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Items: 1 to 50 of 56

1.

Protective Dps-DNA co-crystallization in stressed cells: an in vitro structural study by small-angle X-ray scattering and cryo-electron tomography.

Dadinova LA, Chesnokov YM, Kamyshinsky RA, Orlov IA, Petoukhov MV, Mozhaev AA, Soshinskaya EY, Lazarev VN, Manuvera VA, Orekhov AS, Vasiliev AL, Shtykova EV.

FEBS Lett. 2019 Jun;593(12):1360-1371. doi: 10.1002/1873-3468.13439. Epub 2019 May 28.

PMID:
31090064
2.

Solution Structure, Self-Assembly, and Membrane Interactions of the Matrix Protein from Newcastle Disease Virus at Neutral and Acidic pH.

Shtykova EV, Petoukhov MV, Dadinova LA, Fedorova NV, Tashkin VY, Timofeeva TA, Ksenofontov AL, Loshkarev NA, Baratova LA, Jeffries CM, Svergun DI, Batishchev OV.

J Virol. 2019 Mar 5;93(6). pii: e01450-18. doi: 10.1128/JVI.01450-18. Print 2019 Mar 15.

PMID:
30567981
3.

Human MICAL1: Activation by the small GTPase Rab8 and small-angle X-ray scattering studies on the oligomerization state of MICAL1 and its complex with Rab8.

Esposito A, Ventura V, Petoukhov MV, Rai A, Svergun DI, Vanoni MA.

Protein Sci. 2019 Jan;28(1):150-166. doi: 10.1002/pro.3512. Epub 2018 Oct 31.

PMID:
30242933
4.

Structural Study of the Complex Formed by Ceruloplasmin and Macrophage Migration Inhibitory Factor.

Sokolov AV, Dadinova LA, Petoukhov MV, Bourenkov G, Dubova KM, Amarantov SV, Volkov VV, Kostevich VA, Gorbunov NP, Grudinina NA, Vasilyev VB, Samygina VR.

Biochemistry (Mosc). 2018 Jun;83(6):701-707. doi: 10.1134/S000629791806007X.

5.

Robo1 Forms a Compact Dimer-of-Dimers Assembly.

Aleksandrova N, Gutsche I, Kandiah E, Avilov SV, Petoukhov MV, Seiradake E, McCarthy AA.

Structure. 2018 Feb 6;26(2):320-328.e4. doi: 10.1016/j.str.2017.12.003. Epub 2018 Jan 4.

6.

SAS-Based Structural Modelling and Model Validation.

Petoukhov MV, Tuukkanen A.

Adv Exp Med Biol. 2017;1009:87-105. doi: 10.1007/978-981-10-6038-0_6.

PMID:
29218555
7.

Structural insights of RmXyn10A - A prebiotic-producing GH10 xylanase with a non-conserved aglycone binding region.

Aronsson A, Güler F, Petoukhov MV, Crennell SJ, Svergun DI, Linares-Pastén JA, Nordberg Karlsson E.

Biochim Biophys Acta Proteins Proteom. 2018 Feb;1866(2):292-306. doi: 10.1016/j.bbapap.2017.11.006. Epub 2017 Nov 14.

8.

ATSAS 2.8: a comprehensive data analysis suite for small-angle scattering from macromolecular solutions.

Franke D, Petoukhov MV, Konarev PV, Panjkovich A, Tuukkanen A, Mertens HDT, Kikhney AG, Hajizadeh NR, Franklin JM, Jeffries CM, Svergun DI.

J Appl Crystallogr. 2017 Jun 26;50(Pt 4):1212-1225. doi: 10.1107/S1600576717007786. eCollection 2017 Aug 1.

9.

A Spring-Loaded Mechanism Governs the Clamp-like Dynamics of the Skp Chaperone.

Holdbrook DA, Burmann BM, Huber RG, Petoukhov MV, Svergun DI, Hiller S, Bond PJ.

Structure. 2017 Jul 5;25(7):1079-1088.e3. doi: 10.1016/j.str.2017.05.018. Epub 2017 Jun 22.

10.

Proteins involved in sleep homeostasis: Biophysical characterization of INC and its partners.

Pirone L, Smaldone G, Esposito C, Balasco N, Petoukhov MV, Spilotros A, Svergun DI, Di Gaetano S, Vitagliano L, Pedone EM.

Biochimie. 2016 Dec;131:106-114. doi: 10.1016/j.biochi.2016.09.013. Epub 2016 Sep 24.

PMID:
27678190
11.

Rapid automated superposition of shapes and macromolecular models using spherical harmonics.

Konarev PV, Petoukhov MV, Svergun DI.

J Appl Crystallogr. 2016 May 16;49(Pt 3):953-960. eCollection 2016 Jun 1.

12.

Solution Behavior of the Intrinsically Disordered N-Terminal Domain of Retinoid X Receptor α in the Context of the Full-Length Protein.

Belorusova A, Osz J, Petoukhov MV, Peluso-Iltis C, Kieffer B, Svergun DI, Rochel N.

Biochemistry. 2016 Mar 29;55(12):1741-1748. doi: 10.1021/acs.biochem.5b01122. Epub 2016 Mar 15.

13.

Conformational plasticity of RepB, the replication initiator protein of promiscuous streptococcal plasmid pMV158.

Boer DR, Ruiz-Masó JA, Rueda M, Petoukhov MV, Machón C, Svergun DI, Orozco M, del Solar G, Coll M.

Sci Rep. 2016 Feb 15;6:20915. doi: 10.1038/srep20915.

14.

KSHV but not MHV-68 LANA induces a strong bend upon binding to terminal repeat viral DNA.

Ponnusamy R, Petoukhov MV, Correia B, Custodio TF, Juillard F, Tan M, Pires de Miranda M, Carrondo MA, Simas JP, Kaye KM, Svergun DI, McVey CE.

Nucleic Acids Res. 2015 Nov 16;43(20):10039-54. doi: 10.1093/nar/gkv987. Epub 2015 Sep 30.

15.

Ambiguity assessment of small-angle scattering curves from monodisperse systems.

Petoukhov MV, Svergun DI.

Acta Crystallogr D Biol Crystallogr. 2015 May;71(Pt 5):1051-8. doi: 10.1107/S1399004715002576. Epub 2015 Apr 24.

PMID:
25945570
16.

The C-terminal random coil region tunes the Ca²⁺-binding affinity of S100A4 through conformational activation.

Duelli A, Kiss B, Lundholm I, Bodor A, Petoukhov MV, Svergun DI, Nyitray L, Katona G.

PLoS One. 2014 May 15;9(5):e97654. doi: 10.1371/journal.pone.0097654. eCollection 2014.

17.

Crystal structures of substrate-bound chitinase from the psychrophilic bacterium Moritella marina and its structure in solution.

Malecki PH, Vorgias CE, Petoukhov MV, Svergun DI, Rypniewski W.

Acta Crystallogr D Biol Crystallogr. 2014 Mar;70(Pt 3):676-84. doi: 10.1107/S1399004713032264. Epub 2014 Feb 15.

PMID:
24598737
18.

Endophilin-A1 BAR domain interaction with arachidonyl CoA.

Petoukhov MV, Weissenhorn W, Svergun DI.

Front Mol Biosci. 2014 Oct 28;1:20. doi: 10.3389/fmolb.2014.00020. eCollection 2014.

19.

Small angle X-ray scattering studies of mitochondrial glutaminase C reveal extended flexible regions, and link oligomeric state with enzyme activity.

Møller M, Nielsen SS, Ramachandran S, Li Y, Tria G, Streicher W, Petoukhov MV, Cerione RA, Gillilan RE, Vestergaard B.

PLoS One. 2013 Sep 30;8(9):e74783. doi: 10.1371/journal.pone.0074783. eCollection 2013. Erratum in: PLoS One. 2013;8(12). doi:10.1371/annotation/80d64df5-065e-4be9-a4e8-31c4cba67114. Li, Yuxing [corrected to Li, Yunxing].

20.

Reconstruction of quaternary structure from X-ray scattering by equilibrium mixtures of biological macromolecules.

Petoukhov MV, Billas IM, Takacs M, Graewert MA, Moras D, Svergun DI.

Biochemistry. 2013 Oct 1;52(39):6844-55. doi: 10.1021/bi400731u. Epub 2013 Sep 19.

PMID:
24000896
21.

The asymmetric binding of PGC-1α to the ERRα and ERRγ nuclear receptor homodimers involves a similar recognition mechanism.

Takacs M, Petoukhov MV, Atkinson RA, Roblin P, Ogi FX, Demeler B, Potier N, Chebaro Y, Dejaegere A, Svergun DI, Moras D, Billas IM.

PLoS One. 2013 Jul 9;8(7):e67810. doi: 10.1371/journal.pone.0067810. Print 2013.

22.

Ceruloplasmin: macromolecular assemblies with iron-containing acute phase proteins.

Samygina VR, Sokolov AV, Bourenkov G, Petoukhov MV, Pulina MO, Zakharova ET, Vasilyev VB, Bartunik H, Svergun DI.

PLoS One. 2013 Jul 3;8(7):e67145. doi: 10.1371/journal.pone.0067145. Print 2013.

23.

Using stable MutS dimers and tetramers to quantitatively analyze DNA mismatch recognition and sliding clamp formation.

Groothuizen FS, Fish A, Petoukhov MV, Reumer A, Manelyte L, Winterwerp HH, Marinus MG, Lebbink JH, Svergun DI, Friedhoff P, Sixma TK.

Nucleic Acids Res. 2013 Sep;41(17):8166-81. doi: 10.1093/nar/gkt582. Epub 2013 Jul 1.

24.

Applications of small-angle X-ray scattering to biomacromolecular solutions.

Petoukhov MV, Svergun DI.

Int J Biochem Cell Biol. 2013 Feb;45(2):429-37. doi: 10.1016/j.biocel.2012.10.017. Epub 2012 Nov 9. Review.

PMID:
23142499
25.

MaxOcc: a web portal for maximum occurrence analysis.

Bertini I, Ferella L, Luchinat C, Parigi G, Petoukhov MV, Ravera E, Rosato A, Svergun DI.

J Biomol NMR. 2012 Aug;53(4):271-80. doi: 10.1007/s10858-012-9638-1. Epub 2012 May 26.

PMID:
22639196
26.

New developments in the ATSAS program package for small-angle scattering data analysis.

Petoukhov MV, Franke D, Shkumatov AV, Tria G, Kikhney AG, Gajda M, Gorba C, Mertens HD, Konarev PV, Svergun DI.

J Appl Crystallogr. 2012 Mar 15;45(Pt 2):342-350. eCollection 2012 Apr 1.

27.

The structure of the unliganded extracellular domain of the interleukin-6 signal transducer gp130 in solution.

Lorenzen I, Shang W, Perbandt M, Petoukhov MV, Svergun DI, Waetzig GH, Rose-John S, Hilgenfeld R, Grötzinger J.

Eur J Cell Biol. 2011 Jun-Jul;90(6-7):515-20. doi: 10.1016/j.ejcb.2010.09.012. Epub 2010 Oct 30.

PMID:
21035897
28.

Conformational space of flexible biological macromolecules from average data.

Bertini I, Giachetti A, Luchinat C, Parigi G, Petoukhov MV, Pierattelli R, Ravera E, Svergun DI.

J Am Chem Soc. 2010 Sep 29;132(38):13553-8. doi: 10.1021/ja1063923.

PMID:
20822180
29.

Quaternary structure of the human Cdt1-Geminin complex regulates DNA replication licensing.

De Marco V, Gillespie PJ, Li A, Karantzelis N, Christodoulou E, Klompmaker R, van Gerwen S, Fish A, Petoukhov MV, Iliou MS, Lygerou Z, Medema RH, Blow JJ, Svergun DI, Taraviras S, Perrakis A.

Proc Natl Acad Sci U S A. 2009 Nov 24;106(47):19807-12. doi: 10.1073/pnas.0905281106. Epub 2009 Nov 11.

30.

A common structural basis for pH- and calmodulin-mediated regulation in plant glutamate decarboxylase.

Gut H, Dominici P, Pilati S, Astegno A, Petoukhov MV, Svergun DI, Grütter MG, Capitani G.

J Mol Biol. 2009 Sep 18;392(2):334-51. doi: 10.1016/j.jmb.2009.06.080. Epub 2009 Jul 4.

PMID:
19580813
31.

Molecular shape and prominent role of beta-strand swapping in organization of dUTPase oligomers.

Takács E, Barabás O, Petoukhov MV, Svergun DI, Vértessy BG.

FEBS Lett. 2009 Mar 4;583(5):865-71. doi: 10.1016/j.febslet.2009.02.011. Epub 2009 Feb 11.

32.

Kinetic and mechanistic characterization of Mycobacterium tuberculosis glutamyl-tRNA synthetase and determination of its oligomeric structure in solution.

Paravisi S, Fumagalli G, Riva M, Morandi P, Morosi R, Konarev PV, Petoukhov MV, Bernier S, Chênevert R, Svergun DI, Curti B, Vanoni MA.

FEBS J. 2009 Mar;276(5):1398-417. doi: 10.1111/j.1742-4658.2009.06880.x.

33.

Quaternary structure of flavorubredoxin as revealed by synchrotron radiation small-angle X-ray scattering.

Petoukhov MV, Vicente JB, Crowley PB, Carrondo MA, Teixeira M, Svergun DI.

Structure. 2008 Sep 10;16(9):1428-36. doi: 10.1016/j.str.2008.06.009.

34.

X-ray scattering study of activated Arp2/3 complex with bound actin-WCA.

Boczkowska M, Rebowski G, Petoukhov MV, Hayes DB, Svergun DI, Dominguez R.

Structure. 2008 May;16(5):695-704. doi: 10.1016/j.str.2008.02.013.

35.

Engineering the NK1 fragment of hepatocyte growth factor/scatter factor as a MET receptor antagonist.

Youles M, Holmes O, Petoukhov MV, Nessen MA, Stivala S, Svergun DI, Gherardi E.

J Mol Biol. 2008 Mar 28;377(3):616-22. doi: 10.1016/j.jmb.2008.01.034. Epub 2008 Jan 18.

PMID:
18291418
36.

Interaction between the C-terminal region of human myelin basic protein and calmodulin: analysis of complex formation and solution structure.

Majava V, Petoukhov MV, Hayashi N, Pirilä P, Svergun DI, Kursula P.

BMC Struct Biol. 2008 Feb 19;8:10. doi: 10.1186/1472-6807-8-10.

37.

X-ray and neutron small-angle scattering analysis of the complex formed by the Met receptor and the Listeria monocytogenes invasion protein InlB.

Niemann HH, Petoukhov MV, Härtlein M, Moulin M, Gherardi E, Timmins P, Heinz DW, Svergun DI.

J Mol Biol. 2008 Mar 21;377(2):489-500. doi: 10.1016/j.jmb.2008.01.027. Epub 2008 Jan 16.

PMID:
18262542
38.

The subnanometer resolution structure of the glutamate synthase 1.2-MDa hexamer by cryoelectron microscopy and its oligomerization behavior in solution: functional implications.

Cottevieille M, Larquet E, Jonic S, Petoukhov MV, Caprini G, Paravisi S, Svergun DI, Vanoni MA, Boisset N.

J Biol Chem. 2008 Mar 28;283(13):8237-49. doi: 10.1074/jbc.M708529200. Epub 2008 Jan 16.

39.

Analysis of X-ray and neutron scattering from biomacromolecular solutions.

Petoukhov MV, Svergun DI.

Curr Opin Struct Biol. 2007 Oct;17(5):562-71. Epub 2007 Aug 21. Review.

PMID:
17714935
40.

Fine-tuning of intrinsic N-Oct-3 POU domain allostery by regulatory DNA targets.

Alazard R, Mourey L, Ebel C, Konarev PV, Petoukhov MV, Svergun DI, Erard M.

Nucleic Acids Res. 2007;35(13):4420-32. Epub 2007 Jun 18.

41.

Structural characterization of flexible proteins using small-angle X-ray scattering.

Bernadó P, Mylonas E, Petoukhov MV, Blackledge M, Svergun DI.

J Am Chem Soc. 2007 May 2;129(17):5656-64. Epub 2007 Apr 6.

PMID:
17411046
42.

Multiple assembly states of lumazine synthase: a model relating catalytic function and molecular assembly.

Zhang X, Konarev PV, Petoukhov MV, Svergun DI, Xing L, Cheng RH, Haase I, Fischer M, Bacher A, Ladenstein R, Meining W.

J Mol Biol. 2006 Sep 29;362(4):753-70. Epub 2006 Jul 28.

PMID:
16935304
43.

Conformation of polypyrimidine tract binding protein in solution.

Petoukhov MV, Monie TP, Allain FH, Matthews S, Curry S, Svergun DI.

Structure. 2006 Jun;14(6):1021-7.

44.

Joint use of small-angle X-ray and neutron scattering to study biological macromolecules in solution.

Petoukhov MV, Svergun DI.

Eur Biophys J. 2006 Sep;35(7):567-76. Epub 2006 Apr 25.

PMID:
16636827
45.

Structural basis of hepatocyte growth factor/scatter factor and MET signalling.

Gherardi E, Sandin S, Petoukhov MV, Finch J, Youles ME, Ofverstedt LG, Miguel RN, Blundell TL, Vande Woude GF, Skoglund U, Svergun DI.

Proc Natl Acad Sci U S A. 2006 Mar 14;103(11):4046-51. Epub 2006 Mar 6.

46.

Global rigid body modeling of macromolecular complexes against small-angle scattering data.

Petoukhov MV, Svergun DI.

Biophys J. 2005 Aug;89(2):1237-50. Epub 2005 May 27.

47.

Triticum durum metallothionein. Isolation of the gene and structural characterization of the protein using solution scattering and molecular modeling.

Bilecen K, Ozturk UH, Duru AD, Sutlu T, Petoukhov MV, Svergun DI, Koch MH, Sezerman UO, Cakmak I, Sayers Z.

J Biol Chem. 2005 Apr 8;280(14):13701-11. Epub 2005 Jan 4.

48.

Structural characterization of the nonameric assembly of an Archaeal alpha-L-fucosidase by synchrotron small angle X-ray scattering.

Rosano C, Zuccotti S, Cobucci-Ponzano B, Mazzone M, Rossi M, Moracci M, Petoukhov MV, Svergun DI, Bolognesi M.

Biochem Biophys Res Commun. 2004 Jul 16;320(1):176-82.

PMID:
15207718
49.

Structural characterization of T-protein of the Escherichia coli glycine cleavage system by X-ray small angle scattering.

Orun O, Koch MH, Kan B, Svergun DI, Petoukhov MV, Sayers Z.

Cell Mol Biol (Noisy-le-grand). 2003;49 Online Pub:OL453-9.

PMID:
14995075
50.

Conformation of full-length Bruton tyrosine kinase (Btk) from synchrotron X-ray solution scattering.

Márquez JA, Smith CI, Petoukhov MV, Lo Surdo P, Mattsson PT, Knekt M, Westlund A, Scheffzek K, Saraste M, Svergun DI.

EMBO J. 2003 Sep 15;22(18):4616-24.

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