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Items: 1 to 50 of 172

1.

Genome Instability Induced by Low Levels of Replicative DNA Polymerases in Yeast.

Zheng DQ, Petes TD.

Genes (Basel). 2018 Nov 7;9(11). pii: E539. doi: 10.3390/genes9110539. Review.

2.

GC content elevates mutation and recombination rates in the yeast Saccharomyces cerevisiae.

Kiktev DA, Sheng Z, Lobachev KS, Petes TD.

Proc Natl Acad Sci U S A. 2018 Jul 24;115(30):E7109-E7118. doi: 10.1073/pnas.1807334115. Epub 2018 Jul 9.

3.

Effects of Temperature on the Meiotic Recombination Landscape of the Yeast Saccharomyces cerevisiae.

Zhang K, Wu XC, Zheng DQ, Petes TD.

MBio. 2017 Dec 19;8(6). pii: e02099-17. doi: 10.1128/mBio.02099-17.

4.

Nanopore sequencing of complex genomic rearrangements in yeast reveals mechanisms of repeat-mediated double-strand break repair.

McGinty RJ, Rubinstein RG, Neil AJ, Dominska M, Kiktev D, Petes TD, Mirkin SM.

Genome Res. 2017 Dec;27(12):2072-2082. doi: 10.1101/gr.228148.117. Epub 2017 Nov 7.

5.

High-resolution mapping of heteroduplex DNA formed during UV-induced and spontaneous mitotic recombination events in yeast.

Yin Y, Dominska M, Yim E, Petes TD.

Elife. 2017 Jul 17;6. pii: e28069. doi: 10.7554/eLife.28069.

6.

Properties of Mitotic and Meiotic Recombination in the Tandemly-Repeated CUP1 Gene Cluster in the Yeast Saccharomyces cerevisiae.

Zhao Y, Dominska M, Petrova A, Bagshaw H, Kokoska RJ, Petes TD.

Genetics. 2017 Jun;206(2):785-800. doi: 10.1534/genetics.117.201285. Epub 2017 Apr 4.

7.

Global analysis of genomic instability caused by DNA replication stress in Saccharomyces cerevisiae.

Zheng DQ, Zhang K, Wu XC, Mieczkowski PA, Petes TD.

Proc Natl Acad Sci U S A. 2016 Dec 13;113(50):E8114-E8121. Epub 2016 Nov 28.

8.

High-Resolution Mapping of Homologous Recombination Events in rad3 Hyper-Recombination Mutants in Yeast.

Andersen SL, Zhang A, Dominska M, Moriel-Carretero M, Herrera-Moyano E, Aguilera A, Petes TD.

PLoS Genet. 2016 Mar 11;12(3):e1005938. doi: 10.1371/journal.pgen.1005938. eCollection 2016 Mar.

9.

Mre11-Sae2 and RPA Collaborate to Prevent Palindromic Gene Amplification.

Deng SK, Yin Y, Petes TD, Symington LS.

Mol Cell. 2015 Nov 5;60(3):500-8. doi: 10.1016/j.molcel.2015.09.027.

10.

Elevated Genome-Wide Instability in Yeast Mutants Lacking RNase H Activity.

O'Connell K, Jinks-Robertson S, Petes TD.

Genetics. 2015 Nov;201(3):963-75. doi: 10.1534/genetics.115.182725. Epub 2015 Sep 22.

11.

The Transient Inactivation of the Master Cell Cycle Phosphatase Cdc14 Causes Genomic Instability in Diploid Cells of Saccharomyces cerevisiae.

Quevedo O, Ramos-Pérez C, Petes TD, Machín F.

Genetics. 2015 Jul;200(3):755-69. doi: 10.1534/genetics.115.177626. Epub 2015 May 12.

12.

Genome-destabilizing effects associated with top1 loss or accumulation of top1 cleavage complexes in yeast.

Andersen SL, Sloan RS, Petes TD, Jinks-Robertson S.

PLoS Genet. 2015 Apr 1;11(4):e1005098. doi: 10.1371/journal.pgen.1005098. eCollection 2015 Apr.

13.

Recombination between homologous chromosomes induced by unrepaired UV-generated DNA damage requires Mus81p and is suppressed by Mms2p.

Yin Y, Petes TD.

PLoS Genet. 2015 Mar 4;11(3):e1005026. doi: 10.1371/journal.pgen.1005026. eCollection 2015 Mar.

14.

Chromosome rearrangements via template switching between diverged repeated sequences.

Anand RP, Tsaponina O, Greenwell PW, Lee CS, Du W, Petes TD, Haber JE.

Genes Dev. 2014 Nov 1;28(21):2394-406. doi: 10.1101/gad.250258.114.

15.

Structures of naturally evolved CUP1 tandem arrays in yeast indicate that these arrays are generated by unequal nonhomologous recombination.

Zhao Y, Strope PK, Kozmin SG, McCusker JH, Dietrich FS, Kokoska RJ, Petes TD.

G3 (Bethesda). 2014 Sep 17;4(11):2259-69. doi: 10.1534/g3.114.012922.

16.

High-resolution mapping of two types of spontaneous mitotic gene conversion events in Saccharomyces cerevisiae.

Yim E, O'Connell KE, St Charles J, Petes TD.

Genetics. 2014 Sep;198(1):181-92. doi: 10.1534/genetics.114.167395. Epub 2014 Jul 1.

17.

The role of Exo1p exonuclease in DNA end resection to generate gene conversion tracts in Saccharomyces cerevisiae.

Yin Y, Petes TD.

Genetics. 2014 Aug;197(4):1097-109. doi: 10.1534/genetics.114.164517. Epub 2014 May 16.

18.

Genome-wide high-resolution mapping of chromosome fragile sites in Saccharomyces cerevisiae.

Song W, Dominska M, Greenwell PW, Petes TD.

Proc Natl Acad Sci U S A. 2014 May 27;111(21):E2210-8. doi: 10.1073/pnas.1406847111. Epub 2014 May 5.

19.

Genome-wide high-resolution mapping of UV-induced mitotic recombination events in Saccharomyces cerevisiae.

Yin Y, Petes TD.

PLoS Genet. 2013 Oct;9(10):e1003894. doi: 10.1371/journal.pgen.1003894. Epub 2013 Oct 31.

20.

Genome rearrangements caused by interstitial telomeric sequences in yeast.

Aksenova AY, Greenwell PW, Dominska M, Shishkin AA, Kim JC, Petes TD, Mirkin SM.

Proc Natl Acad Sci U S A. 2013 Dec 3;110(49):19866-71. doi: 10.1073/pnas.1319313110. Epub 2013 Nov 4.

21.

High-resolution mapping of spontaneous mitotic recombination hotspots on the 1.1 Mb arm of yeast chromosome IV.

St Charles J, Petes TD.

PLoS Genet. 2013 Apr;9(4):e1003434. doi: 10.1371/journal.pgen.1003434. Epub 2013 Apr 4.

22.

Nonrandom distribution of interhomolog recombination events induced by breakage of a dicentric chromosome in Saccharomyces cerevisiae.

Song W, Gawel M, Dominska M, Greenwell PW, Hazkani-Covo E, Bloom K, Petes TD.

Genetics. 2013 May;194(1):69-80. doi: 10.1534/genetics.113.150144. Epub 2013 Feb 14.

23.

Gene copy-number variation in haploid and diploid strains of the yeast Saccharomyces cerevisiae.

Zhang H, Zeidler AF, Song W, Puccia CM, Malc E, Greenwell PW, Mieczkowski PA, Petes TD, Argueso JL.

Genetics. 2013 Mar;193(3):785-801. doi: 10.1534/genetics.112.146522. Epub 2013 Jan 10.

24.

Genomic deletions and point mutations induced in Saccharomyces cerevisiae by the trinucleotide repeats (GAA·TTC) associated with Friedreich's ataxia.

Tang W, Dominska M, Gawel M, Greenwell PW, Petes TD.

DNA Repair (Amst). 2013 Jan 1;12(1):10-7. doi: 10.1016/j.dnarep.2012.10.001. Epub 2012 Nov 20.

25.

Reciprocal uniparental disomy in yeast.

Andersen SL, Petes TD.

Proc Natl Acad Sci U S A. 2012 Jun 19;109(25):9947-52. doi: 10.1073/pnas.1207736109. Epub 2012 Jun 4.

26.

Haploidization in Saccharomyces cerevisiae induced by a deficiency in homologous recombination.

Song W, Petes TD.

Genetics. 2012 May;191(1):279-84. doi: 10.1534/genetics.111.138180. Epub 2012 Feb 23.

27.

High-resolution genome-wide analysis of irradiated (UV and γ-rays) diploid yeast cells reveals a high frequency of genomic loss of heterozygosity (LOH) events.

St Charles J, Hazkani-Covo E, Yin Y, Andersen SL, Dietrich FS, Greenwell PW, Malc E, Mieczkowski P, Petes TD.

Genetics. 2012 Apr;190(4):1267-84. doi: 10.1534/genetics.111.137927. Epub 2012 Jan 20.

28.

Friedreich's ataxia (GAA)n•(TTC)n repeats strongly stimulate mitotic crossovers in Saccharomyces cerevisae.

Tang W, Dominska M, Greenwell PW, Harvanek Z, Lobachev KS, Kim HM, Narayanan V, Mirkin SM, Petes TD.

PLoS Genet. 2011 Jan 13;7(1):e1001270. doi: 10.1371/journal.pgen.1001270.

29.

Meiotic chromosome segregation in triploid strains of Saccharomyces cerevisiae.

St Charles J, Hamilton ML, Petes TD.

Genetics. 2010 Oct;186(2):537-50. doi: 10.1534/genetics.110.121533. Epub 2010 Aug 9.

30.

Chromosome rearrangements and aneuploidy in yeast strains lacking both Tel1p and Mec1p reflect deficiencies in two different mechanisms.

McCulley JL, Petes TD.

Proc Natl Acad Sci U S A. 2010 Jun 22;107(25):11465-70. doi: 10.1073/pnas.1006281107. Epub 2010 Jun 7.

31.

From the Cover: mitotic gene conversion events induced in G1-synchronized yeast cells by gamma rays are similar to spontaneous conversion events.

Lee PS, Petes TD.

Proc Natl Acad Sci U S A. 2010 Apr 20;107(16):7383-8. doi: 10.1073/pnas.1001940107. Epub 2010 Mar 15.

32.

Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production.

Argueso JL, Carazzolle MF, Mieczkowski PA, Duarte FM, Netto OV, Missawa SK, Galzerani F, Costa GG, Vidal RO, Noronha MF, Dominska M, Andrietta MG, Andrietta SR, Cunha AF, Gomes LH, Tavares FC, Alcarde AR, Dietrich FS, McCusker JH, Petes TD, Pereira GA.

Genome Res. 2009 Dec;19(12):2258-70. doi: 10.1101/gr.091777.109. Epub 2009 Oct 7.

33.

Chromosome aberrations resulting from double-strand DNA breaks at a naturally occurring yeast fragile site composed of inverted ty elements are independent of Mre11p and Sae2p.

Casper AM, Greenwell PW, Tang W, Petes TD.

Genetics. 2009 Oct;183(2):423-39, 1SI-26SI. doi: 10.1534/genetics.109.106385. Epub 2009 Jul 27.

34.

A fine-structure map of spontaneous mitotic crossovers in the yeast Saccharomyces cerevisiae.

Lee PS, Greenwell PW, Dominska M, Gawel M, Hamilton M, Petes TD.

PLoS Genet. 2009 Mar;5(3):e1000410. doi: 10.1371/journal.pgen.1000410. Epub 2009 Mar 13.

35.

Chromosome fragility at GAA tracts in yeast depends on repeat orientation and requires mismatch repair.

Kim HM, Narayanan V, Mieczkowski PA, Petes TD, Krasilnikova MM, Mirkin SM, Lobachev KS.

EMBO J. 2008 Nov 5;27(21):2896-906. doi: 10.1038/emboj.2008.205. Epub 2008 Oct 2.

36.

Double-strand breaks associated with repetitive DNA can reshape the genome.

Argueso JL, Westmoreland J, Mieczkowski PA, Gawel M, Petes TD, Resnick MA.

Proc Natl Acad Sci U S A. 2008 Aug 19;105(33):11845-50. doi: 10.1073/pnas.0804529105. Epub 2008 Aug 13.

37.

Chronic oxidative DNA damage due to DNA repair defects causes chromosomal instability in Saccharomyces cerevisiae.

Degtyareva NP, Chen L, Mieczkowski P, Petes TD, Doetsch PW.

Mol Cell Biol. 2008 Sep;28(17):5432-45. doi: 10.1128/MCB.00307-08. Epub 2008 Jun 30.

38.

Reduced levels of DNA polymerase delta induce chromosome fragile site instability in yeast.

Lemoine FJ, Degtyareva NP, Kokoska RJ, Petes TD.

Mol Cell Biol. 2008 Sep;28(17):5359-68. doi: 10.1128/MCB.02084-07. Epub 2008 Jun 30.

39.

Low levels of DNA polymerase alpha induce mitotic and meiotic instability in the ribosomal DNA gene cluster of Saccharomyces cerevisiae.

Casper AM, Mieczkowski PA, Gawel M, Petes TD.

PLoS Genet. 2008 Jun 27;4(6):e1000105. doi: 10.1371/journal.pgen.1000105.

40.

The histone methylase Set2p and the histone deacetylase Rpd3p repress meiotic recombination at the HIS4 meiotic recombination hotspot in Saccharomyces cerevisiae.

Merker JD, Dominska M, Greenwell PW, Rinella E, Bouck DC, Shibata Y, Strahl BD, Mieczkowski P, Petes TD.

DNA Repair (Amst). 2008 Aug 2;7(8):1298-308. doi: 10.1016/j.dnarep.2008.04.009. Epub 2008 Jun 2.

41.

High rates of "unselected" aneuploidy and chromosome rearrangements in tel1 mec1 haploid yeast strains.

Vernon M, Lobachev K, Petes TD.

Genetics. 2008 May;179(1):237-47. doi: 10.1534/genetics.107.086603. Epub 2008 May 5.

42.

Role of proliferating cell nuclear antigen interactions in the mismatch repair-dependent processing of mitotic and meiotic recombination intermediates in yeast.

Stone JE, Ozbirn RG, Petes TD, Jinks-Robertson S.

Genetics. 2008 Mar;178(3):1221-36. doi: 10.1534/genetics.107.085415. Epub 2008 Feb 3.

44.

Loss of a histone deacetylase dramatically alters the genomic distribution of Spo11p-catalyzed DNA breaks in Saccharomyces cerevisiae.

Mieczkowski PA, Dominska M, Buck MJ, Lieb JD, Petes TD.

Proc Natl Acad Sci U S A. 2007 Mar 6;104(10):3955-60. Epub 2007 Feb 28.

45.

Inverted DNA repeats channel repair of distant double-strand breaks into chromatid fusions and chromosomal rearrangements.

VanHulle K, Lemoine FJ, Narayanan V, Downing B, Hull K, McCullough C, Bellinger M, Lobachev K, Petes TD, Malkova A.

Mol Cell Biol. 2007 Apr;27(7):2601-14. Epub 2007 Jan 22.

46.

Selection and analysis of spontaneous reciprocal mitotic cross-overs in Saccharomyces cerevisiae.

Barbera MA, Petes TD.

Proc Natl Acad Sci U S A. 2006 Aug 22;103(34):12819-24. Epub 2006 Aug 14.

47.

The pattern of gene amplification is determined by the chromosomal location of hairpin-capped breaks.

Narayanan V, Mieczkowski PA, Kim HM, Petes TD, Lobachev KS.

Cell. 2006 Jun 30;125(7):1283-96.

48.

Recombination between retrotransposons as a source of chromosome rearrangements in the yeast Saccharomyces cerevisiae.

Mieczkowski PA, Lemoine FJ, Petes TD.

DNA Repair (Amst). 2006 Sep 8;5(9-10):1010-20. Epub 2006 Jun 23. Review.

PMID:
16798113
50.

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