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Items: 1 to 50 of 468

1.

Correcting electrostatic artifacts due to net-charge changes in the calculation of ligand binding free energies.

Öhlknecht C, Lier B, Petrov D, Fuchs J, Oostenbrink C.

J Comput Chem. 2020 Jan 12. doi: 10.1002/jcc.26143. [Epub ahead of print]

PMID:
31930547
2.

Long live the king: chromosome-level assembly of the lion (Panthera leo) using linked-read, Hi-C, and long-read data.

Armstrong EE, Taylor RW, Miller DE, Kaelin CB, Barsh GS, Hadly EA, Petrov D.

BMC Biol. 2020 Jan 8;18(1):3. doi: 10.1186/s12915-019-0734-5.

3.

A Patient-Derived Glioblastoma Organoid Model and Biobank Recapitulates Inter- and Intra-tumoral Heterogeneity.

Jacob F, Salinas RD, Zhang DY, Nguyen PTT, Schnoll JG, Wong SZH, Thokala R, Sheikh S, Saxena D, Prokop S, Liu DA, Qian X, Petrov D, Lucas T, Chen HI, Dorsey JF, Christian KM, Binder ZA, Nasrallah M, Brem S, O'Rourke DM, Ming GL, Song H.

Cell. 2020 Jan 9;180(1):188-204.e22. doi: 10.1016/j.cell.2019.11.036. Epub 2019 Dec 26.

PMID:
31883794
4.

Pervasive Strong Selection at the Level of Codon Usage Bias in Drosophila melanogaster.

Machado HE, Lawrie DS, Petrov DA.

Genetics. 2020 Feb;214(2):511-528. doi: 10.1534/genetics.119.302542. Epub 2019 Dec 23.

PMID:
31871131
5.

NAIL-MS reveals the repair of 2-methylthiocytidine by AlkB in E. coli.

Reichle VF, Petrov DP, Weber V, Jung K, Kellner S.

Nat Commun. 2019 Dec 6;10(1):5600. doi: 10.1038/s41467-019-13565-9.

6.

Microsurgical excision of a compressive thoracic arachnoid cyst: Technical pearls.

Glauser G, Petrov D, Choudhri O.

Clin Case Rep. 2019 Sep 12;7(11):2289-2290. doi: 10.1002/ccr3.2420. eCollection 2019 Nov.

7.

Are postoperative pain and patient satisfaction influenced by the number of ports in VATS for malignant pleural effusion treatment?

Valchev D, Peeva K, Petrov D.

Postgrad Med. 2020 Jan;132(1):62-65. doi: 10.1080/00325481.2019.1697559. Epub 2020 Jan 24.

PMID:
31765233
8.

Polarization Effects in Simulations of Kaolinite-Water Interfaces.

Galicia-Andrés E, Petrov D, Gerzabek MH, Oostenbrink C, Tunega D.

Langmuir. 2019 Nov 26;35(47):15086-15099. doi: 10.1021/acs.langmuir.9b02945. Epub 2019 Nov 12.

PMID:
31663747
9.

Accurate Allele Frequencies from Ultra-low Coverage Pool-Seq Samples in Evolve-and-Resequence Experiments.

Tilk S, Bergland A, Goodman A, Schmidt P, Petrov D, Greenblum S.

G3 (Bethesda). 2019 Dec 3;9(12):4159-4168. doi: 10.1534/g3.119.400755.

10.

Single nucleotide mapping of trait space reveals Pareto fronts that constrain adaptation.

Li Y, Petrov DA, Sherlock G.

Nat Ecol Evol. 2019 Nov;3(11):1539-1551. doi: 10.1038/s41559-019-0993-0. Epub 2019 Oct 14.

PMID:
31611676
11.

Microbiome composition shapes rapid genomic adaptation of Drosophila melanogaster.

Rudman SM, Greenblum S, Hughes RC, Rajpurohit S, Kiratli O, Lowder DB, Lemmon SG, Petrov DA, Chaston JM, Schmidt P.

Proc Natl Acad Sci U S A. 2019 Oct 1;116(40):20025-20032. doi: 10.1073/pnas.1907787116. Epub 2019 Sep 16.

PMID:
31527278
12.

Empowering conservation practice with efficient and economical genotyping from poor quality samples.

Natesh M, Taylor RW, Truelove NK, Hadly EA, Palumbi SR, Petrov DA, Ramakrishnan U.

Methods Ecol Evol. 2019 Jun;10(6):853-859. doi: 10.1111/2041-210X.13173. Epub 2019 Apr 10.

13.

Evolutionary Dynamics in Structured Populations Under Strong Population Genetic Forces.

Feder AF, Pennings PS, Hermisson J, Petrov DA.

G3 (Bethesda). 2019 Oct 7;9(10):3395-3407. doi: 10.1534/g3.119.400605.

14.

Magnetic segregation effect in liquid crystals doped with carbon nanotubes.

Petrov DA, Skokov PK, Zakhlevnykh AN, Makarov DV.

Beilstein J Nanotechnol. 2019 Jul 22;10:1464-1474. doi: 10.3762/bjnano.10.145. eCollection 2019.

15.

Bardet-Biedl Syndrome with a Kidney Transplant, Esophageal Adenocarcinoma, and Postoperative Complications.

Yankov G, Mihalova T, Petkov R, Mekov E, Yankova S, Petrov D.

Case Rep Surg. 2019 Jul 2;2019:8983174. doi: 10.1155/2019/8983174. eCollection 2019.

16.

Neo-esophago-sternocutaneous fistula after coloesophagoplasty: A case report.

Yankov G, Yamakova Y, Vladimirov B, Ilieva V, Alexov S, Petrov D.

Asian Cardiovasc Thorac Ann. 2019 Oct;27(8):695-697. doi: 10.1177/0218492319865444. Epub 2019 Jul 18. No abstract available.

PMID:
31319674
17.

Exploiting selection at linked sites to infer the rate and strength of adaptation.

Uricchio LH, Petrov DA, Enard D.

Nat Ecol Evol. 2019 Jun;3(6):977-984. doi: 10.1038/s41559-019-0890-6. Epub 2019 May 6.

18.

Model and human observer reproducibility for detection of microcalcification clusters in digital breast tomosynthesis images of three-dimensionally structured test object.

Petrov D, Marshall N, Young K, Zhang G, Bosmans H.

J Med Imaging (Bellingham). 2019 Jan;6(1):015503. doi: 10.1117/1.JMI.6.1.015503. Epub 2019 Mar 23.

PMID:
30915383
19.

RIPK3 expression as a potential predictive and prognostic marker in metastatic colon cancer.

Conev NV, Dimitrova EG, Bogdanova MK, Kashlov YK, Chaushev BG, Radanova MA, Petrov DP, Georgiev KD, Bachvarov CH, Todorov GN, Kalchev KP, Popov HB, Manev RR, Donev IS.

Clin Invest Med. 2019 Mar 23;42(1):E31-E38. doi: 10.25011/cim.v42i1.32390.

PMID:
30904034
20.

Effects of pressure and composition on Raman spectra of CO-H2-CO2-CH4 mixtures.

Petrov DV, Matrosov II, Zaripov AR, Maznoy AS.

Spectrochim Acta A Mol Biomol Spectrosc. 2019 May 15;215:363-370. doi: 10.1016/j.saa.2019.03.006. Epub 2019 Mar 4.

PMID:
30852284
21.

Pharmacological screening of a new alpha-2 adrenergic receptor agonist, mafedine, in zebrafish.

Sysoev YI, Meshalkina DA, Petrov DV, Okovityi SV, Musienko PE, Kalueff AV.

Neurosci Lett. 2019 May 14;701:234-239. doi: 10.1016/j.neulet.2019.03.001. Epub 2019 Mar 2.

PMID:
30836120
22.

Novel approach using ultrasonic bone curettage and transoral robotic surgery for en bloc resection of cervical spine chordoma: case report.

Petrov D, Spadola M, Berger C, Glauser G, Mahmoud AF, O'Malley B, Malhotra NR.

J Neurosurg Spine. 2019 Mar 1:1-6. doi: 10.3171/2018.11.SPINE181162. [Epub ahead of print]

PMID:
30835711
23.

Systematic approach to a channelized Hotelling model observer implementation for a physical phantom containing mass-like lesions: Application to digital breast tomosynthesis.

Petrov D, Marshall NW, Young KC, Bosmans H.

Phys Med. 2019 Feb;58:8-20. doi: 10.1016/j.ejmp.2018.12.033. Epub 2019 Jan 17.

PMID:
30824154
24.

Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila.

Rech GE, Bogaerts-Márquez M, Barrón MG, Merenciano M, Villanueva-Cañas JL, Horváth V, Fiston-Lavier AS, Luyten I, Venkataram S, Quesneville H, Petrov DA, González J.

PLoS Genet. 2019 Feb 12;15(2):e1007900. doi: 10.1371/journal.pgen.1007900. eCollection 2019 Feb.

25.

Multimeric Rhodamine Dye-Induced Aggregation of Silver Nanoparticles for Surface-Enhanced Raman Scattering.

Bartolowits MD, Xin M, Petrov DP, Tague TJ Jr, Davisson VJ.

ACS Omega. 2019 Jan 31;4(1):140-145. doi: 10.1021/acsomega.8b02970. Epub 2019 Jan 3.

26.

Stable p-Wave Resonant Two-Dimensional Fermi-Bose Dimers.

Bazak B, Petrov DS.

Phys Rev Lett. 2018 Dec 28;121(26):263001. doi: 10.1103/PhysRevLett.121.263001.

PMID:
30636136
27.

Reaction kinetics of ultracold molecule-molecule collisions.

Hoffmann DK, Paintner T, Limmer W, Petrov DS, Denschlag JH.

Nat Commun. 2018 Dec 7;9(1):5244. doi: 10.1038/s41467-018-07576-1.

28.

[ONSTEP procedure for inguinal hernia repair].

Smirnov AV, Petrov DY, Panin AV, Dubrovsky AV, Nemkova AI.

Khirurgiia (Mosk). 2018;(10):12-17. doi: 10.17116/hirurgia201810112. Russian.

PMID:
30531730
29.

Tissue-Specific cis-Regulatory Divergence Implicates eloF in Inhibiting Interspecies Mating in Drosophila.

Combs PA, Krupp JJ, Khosla NM, Bua D, Petrov DA, Levine JD, Fraser HB.

Curr Biol. 2018 Dec 17;28(24):3969-3975.e3. doi: 10.1016/j.cub.2018.10.036. Epub 2018 Nov 29.

30.

Fully endoscopic microvascular decompression for hemifacial spasm.

Flanders TM, Blue R, Roberts S, McShane BJ, Wilent B, Tambi V, Petrov D, Lee JYK.

J Neurosurg. 2018 Oct 5;131(3):813-819. doi: 10.3171/2018.4.JNS172631.

PMID:
30497190
31.

Management of Primary Osseous Spinal Tumors with PET.

Batouli A, Gholamrezanezhad A, Petrov D, Rudkin S, Matcuk G, Jadvar H.

PET Clin. 2019 Jan;14(1):91-101. doi: 10.1016/j.cpet.2018.08.002. Epub 2018 Oct 24. Review.

PMID:
30420225
32.

Cost-effective assembly of the African wild dog (Lycaon pictus) genome using linked reads.

Armstrong EE, Taylor RW, Prost S, Blinston P, van der Meer E, Madzikanda H, Mufute O, Mandisodza-Chikerema R, Stuelpnagel J, Sillero-Zubiri C, Petrov D.

Gigascience. 2019 Feb 1;8(2). doi: 10.1093/gigascience/giy124.

33.

Evidence that RNA Viruses Drove Adaptive Introgression between Neanderthals and Modern Humans.

Enard D, Petrov DA.

Cell. 2018 Oct 4;175(2):360-371.e13. doi: 10.1016/j.cell.2018.08.034.

34.

[Minimally invasive treatment of rare forms of mechanical intestinal obstruction].

Lebedev AG, Levitskiy VD, Rogal MM, Yartsev PA, Petrov DI.

Khirurgiia (Mosk). 2018;(8. Vyp. 2):24-29. doi: 10.17116/hirurgia201808224. Russian.

PMID:
30199048
35.

Spatiotemporal dynamics and genome-wide association genome-wide association analysis of desiccation tolerance in Drosophila melanogaster.

Rajpurohit S, Gefen E, Bergland AO, Petrov DA, Gibbs AG, Schmidt PS.

Mol Ecol. 2018 Sep;27(17):3525-3540. doi: 10.1111/mec.14814. Epub 2018 Aug 13.

36.

Machine Learning for Large-Scale Quality Control of 3D Shape Models in Neuroimaging.

Petrov D, Gutman BA, Yu SJ, van Erp TGM, Turner JA, Schmaal L, Veltman D, Wang L, Alpert K, Isaev D, Zavaliangos-Petropulu A, Ching CRK, Calhoun V, Glahn D, Satterthwaite TD, Andreasen OA, Borgwardt S, Howells F, Groenewold N, Voineskos A, Radua J, Potkin SG, Crespo-Facorro B, Tordesillas-Gutiérrez D, Shen L, Lebedeva I, Spalletta G, Donohoe G, Kochunov P, Rosa PGP, James A, Dannlowski U, Baune BT, Aleman A, Gotlib IH, Walter H, Walter M, Soares JC, Ehrlich S, Gur RC, Doan NT, Agartz I, Westlye LT, Harrisberger F, Riecher-Rössler A, Uhlmann A, Stein DJ, Dickie EW, Pomarol-Clotet E, Fuentes-Claramonte P, Canales-Rodríguez EJ, Salvador R, Huang AJ, Roiz-Santiañez R, Cong S, Tomyshev A, Piras F, Vecchio D, Banaj N, Ciullo V, Hong E, Busatto G, Zanetti MV, Serpa MH, Cervenka S, Kelly S, Grotegerd D, Sacchet MD, Veer IM, Li M, Wu MJ, Irungu B, Walton E, Thompson PM.

Mach Learn Med Imaging. 2017 Sep;10541:371-378. doi: 10.1007/978-3-319-67389-9_43. Epub 2017 Sep 7.

37.

The two cathepsin B-like proteases of Arabidopsis thaliana are closely related enzymes with discrete endopeptidase and carboxydipeptidase activities.

Porodko A, Cirnski A, Petrov D, Raab T, Paireder M, Mayer B, Maresch D, Nika L, Biniossek ML, Gallois P, Schilling O, Oostenbrink C, Novinec M, Mach L.

Biol Chem. 2018 Sep 25;399(10):1223-1235. doi: 10.1515/hsz-2018-0186.

PMID:
29924726
38.

An epsilon wave on electrocardiogram.

Petrov DB.

BMJ. 2018 Jun 7;361:k1673. doi: 10.1136/bmj.k1673. No abstract available.

PMID:
29880694
39.

Inferior Vena Cava Filter Strut Penetration into the Vertebral Column: A Case of 10-Year Clinical Follow Up.

Petrov DA, Chauhan A, Fitzpatrick S, Altman DT, Casagranda B.

Curr Probl Diagn Radiol. 2018 Apr 18. pii: S0363-0188(18)30091-4. doi: 10.1067/j.cpradiol.2018.04.006. [Epub ahead of print]

PMID:
29773455
40.

Inter-laboratory comparison of channelized hotelling observer computation.

Ba A, Abbey CK, Baek J, Han M, Bouwman RW, Balta C, Brankov J, Massanes F, Gifford HC, Hernandez-Giron I, Veldkamp WJH, Petrov D, Marshall N, Samuelson FW, Zeng R, Solomon JB, Samei E, Timberg P, Förnvik H, Reiser I, Yu L, Gong H, Bochud FO.

Med Phys. 2018 Jul;45(7):3019-3030. doi: 10.1002/mp.12940. Epub 2018 May 17.

PMID:
29704868
41.

Tripolar chromosome segregation drives the association between maternal genotype at variants spanning PLK4 and aneuploidy in human preimplantation embryos.

McCoy RC, Newnham LJ, Ottolini CS, Hoffmann ER, Chatzimeletiou K, Cornejo OE, Zhan Q, Zaninovic N, Rosenwaks Z, Petrov DA, Demko ZP, Sigurjonsson S, Handyside AH.

Hum Mol Genet. 2018 Jul 15;27(14):2573-2585. doi: 10.1093/hmg/ddy147.

42.

Mapping the in vivo fitness landscape of lung adenocarcinoma tumor suppression in mice.

Rogers ZN, McFarland CD, Winters IP, Seoane JA, Brady JJ, Yoon S, Curtis C, Petrov DA, Winslow MM.

Nat Genet. 2018 Apr;50(4):483-486. doi: 10.1038/s41588-018-0083-2. Epub 2018 Apr 2.

43.

Hidden Complexity of Yeast Adaptation under Simple Evolutionary Conditions.

Li Y, Venkataram S, Agarwala A, Dunn B, Petrov DA, Sherlock G, Fisher DS.

Curr Biol. 2018 Feb 19;28(4):515-525.e6. doi: 10.1016/j.cub.2018.01.009. Epub 2018 Feb 8.

44.

Environment of the Eu3+ Ion within Nanocrystalline Eu-Doped BaAl2O4: Correlation of X-ray Diffraction, Mössbauer Spectroscopy, X-ray Absorption Spectroscopy, and Photoluminescence Investigations.

Gržeta B, Lützenkirchen-Hecht D, Vrankić M, Bosnar S, Šarić A, Takahashi M, Petrov D, Bišćan M.

Inorg Chem. 2018 Feb 19;57(4):1744-1756. doi: 10.1021/acs.inorgchem.7b02322. Epub 2018 Feb 8.

PMID:
29420019
45.

Magnetic field induced orientational transitions in liquid crystals doped with carbon nanotubes.

Petrov DA, Skokov PK, Zakhlevnykh AN.

Beilstein J Nanotechnol. 2017 Dec 29;8:2807-2817. doi: 10.3762/bjnano.8.280. eCollection 2017.

46.

Rapid seasonal evolution in innate immunity of wild Drosophila melanogaster.

Behrman EL, Howick VM, Kapun M, Staubach F, Bergland AO, Petrov DA, Lazzaro BP, Schmidt PS.

Proc Biol Sci. 2018 Jan 10;285(1870). pii: 20172599. doi: 10.1098/rspb.2017.2599.

47.

Multiplexed in vivo homology-directed repair and tumor barcoding enables parallel quantification of Kras variant oncogenicity.

Winters IP, Chiou SH, Paulk NK, McFarland CD, Lalgudi PV, Ma RK, Lisowski L, Connolly AJ, Petrov DA, Kay MA, Winslow MM.

Nat Commun. 2017 Dec 12;8(1):2053. doi: 10.1038/s41467-017-01519-y.

48.

Perioperative Internal Iliac Artery Balloon Occlusion, In the Setting of Placenta Accreta and Its Variants: The Role of the Interventional Radiologist.

Petrov DA, Karlberg B, Singh K, Hartman M, Mittal PK.

Curr Probl Diagn Radiol. 2018 Nov;47(6):445-451. doi: 10.1067/j.cpradiol.2017.10.010. Epub 2017 Nov 10. Review.

PMID:
29224889
49.

Ion-induced modification of the sucrose network and its impact on melting of freeze-dried liposomes. DSC and molecular dynamics study.

Bakarić D, Petrov D, Mouvenchery YK, Heiβler S, Oostenbrink C, Schaumann GE.

Chem Phys Lipids. 2018 Jan;210:38-46. doi: 10.1016/j.chemphyslip.2017.11.015. Epub 2017 Nov 24.

PMID:
29179944
50.

Enhancement of Raman scattering of a gaseous medium near the surface of a silver holographic grating.

Petrov DV, Zaripov AR, Toropov NA.

Opt Lett. 2017 Nov 15;42(22):4728-4731. doi: 10.1364/OL.42.004728.

PMID:
29140354

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