BW, Parkhill J, Carniel E, Achtman M, McNally A, Thomson NR.

Proc Natl Acad Sci U S A. 2014 May 6;111(18):6768-73. doi: 10.1073/pnas.1317161111. Epub 2014 Apr 21.

17.

Global dissemination of a multidrug resistant Escherichia coli clone.

Petty NK, Ben Zakour NL, Stanton-Cook M, Skippington E, Totsika M, Forde BM, Phan MD, Gomes Moriel D, Peters KM, Davies M, Rogers BA, Dougan G, Rodriguez-Baño J, Pascual A, Pitout JD, Upton M, Paterson DL, Walsh TR, Schembri MA, Beatson SA.

Proc Natl Acad Sci U S A. 2014 Apr 15;111(15):5694-9. doi: 10.1073/pnas.1322678111. Epub 2014 Mar 31.

18.

Identification of bacteriophages for biocontrol of the kiwifruit canker phytopathogen Pseudomonas syringae pv. actinidiae.

Frampton RA, Taylor C, Holguín Moreno AV, Visnovsky SB, Petty NK, Pitman AR, Fineran PC.

Appl Environ Microbiol. 2014 Apr;80(7):2216-28. doi: 10.1128/AEM.00062-14. Epub 2014 Jan 31.

19.

A distinct and divergent lineage of genomic island-associated Type IV Secretion Systems in Legionella.

Wee BA, Woolfit M, Beatson SA, Petty NK.

PLoS One. 2013 Dec 16;8(12):e82221. doi: 10.1371/journal.pone.0082221. eCollection 2013.

20.

Chaperone-usher fimbriae of Escherichia coli.

Wurpel DJ, Beatson SA, Totsika M, Petty NK, Schembri MA.

PLoS One. 2013;8(1):e52835. doi: 10.1371/journal.pone.0052835. Epub 2013 Jan 30.

21.

Insights into a multidrug resistant Escherichia coli pathogen of the globally disseminated ST131 lineage: genome analysis and virulence mechanisms.

Totsika M, Beatson SA, Sarkar S, Phan MD, Petty NK, Bachmann N, Szubert M, Sidjabat HE, Paterson DL, Upton M, Schembri MA.

PLoS One. 2011;6(10):e26578. doi: 10.1371/journal.pone.0026578. Epub 2011 Oct 28.

22.

Salmonella bongori provides insights into the evolution of the Salmonellae.

Fookes M, Schroeder GN, Langridge GC, Blondel CJ, Mammina C, Connor TR, Seth-Smith H, Vernikos GS, Robinson KS, Sanders M, Petty NK, Kingsley RA, Bäumler AJ, Nuccio SP, Contreras I, Santiviago CA, Maskell D, Barrow P, Humphrey T, Nastasi A, Roberts M, Frankel G, Parkhill J, Dougan G, Thomson NR.

PLoS Pathog. 2011 Aug;7(8):e1002191. doi: 10.1371/journal.ppat.1002191. Epub 2011 Aug 18.

23.

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons.

Alikhan NF, Petty NK, Ben Zakour NL, Beatson SA.

BMC Genomics. 2011 Aug 8;12:402. doi: 10.1186/1471-2164-12-402.

24.

Citrobacter rodentium is an unstable pathogen showing evidence of significant genomic flux.

Petty NK, Feltwell T, Pickard D, Clare S, Toribio AL, Fookes M, Roberts K, Monson R, Nair S, Kingsley RA, Bulgin R, Wiles S, Goulding D, Keane T, Corton C, Lennard N, Harris D, Willey D, Rance R, Yu L, Choudhary JS, Churcher C, Quail MA, Parkhill J, Frankel G, Dougan G, Salmond GP, Thomson NR.

PLoS Pathog. 2011 Apr;7(4):e1002018. doi: 10.1371/journal.ppat.1002018. Epub 2011 Apr 7.

25.

Easyfig: a genome comparison visualizer.

Sullivan MJ, Petty NK, Beatson SA.

Bioinformatics. 2011 Apr 1;27(7):1009-10. doi: 10.1093/bioinformatics/btr039. Epub 2011 Jan 28.

26.

Genome annotation: man versus machine.

Petty NK.

Nat Rev Microbiol. 2010 Nov;8(11):762. doi: 10.1038/nrmicro2462. No abstract available.

PMID:
20948549
27.

Legionella pneumophila strain 130b possesses a unique combination of type IV secretion systems and novel Dot/Icm secretion system effector proteins.

Schroeder GN, Petty NK, Mousnier A, Harding CR, Vogrin AJ, Wee B, Fry NK, Harrison TG, Newton HJ, Thomson NR, Beatson SA, Dougan G, Hartland EL, Frankel G.

J Bacteriol. 2010 Nov;192(22):6001-16. doi: 10.1128/JB.00778-10. Epub 2010 Sep 10.

28.

A conserved acetyl esterase domain targets diverse bacteriophages to the Vi capsular receptor of Salmonella enterica serovar Typhi.

Pickard D, Toribio AL, Petty NK, van Tonder A, Yu L, Goulding D, Barrell B, Rance R, Harris D, Wetter M, Wain J, Choudhary J, Thomson N, Dougan G.

J Bacteriol. 2010 Nov;192(21):5746-54. doi: 10.1128/JB.00659-10. Epub 2010 Sep 3.

29.

A commensal gone bad: complete genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407.

Crossman LC, Chaudhuri RR, Beatson SA, Wells TJ, Desvaux M, Cunningham AF, Petty NK, Mahon V, Brinkley C, Hobman JL, Savarino SJ, Turner SM, Pallen MJ, Penn CW, Parkhill J, Turner AK, Johnson TJ, Thomson NR, Smith SG, Henderson IR.

J Bacteriol. 2010 Nov;192(21):5822-31. doi: 10.1128/JB.00710-10. Epub 2010 Aug 27.

30.

Evidence for a lineage of virulent bacteriophages that target Campylobacter.

Timms AR, Cambray-Young J, Scott AE, Petty NK, Connerton PL, Clarke L, Seeger K, Quail M, Cummings N, Maskell DJ, Thomson NR, Connerton IF.

BMC Genomics. 2010 Mar 30;11:214. doi: 10.1186/1471-2164-11-214.

31.

The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli.

Petty NK, Bulgin R, Crepin VF, Cerdeño-Tárraga AM, Schroeder GN, Quail MA, Lennard N, Corton C, Barron A, Clark L, Toribio AL, Parkhill J, Dougan G, Frankel G, Thomson NR.

J Bacteriol. 2010 Jan;192(2):525-38. doi: 10.1128/JB.01144-09. Epub 2009 Nov 6.

32.

Genome watch: crops and robbers.

Petty NK.

Nat Rev Microbiol. 2008 Oct;6(10):716-7. doi: 10.1038/nrmicro2005.

PMID:
18850000
33.

A generalized transducing phage for the murine pathogen Citrobacter rodentium.

Petty NK, Toribio AL, Goulding D, Foulds I, Thomson N, Dougan G, Salmond GP.

Microbiology. 2007 Sep;153(Pt 9):2984-8.

34.

Biotechnological exploitation of bacteriophage research.

Petty NK, Evans TJ, Fineran PC, Salmond GP.

Trends Biotechnol. 2007 Jan;25(1):7-15. Epub 2006 Nov 20. Review.

PMID:
17113664
35.

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