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Items: 1 to 50 of 139

1.

Leveraging Human Microbiome Features to Diagnose and Stratify Children with Irritable Bowel Syndrome.

Hollister EB, Oezguen N, Chumpitazi BP, Luna RA, Weidler EM, Rubio-Gonzales M, Dahdouli M, Cope JL, Mistretta TA, Raza S, Metcalf GA, Muzny DM, Gibbs RA, Petrosino JF, Heitkemper M, Savidge TC, Shulman RJ, Versalovic J.

J Mol Diagn. 2019 Apr 15. pii: S1525-1578(18)30235-6. doi: 10.1016/j.jmoldx.2019.01.006. [Epub ahead of print]

PMID:
31005411
2.

Frequency of Tongue Cleaning Impacts the Human Tongue Microbiome Composition and Enterosalivary Circulation of Nitrate.

Tribble GD, Angelov N, Weltman R, Wang BY, Eswaran SV, Gay IC, Parthasarathy K, Dao DV, Richardson KN, Ismail NM, Sharina IG, Hyde ER, Ajami NJ, Petrosino JF, Bryan NS.

Front Cell Infect Microbiol. 2019 Mar 1;9:39. doi: 10.3389/fcimb.2019.00039. eCollection 2019.

3.

Dietary Nutrients Involved in One-Carbon Metabolism and Colonic Mucosa-Associated Gut Microbiome in Individuals with an Endoscopically Normal Colon.

Gurwara S, Ajami NJ, Jang A, Hessel FC, Chen L, Plew S, Wang Z, Graham DY, Hair C, White DL, Kramer J, Kourkoumpetis T, Hoffman K, Cole R, Hou J, Husain N, Jarbrink-Sehgal M, Hernaez R, Kanwal F, Ketwaroo G, Shah R, Velez M, Natarajan Y, El-Serag HB, Petrosino JF, Jiao L.

Nutrients. 2019 Mar 13;11(3). pii: E613. doi: 10.3390/nu11030613.

4.

Using formalin fixed paraffin embedded tissue to characterize the preterm gut microbiota in necrotising enterocolitis and spontaneous isolated perforation using marginal and diseased tissue.

Stewart CJ, Fatemizadeh R, Parsons P, Lamb CA, Shady DA, Petrosino JF, Hair AB.

BMC Microbiol. 2019 Mar 4;19(1):52. doi: 10.1186/s12866-019-1426-6.

5.

Bacteroides ovatus ATCC 8483 monotherapy is superior to traditional fecal transplant and multi-strain bacteriotherapy in a murine colitis model.

Ihekweazu FD, Fofanova TY, Queliza K, Nagy-Szakal D, Stewart CJ, Engevik MA, Hulten KG, Tatevian N, Graham DY, Versalovic J, Petrosino JF, Kellermayer R.

Gut Microbes. 2019 Jan 21:1-17. doi: 10.1080/19490976.2018.1560753. [Epub ahead of print]

PMID:
30663928
6.

Serum metabolome is associated with nasopharyngeal microbiota and disease severity among infants with bronchiolitis.

Stewart CJ, Mansbach JM, Ajami NJ, Petrosino JF, Zhu Z, Liang L, Camargo CA Jr, Hasegawa K.

J Infect Dis. 2019 Jan 9. doi: 10.1093/infdis/jiz021. [Epub ahead of print]

PMID:
30629185
7.

Haemophilus-dominant nasopharyngeal microbiota is associated with delayed clearance of respiratory syncytial virus in infants hospitalized for bronchiolitis.

Mansbach JM, Hasegawa K, Piedra PA, Avadhanula V, Petrosino JF, Sullivan AF, Espinola JA, Camargo CA Jr.

J Infect Dis. 2018 Dec 25. doi: 10.1093/infdis/jiy741. [Epub ahead of print]

PMID:
30590603
8.

Insular Resting State Functional Connectivity is Associated with Gut Microbiota Diversity.

Curtis K, Stewart CJ, Robinson M, Molfese DL, Gosnell SN, Kosten TR, Petrosino JF, De La Garza R II, Salas R.

Eur J Neurosci. 2018 Dec 16. doi: 10.1111/ejn.14305. [Epub ahead of print]

PMID:
30554441
9.

Human milk oligosaccharides, milk microbiome and infant gut microbiome modulate neonatal rotavirus infection.

Ramani S, Stewart CJ, Laucirica DR, Ajami NJ, Robertson B, Autran CA, Shinge D, Rani S, Anandan S, Hu L, Ferreon JC, Kuruvilla KA, Petrosino JF, Venkataram Prasad BV, Bode L, Kang G, Estes MK.

Nat Commun. 2018 Nov 27;9(1):5010. doi: 10.1038/s41467-018-07476-4.

10.

Safety and preliminary efficacy of orally administered lyophilized fecal microbiota product compared with frozen product given by enema for recurrent Clostridium difficile infection: A randomized clinical trial.

Jiang ZD, Jenq RR, Ajami NJ, Petrosino JF, Alexander AA, Ke S, Iqbal T, DuPont AW, Muldrew K, Shi Y, Peterson C, Do KA, DuPont HL.

PLoS One. 2018 Nov 2;13(11):e0205064. doi: 10.1371/journal.pone.0205064. eCollection 2018.

11.

Temporal development of the gut microbiome in early childhood from the TEDDY study.

Stewart CJ, Ajami NJ, O'Brien JL, Hutchinson DS, Smith DP, Wong MC, Ross MC, Lloyd RE, Doddapaneni H, Metcalf GA, Muzny D, Gibbs RA, Vatanen T, Huttenhower C, Xavier RJ, Rewers M, Hagopian W, Toppari J, Ziegler AG, She JX, Akolkar B, Lernmark A, Hyoty H, Vehik K, Krischer JP, Petrosino JF.

Nature. 2018 Oct;562(7728):583-588. doi: 10.1038/s41586-018-0617-x. Epub 2018 Oct 24.

12.

The human gut microbiome in early-onset type 1 diabetes from the TEDDY study.

Vatanen T, Franzosa EA, Schwager R, Tripathi S, Arthur TD, Vehik K, Lernmark Å, Hagopian WA, Rewers MJ, She JX, Toppari J, Ziegler AG, Akolkar B, Krischer JP, Stewart CJ, Ajami NJ, Petrosino JF, Gevers D, Lähdesmäki H, Vlamakis H, Huttenhower C, Xavier RJ.

Nature. 2018 Oct;562(7728):589-594. doi: 10.1038/s41586-018-0620-2. Epub 2018 Oct 24.

13.

Prebiotics, Probiotics, and Acetate Supplementation Prevent Hypertension in a Model of Obstructive Sleep Apnea.

Ganesh BP, Nelson JW, Eskew JR, Ganesan A, Ajami NJ, Petrosino JF, Bryan RM Jr, Durgan DJ.

Hypertension. 2018 Nov;72(5):1141-1150. doi: 10.1161/HYPERTENSIONAHA.118.11695.

PMID:
30354816
14.

Lung tissue microbial profile in lung cancer is distinct from emphysema.

Liu Y, O'Brien JL, Ajami NJ, Scheurer ME, Amirian ES, Armstrong G, Tsavachidis S, Thrift AP, Jiao L, Wong MC, Smith DP, Spitz MR, Bondy ML, Petrosino JF, Kheradmand F.

Am J Cancer Res. 2018 Sep 1;8(9):1775-1787. eCollection 2018.

15.

Circulating 25-hydroxyvitamin D, nasopharyngeal microbiota, and bronchiolitis severity.

Toivonen L, Hasegawa K, Ajami NJ, Celedón JC, Mansbach JM, Petrosino JF, Camargo CA Jr.

Pediatr Allergy Immunol. 2018 Dec;29(8):877-880. doi: 10.1111/pai.12977. Epub 2018 Nov 13. No abstract available.

PMID:
30152883
16.

Correction: Effects of tobacco smoke and electronic cigarette vapor exposure on the oral and gut microbiota in humans: a pilot study.

Stewart CJ, Auchtung TA, Ajami NJ, Velasquez K, Smith DP, De La Garza R 2nd, Salas R, Petrosino JF.

PeerJ. 2018 Aug 23;6. pii: e4693/correction-1. doi: 10.7717/peerj.4693/correction-1. eCollection 2018.

17.

Maximal viral information recovery from sequence data using VirMAP.

Ajami NJ, Wong MC, Ross MC, Lloyd RE, Petrosino JF.

Nat Commun. 2018 Aug 10;9(1):3205. doi: 10.1038/s41467-018-05658-8.

18.

Effects of tobacco smoke and electronic cigarette vapor exposure on the oral and gut microbiota in humans: a pilot study.

Stewart CJ, Auchtung TA, Ajami NJ, Velasquez K, Smith DP, De La Garza R 2nd, Salas R, Petrosino JF.

PeerJ. 2018 Apr 30;6:e4693. doi: 10.7717/peerj.4693. eCollection 2018. Erratum in: PeerJ. 2018 Aug 23;6:.

19.

Oral microbiota reveals signs of acculturation in Mexican American women.

Hoffman KL, Hutchinson DS, Fowler J, Smith DP, Ajami NJ, Zhao H, Scheet P, Chow WH, Petrosino JF, Daniel CR.

PLoS One. 2018 Apr 25;13(4):e0194100. doi: 10.1371/journal.pone.0194100. eCollection 2018.

20.

Antibiotic-mediated bacteriome depletion in ApcMin/+ mice is associated with reduction in mucus-producing goblet cells and increased colorectal cancer progression.

Kaur K, Saxena A, Debnath I, O'Brien JL, Ajami NJ, Auchtung TA, Petrosino JF, Sougiannis AJ, Depaep S, Chumanevich A, Gummadidala PM, Omebeyinje MH, Banerjee S, Chatzistamou I, Chakraborty P, Fayad R, Berger FG, Carson JA, Chanda A.

Cancer Med. 2018 May;7(5):2003-2012. doi: 10.1002/cam4.1460. Epub 2018 Apr 6.

21.

Investigating Colonization of the Healthy Adult Gastrointestinal Tract by Fungi.

Auchtung TA, Fofanova TY, Stewart CJ, Nash AK, Wong MC, Gesell JR, Auchtung JM, Ajami NJ, Petrosino JF.

mSphere. 2018 Mar 28;3(2). pii: e00092-18. doi: 10.1128/mSphere.00092-18. eCollection 2018 Mar-Apr.

22.

A Lachnospiraceae-dominated bacterial signature in the fecal microbiota of HIV-infected individuals from Colombia, South America.

San-Juan-Vergara H, Zurek E, Ajami NJ, Mogollon C, Peña M, Portnoy I, Vélez JI, Cadena-Cruz C, Diaz-Olmos Y, Hurtado-Gómez L, Sanchez-Sit S, Hernández D, Urruchurtu I, Di-Ruggiero P, Guardo-García E, Torres N, Vidal-Orjuela O, Viasus D, Petrosino JF, Cervantes-Acosta G.

Sci Rep. 2018 Mar 14;8(1):4479. doi: 10.1038/s41598-018-22629-7.

23.

Influence of fecal collection conditions and 16S rRNA gene sequencing at two centers on human gut microbiota analysis.

Penington JS, Penno MAS, Ngui KM, Ajami NJ, Roth-Schulze AJ, Wilcox SA, Bandala-Sanchez E, Wentworth JM, Barry SC, Brown CY, Couper JJ, Petrosino JF, Papenfuss AT, Harrison LC; ENDIA Study Group*.

Sci Rep. 2018 Mar 12;8(1):4386. doi: 10.1038/s41598-018-22491-7.

24.

Arginine Metabolism Is Altered in Adults with A-β + Ketosis-Prone Diabetes.

Mulukutla SN, Hsu JW, Gaba R, Bohren KM, Guthikonda A, Iyer D, Ajami NJ, Petrosino JF, Hampe CS, Ram N, Jahoor F, Balasubramanyam A.

J Nutr. 2018 Feb 1;148(2):185-193. doi: 10.1093/jn/nxx032.

25.

The microbiome in precision medicine: the way forward.

Petrosino JF.

Genome Med. 2018 Feb 22;10(1):12. doi: 10.1186/s13073-018-0525-6. Review.

26.

Impact of Oral Fidaxomicin Administration on the Intestinal Microbiota and Susceptibility to Clostridium difficile Colonization in Mice.

Ajami NJ, Cope JL, Wong MC, Petrosino JF, Chesnel L.

Antimicrob Agents Chemother. 2018 Apr 26;62(5). pii: e02112-17. doi: 10.1128/AAC.02112-17. Print 2018 May.

27.

Challenges of Francisella classification exemplified by an atypical clinical isolate.

Matz LM, Kamdar KY, Holder ME, Metcalf GA, Weissenberger GM, Meng Q, Vee V, Han Y, Muzny DM, Gibbs RA, Johnson CL, Revell PA, Petrosino JF.

Diagn Microbiol Infect Dis. 2018 Apr;90(4):241-247. doi: 10.1016/j.diagmicrobio.2017.11.023. Epub 2017 Dec 6.

28.

The association between anterior nares and nasopharyngeal microbiota in infants hospitalized for bronchiolitis.

Luna PN, Hasegawa K, Ajami NJ, Espinola JA, Henke DM, Petrosino JF, Piedra PA, Sullivan AF, Camargo CA Jr, Shaw CA, Mansbach JM.

Microbiome. 2018 Jan 3;6(1):2. doi: 10.1186/s40168-017-0385-0.

29.

Respiratory Syncytial Virus and Rhinovirus Bronchiolitis Are Associated With Distinct Metabolic Pathways.

Stewart CJ, Hasegawa K, Wong MC, Ajami NJ, Petrosino JF, Piedra PA, Espinola JA, Tierney CN, Camargo CA Jr, Mansbach JM.

J Infect Dis. 2018 Mar 13;217(7):1160-1169. doi: 10.1093/infdis/jix680.

30.

Successful collection of stool samples for microbiome analyses from a large community-based population of elderly men.

Abrahamson M, Hooker E, Ajami NJ, Petrosino JF, Orwoll ES.

Contemp Clin Trials Commun. 2017 Sep;7:158-162. doi: 10.1016/j.conctc.2017.07.002. Epub 2017 Jul 6.

31.

The gut mycobiome of the Human Microbiome Project healthy cohort.

Nash AK, Auchtung TA, Wong MC, Smith DP, Gesell JR, Ross MC, Stewart CJ, Metcalf GA, Muzny DM, Gibbs RA, Ajami NJ, Petrosino JF.

Microbiome. 2017 Nov 25;5(1):153. doi: 10.1186/s40168-017-0373-4.

32.

Gut microbiome modulates response to anti-PD-1 immunotherapy in melanoma patients.

Gopalakrishnan V, Spencer CN, Nezi L, Reuben A, Andrews MC, Karpinets TV, Prieto PA, Vicente D, Hoffman K, Wei SC, Cogdill AP, Zhao L, Hudgens CW, Hutchinson DS, Manzo T, Petaccia de Macedo M, Cotechini T, Kumar T, Chen WS, Reddy SM, Szczepaniak Sloane R, Galloway-Pena J, Jiang H, Chen PL, Shpall EJ, Rezvani K, Alousi AM, Chemaly RF, Shelburne S, Vence LM, Okhuysen PC, Jensen VB, Swennes AG, McAllister F, Marcelo Riquelme Sanchez E, Zhang Y, Le Chatelier E, Zitvogel L, Pons N, Austin-Breneman JL, Haydu LE, Burton EM, Gardner JM, Sirmans E, Hu J, Lazar AJ, Tsujikawa T, Diab A, Tawbi H, Glitza IC, Hwu WJ, Patel SP, Woodman SE, Amaria RN, Davies MA, Gershenwald JE, Hwu P, Lee JE, Zhang J, Coussens LM, Cooper ZA, Futreal PA, Daniel CR, Ajami NJ, Petrosino JF, Tetzlaff MT, Sharma P, Allison JP, Jenq RR, Wargo JA.

Science. 2018 Jan 5;359(6371):97-103. doi: 10.1126/science.aan4236. Epub 2017 Nov 2.

33.

Impact of Age-Related Mitochondrial Dysfunction and Exercise on Intestinal Microbiota Composition.

Houghton D, Stewart CJ, Stamp C, Nelson A, Aj Ami NJ, Petrosino JF, Wipat A, Trenell MI, Turnbull DM, Greaves LC.

J Gerontol A Biol Sci Med Sci. 2018 Apr 17;73(5):571-578. doi: 10.1093/gerona/glx197.

34.

Complete Genome Sequence of Vibrio gazogenes ATCC 43942.

Gummadidala PM, Holder ME, O'Brien JL, Ajami NJ, Petrosino JF, Mitra C, Chen YP, Decho AW, Chanda A.

Genome Announc. 2017 Jul 27;5(30). pii: e00733-17. doi: 10.1128/genomeA.00733-17.

35.

Sphingolipid metabolism potential in fecal microbiome and bronchiolitis in infants: a case-control study.

Hasegawa K, Stewart CJ, Mansbach JM, Linnemann RW, Ajami NJ, Petrosino JF, Camargo CA.

BMC Res Notes. 2017 Jul 26;10(1):325. doi: 10.1186/s13104-017-2659-9.

36.

Impact of environmental microbiota on human microbiota of workers in academic mouse research facilities: An observational study.

Lai PS, Allen JG, Hutchinson DS, Ajami NJ, Petrosino JF, Winters T, Hug C, Wartenberg GR, Vallarino J, Christiani DC.

PLoS One. 2017 Jul 13;12(7):e0180969. doi: 10.1371/journal.pone.0180969. eCollection 2017.

37.

Longitudinal development of the gut microbiome and metabolome in preterm neonates with late onset sepsis and healthy controls.

Stewart CJ, Embleton ND, Marrs ECL, Smith DP, Fofanova T, Nelson A, Skeath T, Perry JD, Petrosino JF, Berrington JE, Cummings SP.

Microbiome. 2017 Jul 12;5(1):75. doi: 10.1186/s40168-017-0295-1.

38.

Cesarean or Vaginal Birth Does Not Impact the Longitudinal Development of the Gut Microbiome in a Cohort of Exclusively Preterm Infants.

Stewart CJ, Embleton ND, Clements E, Luna PN, Smith DP, Fofanova TY, Nelson A, Taylor G, Orr CH, Petrosino JF, Berrington JE, Cummings SP.

Front Microbiol. 2017 Jun 6;8:1008. doi: 10.3389/fmicb.2017.01008. eCollection 2017.

39.

Serum LL-37 Levels Associated With Severity of Bronchiolitis and Viral Etiology.

Mansbach JM, Hasegawa K, Ajami NJ, Petrosino JF, Piedra PA, Tierney CN, Espinola JA, Camargo CA.

Clin Infect Dis. 2017 Sep 15;65(6):967-975. doi: 10.1093/cid/cix483.

40.

Microbiome disruption and recovery in the fish Gambusia affinis following exposure to broad-spectrum antibiotic.

Carlson JM, Leonard AB, Hyde ER, Petrosino JF, Primm TP.

Infect Drug Resist. 2017 May 9;10:143-154. doi: 10.2147/IDR.S129055. eCollection 2017.

41.

Associations of Nasopharyngeal Metabolome and Microbiome with Severity among Infants with Bronchiolitis. A Multiomic Analysis.

Stewart CJ, Mansbach JM, Wong MC, Ajami NJ, Petrosino JF, Camargo CA Jr, Hasegawa K.

Am J Respir Crit Care Med. 2017 Oct 1;196(7):882-891. doi: 10.1164/rccm.201701-0071OC.

42.

Fusobacterium Nucleatum Subspecies Animalis Influences Proinflammatory Cytokine Expression and Monocyte Activation in Human Colorectal Tumors.

Ye X, Wang R, Bhattacharya R, Boulbes DR, Fan F, Xia L, Adoni H, Ajami NJ, Wong MC, Smith DP, Petrosino JF, Venable S, Qiao W, Baladandayuthapani V, Maru D, Ellis LM.

Cancer Prev Res (Phila). 2017 Jul;10(7):398-409. doi: 10.1158/1940-6207.CAPR-16-0178. Epub 2017 May 8.

43.

Development of the cutaneous microbiome in the preterm infant: A prospective longitudinal study.

Pammi M, O'Brien JL, Ajami NJ, Wong MC, Versalovic J, Petrosino JF.

PLoS One. 2017 Apr 27;12(4):e0176669. doi: 10.1371/journal.pone.0176669. eCollection 2017.

44.

Single Delivery of High-Diversity Fecal Microbiota Preparation by Colonoscopy Is Safe and Effective in Increasing Microbial Diversity in Active Ulcerative Colitis.

Jacob V, Crawford C, Cohen-Mekelburg S, Viladomiu M, Putzel GG, Schneider Y, Chabouni F, OʼNeil S, Bosworth B, Woo V, Ajami NJ, Petrosino JF, Gerardin Y, Kassam Z, Smith M, Iliev ID, Sonnenberg GF, Artis D, Scherl E, Longman RS.

Inflamm Bowel Dis. 2017 Jun;23(6):903-911. doi: 10.1097/MIB.0000000000001132.

45.

The relationship between nasopharyngeal CCL5 and microbiota on disease severity among infants with bronchiolitis.

Hasegawa K, Mansbach JM, Ajami NJ, Petrosino JF, Freishtat RJ, Teach SJ, Piedra PA, Camargo CA Jr.

Allergy. 2017 Nov;72(11):1796-1800. doi: 10.1111/all.13160. Epub 2017 Apr 12.

46.

Isolation and concentration of bacteria from blood using microfluidic membraneless dialysis and dielectrophoresis.

D'Amico L, Ajami NJ, Adachi JA, Gascoyne PR, Petrosino JF.

Lab Chip. 2017 Mar 29;17(7):1340-1348. doi: 10.1039/c6lc01277a.

47.

Association of Maternal Gestational Weight Gain With the Infant Fecal Microbiota.

Robinson A, Fiechtner L, Roche B, Ajami NJ, Petrosino JF, Camargo CA Jr, Taveras EM, Hasegawa K.

J Pediatr Gastroenterol Nutr. 2017 Nov;65(5):509-515. doi: 10.1097/MPG.0000000000001566.

48.

Characterization of oral and gut microbiome temporal variability in hospitalized cancer patients.

Galloway-Peña JR, Smith DP, Sahasrabhojane P, Wadsworth WD, Fellman BM, Ajami NJ, Shpall EJ, Daver N, Guindani M, Petrosino JF, Kontoyiannis DP, Shelburne SA.

Genome Med. 2017 Feb 28;9(1):21. doi: 10.1186/s13073-017-0409-1.

49.

Randomised clinical trial: faecal microbiota transplantation for recurrent Clostridum difficile infection - fresh, or frozen, or lyophilised microbiota from a small pool of healthy donors delivered by colonoscopy.

Jiang ZD, Ajami NJ, Petrosino JF, Jun G, Hanis CL, Shah M, Hochman L, Ankoma-Sey V, DuPont AW, Wong MC, Alexander A, Ke S, DuPont HL.

Aliment Pharmacol Ther. 2017 Apr;45(7):899-908. doi: 10.1111/apt.13969. Epub 2017 Feb 21.

50.

IgA-coated E. coli enriched in Crohn's disease spondyloarthritis promote TH17-dependent inflammation.

Viladomiu M, Kivolowitz C, Abdulhamid A, Dogan B, Victorio D, Castellanos JG, Woo V, Teng F, Tran NL, Sczesnak A, Chai C, Kim M, Diehl GE, Ajami NJ, Petrosino JF, Zhou XK, Schwartzman S, Mandl LA, Abramowitz M, Jacob V, Bosworth B, Steinlauf A, Scherl EJ, Wu HJ, Simpson KW, Longman RS.

Sci Transl Med. 2017 Feb 8;9(376). pii: eaaf9655. doi: 10.1126/scitranslmed.aaf9655.

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