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Activity/exercise-induced changes in the liver transcriptome after chronic spinal cord injury.

Chariker JH, Ohri SS, Gomes C, Brabazon F, Harman KA, DeVeau KM, Magnuson DSK, Hetman M, Petruska JC, Whittemore SR, Rouchka EC.

Sci Data. 2019 Jun 13;6(1):88. doi: 10.1038/s41597-019-0087-5.


Transcriptome of dorsal root ganglia caudal to a spinal cord injury with modulated behavioral activity.

Chariker JH, Gomes C, Brabazon F, Harman KA, Ohri SS, Magnuson DSK, Whittemore SR, Petruska JC, Rouchka EC.

Sci Data. 2019 Jun 7;6(1):83. doi: 10.1038/s41597-019-0088-4.


A Transient Developmental Background Finding in the Retina Observed in Neonatal Dogs in Juvenile Toxicology Studies.

Petruska JM, Remick AK, Lejeune T, Vezina M, Robinson K, Bussières M, Gilger BC, Dubielzig RR.

Toxicol Pathol. 2019 Jun;47(4):528-541. doi: 10.1177/0192623319844470. Epub 2019 May 7.


Detection of Differentially Expressed Cleavage Site Intervals Within 3' Untranslated Regions Using CSI-UTR Reveals Regulated Interaction Motifs.

Harrison BJ, Park JW, Gomes C, Petruska JC, Sapio MR, Iadarola MJ, Chariker JH, Rouchka EC.

Front Genet. 2019 Mar 12;10:182. doi: 10.3389/fgene.2019.00182. eCollection 2019.


Nociceptor-dependent locomotor dysfunction after clinically-modeled hindlimb muscle stretching in adult rats with spinal cord injury.

Keller AV, Hainline C, Rees K, Krupp S, Prince D, Wood BD, Shum-Siu A, Burke DA, Petruska JC, Magnuson DSK.

Exp Neurol. 2019 Aug;318:267-276. doi: 10.1016/j.expneurol.2019.03.006. Epub 2019 Mar 14.


Targeting of Hematologic Malignancies with PTC299, A Novel Potent Inhibitor of Dihydroorotate Dehydrogenase with Favorable Pharmaceutical Properties.

Cao L, Weetall M, Trotta C, Cintron K, Ma J, Kim MJ, Furia B, Romfo C, Graci JD, Li W, Du J, Sheedy J, Hedrick J, Risher N, Yeh S, Qi H, Arasu T, Hwang S, Lennox W, Kong R, Petruska J, Moon YC, Babiak J, Davis TW, Jacobson A, Almstead NG, Branstrom A, Colacino JM, Peltz SW.

Mol Cancer Ther. 2019 Jan;18(1):3-16. doi: 10.1158/1535-7163.MCT-18-0863. Epub 2018 Oct 23.


Relating DNA base-pairing in aqueous media to DNA polymerase fidelity.

Petruska J, Goodman MF.

Nat Rev Chem. 2017 Sep;1(9). pii: 0074. doi: 10.1038/s41570-017-0074. Epub 2017 Sep 6.


Framework for reanalysis of publicly available Affymetrix® GeneChip® data sets based on functional regions of interest.

Saka E, Harrison BJ, West K, Petruska JC, Rouchka EC.

BMC Genomics. 2017 Dec 6;18(Suppl 10):875. doi: 10.1186/s12864-017-4266-5.


Differential expression of ryanodine receptor isoforms after spinal cord injury.

Pelisch N, Gomes C, Nally JM, Petruska JC, Stirling DP.

Neurosci Lett. 2017 Nov 1;660:51-56. doi: 10.1016/j.neulet.2017.09.018. Epub 2017 Sep 9.


Cutaneous tissue damage induces long-lasting nociceptive sensitization and regulation of cellular stress- and nerve injury-associated genes in sensory neurons.

Rau KK, Hill CE, Harrison BJ, Venkat G, Koenig HM, Cook SB, Rabchevsky AG, Taylor BK, Hai T, Petruska JC.

Exp Neurol. 2016 Sep;283(Pt A):413-27. doi: 10.1016/j.expneurol.2016.06.002. Epub 2016 Jun 3.


The Adaptor Protein CD2AP Is a Coordinator of Neurotrophin Signaling-Mediated Axon Arbor Plasticity.

Harrison BJ, Venkat G, Lamb JL, Hutson TH, Drury C, Rau KK, Bunge MB, Mendell LM, Gage FH, Johnson RD, Hill CE, Rouchka EC, Moon LD, Petruska JC.

J Neurosci. 2016 Apr 13;36(15):4259-75. doi: 10.1523/JNEUROSCI.2423-15.2016.


Kinetic selection vs. free energy of DNA base pairing in control of polymerase fidelity.

Oertell K, Harcourt EM, Mohsen MG, Petruska J, Kool ET, Goodman MF.

Proc Natl Acad Sci U S A. 2016 Apr 19;113(16):E2277-85. doi: 10.1073/pnas.1600279113. Epub 2016 Apr 4.


Pharmacokinetics, pharmacodynamics, and efficacy of a small-molecule SMN2 splicing modifier in mouse models of spinal muscular atrophy.

Zhao X, Feng Z, Ling KK, Mollin A, Sheedy J, Yeh S, Petruska J, Narasimhan J, Dakka A, Welch EM, Karp G, Chen KS, Metzger F, Ratni H, Lotti F, Tisdale S, Naryshkin NA, Pellizzoni L, Paushkin S, Ko CP, Weetall M.

Hum Mol Genet. 2016 May 15;25(10):1885-1899. Epub 2016 Feb 29.


Transcriptional changes in sensory ganglia associated with primary afferent axon collateral sprouting in spared dermatome model.

Harrison BJ, Venkat G, Hutson T, Rau KK, Bunge MB, Mendell LM, Gage FH, Johnson RD, Hill C, Rouchka EC, Moon L, Petruska JC.

Genom Data. 2015 Oct 23;6:249-52. doi: 10.1016/j.gdata.2015.10.005. eCollection 2015 Dec.


Delayed intramuscular human neurotrophin-3 improves recovery in adult and elderly rats after stroke.

Duricki DA, Hutson TH, Kathe C, Soleman S, Gonzalez-Carter D, Petruska JC, Shine HD, Chen Q, Wood TC, Bernanos M, Cash D, Williams SC, Gage FH, Moon LD.

Brain. 2016 Jan;139(Pt 1):259-75. doi: 10.1093/brain/awv341. Epub 2015 Nov 27.


The effect of spinal cord injury on the neurochemical properties of vagal sensory neurons.

Herrity AN, Petruska JC, Stirling DP, Rau KK, Hubscher CH.

Am J Physiol Regul Integr Comp Physiol. 2015 Jun 15;308(12):R1021-33. doi: 10.1152/ajpregu.00445.2014. Epub 2015 Apr 8.


An Island-Based Approach for Differential Expression Analysis.

Eteleeb AM, Flight RM, Harrison BJ, Petruska JC, Rouchka EC.

ACM Conf Bioinform Comput Biol Biomed Inform (2013). 2013 Dec 31;2013:419-429.


The prickly, stressful business of burn pain.

Rau KK, Spears RC, Petruska JC.

Exp Neurol. 2014 Nov;261:752-6. doi: 10.1016/j.expneurol.2014.08.023. Epub 2014 Aug 27. No abstract available.


Distinct subclassification of DRG neurons innervating the distal colon and glans penis/distal urethra based on the electrophysiological current signature.

Rau KK, Petruska JC, Cooper BY, Johnson RD.

J Neurophysiol. 2014 Sep 15;112(6):1392-408. doi: 10.1152/jn.00560.2013. Epub 2014 May 28.


Identification of bladder and colon afferents in the nodose ganglia of male rats.

Herrity AN, Rau KK, Petruska JC, Stirling DP, Hubscher CH.

J Comp Neurol. 2014 Nov 1;522(16):3667-82. doi: 10.1002/cne.23629. Epub 2014 Jun 16.


categoryCompare, an analytical tool based on feature annotations.

Flight RM, Harrison BJ, Mohammad F, Bunge MB, Moon LD, Petruska JC, Rouchka EC.

Front Genet. 2014 Apr 29;5:98. doi: 10.3389/fgene.2014.00098. eCollection 2014.


Novel multi-system functional gains via task specific training in spinal cord injured male rats.

Ward PJ, Herrity AN, Smith RR, Willhite A, Harrison BJ, Petruska JC, Harkema SJ, Hubscher CH.

J Neurotrauma. 2014 May 1;31(9):819-33. doi: 10.1089/neu.2013.3082. Epub 2014 Mar 25.


Challenges and opportunities of sensory plasticity after SCI.

Petruska JC, Hubscher CH, Rabchevsky AG.

Front Physiol. 2013 Aug 27;4:231. doi: 10.3389/fphys.2013.00231. eCollection 2013. No abstract available.


Organization of sensory input to the nociceptive-specific cutaneous trunk muscle reflex in rat, an effective experimental system for examining nociception and plasticity.

Petruska JC, Barker DF, Garraway SM, Trainer R, Fransen JW, Seidman PA, Soto RG, Mendell LM, Johnson RD.

J Comp Neurol. 2014 Apr 1;522(5):1048-71. doi: 10.1002/cne.23461.


IB4-binding sensory neurons in the adult rat express a novel 3' UTR-extended isoform of CaMK4 that is associated with its localization to axons.

Harrison BJ, Flight RM, Gomes C, Venkat G, Ellis SR, Sankar U, Twiss JL, Rouchka EC, Petruska JC.

J Comp Neurol. 2014 Feb 1;522(2):308-36. doi: 10.1002/cne.23398.


The Transcriptional Response of Neurotrophins and Their Tyrosine Kinase Receptors in Lumbar Sensorimotor Circuits to Spinal Cord Contusion is Affected by Injury Severity and Survival Time.

Hougland MT, Harrison BJ, Magnuson DS, Rouchka EC, Petruska JC.

Front Physiol. 2013 Jan 9;3:478. doi: 10.3389/fphys.2012.00478. eCollection 2012.


AbsIDconvert: an absolute approach for converting genetic identifiers at different granularities.

Mohammad F, Flight RM, Harrison BJ, Petruska JC, Rouchka EC.

BMC Bioinformatics. 2012 Sep 12;13:229. doi: 10.1186/1471-2105-13-229.


Intramuscular AAV delivery of NT-3 alters synaptic transmission to motoneurons in adult rats.

Petruska JC, Kitay B, Boyce VS, Kaspar BK, Pearse DD, Gage FH, Mendell LM.

Eur J Neurosci. 2010 Sep;32(6):997-1005. doi: 10.1111/j.1460-9568.2010.07392.x. Epub 2010 Sep 8.


Early heart failure in the SMNDelta7 model of spinal muscular atrophy and correction by postnatal scAAV9-SMN delivery.

Bevan AK, Hutchinson KR, Foust KD, Braun L, McGovern VL, Schmelzer L, Ward JG, Petruska JC, Lucchesi PA, Burghes AH, Kaspar BK.

Hum Mol Genet. 2010 Oct 15;19(20):3895-905. doi: 10.1093/hmg/ddq300. Epub 2010 Jul 16.


Skin incision induces expression of axonal regeneration-related genes in adult rat spinal sensory neurons.

Hill CE, Harrison BJ, Rau KK, Hougland MT, Bunge MB, Mendell LM, Petruska JC.

J Pain. 2010 Nov;11(11):1066-73. doi: 10.1016/j.jpain.2010.02.001. Epub 2010 Jun 2.


DNA polymerase fidelity: comparing direct competition of right and wrong dNTP substrates with steady state and pre-steady state kinetics.

Bertram JG, Oertell K, Petruska J, Goodman MF.

Biochemistry. 2010 Jan 12;49(1):20-8. doi: 10.1021/bi901653g.


Phospholipidosis in neurons caused by posaconazole, without evidence for functional neurologic effects.

Cartwright ME, Petruska J, Arezzo J, Frank D, Litwak M, Morrissey RE, MacDonald J, Davis TE.

Toxicol Pathol. 2009 Dec;37(7):902-10. doi: 10.1177/0192623309348521.


Biochemical basis of immunological and retroviral responses to DNA-targeted cytosine deamination by activation-induced cytidine deaminase and APOBEC3G.

Chelico L, Pham P, Petruska J, Goodman MF.

J Biol Chem. 2009 Oct 9;284(41):27761-5. doi: 10.1074/jbc.R109.052449. Epub 2009 Aug 13. Review.


[Morphological-functional characteristic of periarticular tissue after total hip arthroplasty: histological, cytochemical and electron microscopy aspects].

Petruska J, Durcanský D, Makarevic A, Kubovicová E, Pivko J.

Acta Chir Orthop Traumatol Cech. 2008 Oct;75(5):375-81. Slovak.


Sensory afferents regenerated into dorsal columns after spinal cord injury remain in a chronic pathophysiological state.

Tan AM, Petruska JC, Mendell LM, Levine JM.

Exp Neurol. 2007 Aug;206(2):257-68. Epub 2007 May 23.


Changes in motoneuron properties and synaptic inputs related to step training after spinal cord transection in rats.

Petruska JC, Ichiyama RM, Jindrich DL, Crown ED, Tansey KE, Roy RR, Edgerton VR, Mendell LM.

J Neurosci. 2007 Apr 18;27(16):4460-71.


A developmental switch in acute sensitization of small dorsal root ganglion (DRG) neurons to capsaicin or noxious heating by NGF.

Zhu W, Galoyan SM, Petruska JC, Oxford GS, Mendell LM.

J Neurophysiol. 2004 Nov;92(5):3148-52. Epub 2004 Jun 16.


Viral delivery of NR2D subunits reduces Mg2+ block of NMDA receptor and restores NT-3-induced potentiation of AMPA-kainate responses in maturing rat motoneurons.

Arvanian VL, Bowers WJ, Petruska JC, Motin V, Manuzon H, Narrow WC, Federoff HJ, Mendell LM.

J Neurophysiol. 2004 Oct;92(4):2394-404. Epub 2004 May 19.


The many functions of nerve growth factor: multiple actions on nociceptors.

Petruska JC, Mendell LM.

Neurosci Lett. 2004 May 6;361(1-3):168-71. Review.


BDNF sensitizes the response of lamina II neurons to high threshold primary afferent inputs.

Garraway SM, Petruska JC, Mendell LM.

Eur J Neurosci. 2003 Nov;18(9):2467-76.


Mechanisms of sensitization of the response of single dorsal root ganglion cells from adult rat to noxious heat.

Galoyan SM, Petruska JC, Mendell LM.

Eur J Neurosci. 2003 Aug;18(3):535-41.


Processive AID-catalysed cytosine deamination on single-stranded DNA simulates somatic hypermutation.

Pham P, Bransteitter R, Petruska J, Goodman MF.

Nature. 2003 Jul 3;424(6944):103-7. Epub 2003 Jun 18.


Toxicity and carcinogenicity studies of chlorpromazine hydrochloride and p-cresidine in the p53 heterozygous mouse model.

Petruska JM, Frank DW, Freeman GB, Evans EW, MacDonald JS.

Toxicol Pathol. 2002 Nov-Dec;30(6):696-704.


Weak strand displacement activity enables human DNA polymerase beta to expand CAG/CTG triplet repeats at strand breaks.

Hartenstine MJ, Goodman MF, Petruska J.

J Biol Chem. 2002 Nov 1;277(44):41379-89. Epub 2002 Aug 23.


Co-expression of P2X receptor subunits on rat nodose neurons that bind the isolectin GS-I-B4.

Hubscher CH, Petruska JC, Rau KK, Johnson RD.

Neuroreport. 2001 Sep 17;12(13):2995-7.


Distribution of P2X1, P2X2, and P2X3 receptor subunits in rat primary afferents: relation to population markers and specific cell types.

Petruska JC, Cooper BY, Gu JG, Rau KK, Johnson RD.

J Chem Neuroanat. 2000 Nov;20(2):141-62.


P2X1 receptor subunit immunoreactivity and ATP-evoked fast currents in adult rat dorsal root ganglion neurons.

Petruska JC, Mena N, Nakatsuka T, Cooper BY, Johnson RD, Gu JG.

Neuroreport. 2000 Nov 9;11(16):3589-92.


Subclassified acutely dissociated cells of rat DRG: histochemistry and patterns of capsaicin-, proton-, and ATP-activated currents.

Petruska JC, Napaporn J, Johnson RD, Gu JG, Cooper BY.

J Neurophysiol. 2000 Nov;84(5):2365-79.

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