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Items: 1 to 50 of 121

1.

The D2Refine Platform for the Standardization of Clinical Research Study Data Dictionaries: Usability Study.

Sharma DK, Peterson KJ, Hong N, Jiang G.

JMIR Hum Factors. 2018 Jul 25;5(3):e10205. doi: 10.2196/10205.

2.

Incidental Neuroendocrine Tumor Discovered After Total Pancreatectomy Intended for Islet Autotransplantation: Important Considerations for Surgical Decision-Making.

Serrano OK, Peterson KJ, Mettler T, Wilhelm JJ, Bellin MD, Beilman GJ, Trikudanathan G, Pruett TL, Dunn TB.

Pancreas. 2018 Jul;47(6):778-782. doi: 10.1097/MPA.0000000000001069.

PMID:
29894419
3.

Mining Hierarchies and Similarity Clusters from Value Set Repositories.

Peterson KJ, Jiang G, Brue SM, Shen F, Liu H.

AMIA Annu Symp Proc. 2018 Apr 16;2017:1372-1381. eCollection 2017.

4.

Vascular reconstruction technique of a perforated portal vein during a pediatric total pancreatectomy and islet autotransplant.

Peterson KJ, Serrano OK, Flanagan S, Chinnakotla S.

Am J Transplant. 2018 May 22. doi: 10.1111/ajt.14943. [Epub ahead of print]

PMID:
29790286
5.

Well-Annotated microRNAomes Do Not Evidence Pervasive miRNA Loss.

Tarver JE, Taylor RS, Puttick MN, Lloyd GT, Pett W, Fromm B, Schirrmeister BE, Pisani D, Peterson KJ, Donoghue PCJ.

Genome Biol Evol. 2018 Jun 1;10(6):1457-1470. doi: 10.1093/gbe/evy096.

6.

Big Strides in Cellular MicroRNA Expression.

Halushka MK, Fromm B, Peterson KJ, McCall MN.

Trends Genet. 2018 Mar;34(3):165-167. doi: 10.1016/j.tig.2017.12.015. Epub 2018 Jan 18.

PMID:
29361313
7.

The liver recipient with acute renal dysfunction: A single institution evaluation of the simultaneous liver-kidney transplant candidate.

Yadav K, Serrano OK, Peterson KJ, Pruett TL, Kandaswamy R, Bangdiwala A, Ibrahim H, Israni A, Lake J, Chinnakotla S.

Clin Transplant. 2018 Jan;32(1). doi: 10.1111/ctr.13148. Epub 2017 Nov 24.

PMID:
29105843
8.

Leveraging Terminology Services for Extract-Transform-Load Processes: A User-Centered Approach.

Peterson KJ, Jiang G, Brue SM, Liu H.

AMIA Annu Symp Proc. 2017 Feb 10;2016:1010-1019. eCollection 2016.

9.

Laser propagation measurements in long-scale-length underdense plasmas relevant to magnetized liner inertial fusion.

Harvey-Thompson AJ, Sefkow AB, Wei MS, Nagayama T, Campbell EM, Blue BE, Heeter RF, Koning JM, Peterson KJ, Schmitt A.

Phys Rev E. 2016 Nov;94(5-1):051201. Epub 2016 Nov 2.

PMID:
27967028
10.

The Antagonistic Gene Paralogs Upf3a and Upf3b Govern Nonsense-Mediated RNA Decay.

Shum EY, Jones SH, Shao A, Dumdie J, Krause MD, Chan WK, Lou CH, Espinoza JL, Song HW, Phan MH, Ramaiah M, Huang L, McCarrey JR, Peterson KJ, De Rooij DG, Cook-Andersen H, Wilkinson MF.

Cell. 2016 Apr 7;165(2):382-95. doi: 10.1016/j.cell.2016.02.046. Epub 2016 Mar 31.

11.

Experimental Demonstration of the Stabilizing Effect of Dielectric Coatings on Magnetically Accelerated Imploding Metallic Liners.

Awe TJ, Peterson KJ, Yu EP, McBride RD, Sinars DB, Gomez MR, Jennings CA, Martin MR, Rosenthal SE, Schroen DG, Sefkow AB, Slutz SA, Tomlinson K, Vesey RA.

Phys Rev Lett. 2016 Feb 12;116(6):065001. doi: 10.1103/PhysRevLett.116.065001. Epub 2016 Feb 10.

PMID:
26918996
12.

The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference.

Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D.

Genome Biol Evol. 2016 Jan 5;8(2):330-44. doi: 10.1093/gbe/evv261.

13.

A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome.

Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ.

Annu Rev Genet. 2015;49:213-42. doi: 10.1146/annurev-genet-120213-092023. Epub 2015 Oct 14. Review.

14.

Magnetic field measurements via visible spectroscopy on the Z machine.

Gomez MR, Hansen SB, Peterson KJ, Bliss DE, Carlson AL, Lamppa DC, Schroen DG, Rochau GA.

Rev Sci Instrum. 2014 Nov;85(11):11E609. doi: 10.1063/1.4891304.

PMID:
25430355
15.

Understanding fuel magnetization and mix using secondary nuclear reactions in magneto-inertial fusion.

Schmit PF, Knapp PF, Hansen SB, Gomez MR, Hahn KD, Sinars DB, Peterson KJ, Slutz SA, Sefkow AB, Awe TJ, Harding E, Jennings CA, Chandler GA, Cooper GW, Cuneo ME, Geissel M, Harvey-Thompson AJ, Herrmann MC, Hess MH, Johns O, Lamppa DC, Martin MR, McBride RD, Porter JL, Robertson GK, Rochau GA, Rovang DC, Ruiz CL, Savage ME, Smith IC, Stygar WA, Vesey RA.

Phys Rev Lett. 2014 Oct 10;113(15):155004. Epub 2014 Oct 6.

PMID:
25375715
16.

Experimental demonstration of fusion-relevant conditions in magnetized liner inertial fusion.

Gomez MR, Slutz SA, Sefkow AB, Sinars DB, Hahn KD, Hansen SB, Harding EC, Knapp PF, Schmit PF, Jennings CA, Awe TJ, Geissel M, Rovang DC, Chandler GA, Cooper GW, Cuneo ME, Harvey-Thompson AJ, Herrmann MC, Hess MH, Johns O, Lamppa DC, Martin MR, McBride RD, Peterson KJ, Porter JL, Robertson GK, Rochau GA, Ruiz CL, Savage ME, Smith IC, Stygar WA, Vesey RA.

Phys Rev Lett. 2014 Oct 10;113(15):155003. Epub 2014 Oct 6.

PMID:
25375714
17.

Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles.

Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ.

Evol Dev. 2014 Jul-Aug;16(4):189-96. doi: 10.1111/ede.12081. Epub 2014 May 5.

18.

Electrothermal instability mitigation by using thick dielectric coatings on magnetically imploded conductors.

Peterson KJ, Awe TJ, Yu EP, Sinars DB, Field ES, Cuneo ME, Herrmann MC, Savage M, Schroen D, Tomlinson K, Nakhleh C.

Phys Rev Lett. 2014 Apr 4;112(13):135002. Epub 2014 Apr 2.

PMID:
24745432
19.

Angiotensin 1 - 7 stimulation of platelet recovery.

Rodgers KE, Peterson KJ, Maulhardt HA, diZerega GS.

Expert Opin Investig Drugs. 2014 Apr;23(4):551-9. doi: 10.1517/13543784.2014.891015. Epub 2014 Feb 20. Review.

PMID:
24555825
20.
21.

Normalization and standardization of electronic health records for high-throughput phenotyping: the SHARPn consortium.

Pathak J, Bailey KR, Beebe CE, Bethard S, Carrell DC, Chen PJ, Dligach D, Endle CM, Hart LA, Haug PJ, Huff SM, Kaggal VC, Li D, Liu H, Marchant K, Masanz J, Miller T, Oniki TA, Palmer M, Peterson KJ, Rea S, Savova GK, Stancl CR, Sohn S, Solbrig HR, Suesse DB, Tao C, Taylor DP, Westberg L, Wu S, Zhuo N, Chute CG.

J Am Med Inform Assoc. 2013 Dec;20(e2):e341-8. doi: 10.1136/amiajnl-2013-001939. Epub 2013 Nov 4.

22.

miRNAs: small genes with big potential in metazoan phylogenetics.

Tarver JE, Sperling EA, Nailor A, Heimberg AM, Robinson JM, King BL, Pisani D, Donoghue PC, Peterson KJ.

Mol Biol Evol. 2013 Nov;30(11):2369-82. doi: 10.1093/molbev/mst133. Epub 2013 Aug 2. Review.

PMID:
23913097
23.

MicroRNAs support the monophyly of enteropneust hemichordates.

Peterson KJ, Su YH, Arnone MI, Swalla B, King BL.

J Exp Zool B Mol Dev Evol. 2013 Sep;320(6):368-74. doi: 10.1002/jez.b.22510. Epub 2013 May 23.

PMID:
23703796
24.

Incorporating expert terminology and disease risk factors into consumer health vocabularies.

Seedorff M, Peterson KJ, Nelsen LA, Cocos C, McCormick JB, Chute CG, Pathak J.

Pac Symp Biocomput. 2013:421-32.

25.

Reconstruction of family-level phylogenetic relationships within Demospongiae (Porifera) using nuclear encoded housekeeping genes.

Hill MS, Hill AL, Lopez J, Peterson KJ, Pomponi S, Diaz MC, Thacker RW, Adamska M, Boury-Esnault N, Cárdenas P, Chaves-Fonnegra A, Danka E, De Laine BO, Formica D, Hajdu E, Lobo-Hajdu G, Klontz S, Morrow CC, Patel J, Picton B, Pisani D, Pohlmann D, Redmond NE, Reed J, Richey S, Riesgo A, Rubin E, Russell Z, Rützler K, Sperling EA, di Stefano M, Tarver JE, Collins AG.

PLoS One. 2013;8(1):e50437. doi: 10.1371/journal.pone.0050437. Epub 2013 Jan 23.

26.

Pharmacodynamic stimulation of thrombogenesis by angiotensin (1-7) in recurrent ovarian cancer patients receiving gemcitabine and platinum-based chemotherapy.

Pham H, Schwartz BM, Delmore JE, Reed E, Cruickshank S, Drummond L, Rodgers KE, Peterson KJ, diZerega GS.

Cancer Chemother Pharmacol. 2013 Apr;71(4):965-72. doi: 10.1007/s00280-013-2089-x. Epub 2013 Jan 31.

PMID:
23370663
27.

The identification of microRNAs in calcisponges: independent evolution of microRNAs in basal metazoans.

Robinson JM, Sperling EA, Bergum B, Adamski M, Nichols SA, Adamska M, Peterson KJ.

J Exp Zool B Mol Dev Evol. 2013 Mar;320(2):84-93. doi: 10.1002/jez.b.22485. Epub 2013 Jan 24.

PMID:
23349041
28.

Shared decision making in health care settings: a role for social work.

Peterson KJ.

Soc Work Health Care. 2012;51(10):894-908. doi: 10.1080/00981389.2012.714448.

PMID:
23151285
29.

Penetrating radiography of imploding and stagnating beryllium liners on the Z accelerator.

McBride RD, Slutz SA, Jennings CA, Sinars DB, Cuneo ME, Herrmann MC, Lemke RW, Martin MR, Vesey RA, Peterson KJ, Sefkow AB, Nakhleh C, Blue BE, Killebrew K, Schroen D, Rogers TJ, Laspe A, Lopez MR, Smith IC, Atherton BW, Savage M, Stygar WA, Porter JL.

Phys Rev Lett. 2012 Sep 28;109(13):135004. Epub 2012 Sep 28.

PMID:
23030097
30.

Do miRNAs have a deep evolutionary history?

Tarver JE, Donoghue PC, Peterson KJ.

Bioessays. 2012 Oct;34(10):857-66. doi: 10.1002/bies.201200055. Epub 2012 Jul 30.

PMID:
22847169
31.

Measuring central venous pressure with a triple-lumen catheter.

Peterson KJ.

Crit Care Nurse. 2012 Jun;32(3):62-4. doi: 10.4037/ccn2012554. No abstract available.

32.

CD2AP regulates SUMOylation of CIN85 in podocytes.

Tossidou I, Niedenthal R, Klaus M, Teng B, Worthmann K, King BL, Peterson KJ, Haller H, Schiffer M.

Mol Cell Biol. 2012 Mar;32(6):1068-79. doi: 10.1128/MCB.06106-11. Epub 2011 Dec 27.

33.

The Cambrian conundrum: early divergence and later ecological success in the early history of animals.

Erwin DH, Laflamme M, Tweedt SM, Sperling EA, Pisani D, Peterson KJ.

Science. 2011 Nov 25;334(6059):1091-7. doi: 10.1126/science.1206375.

34.

A molecular palaeobiological hypothesis for the origin of aplacophoran molluscs and their derivation from chiton-like ancestors.

Vinther J, Sperling EA, Briggs DE, Peterson KJ.

Proc Biol Sci. 2012 Apr 7;279(1732):1259-68. doi: 10.1098/rspb.2011.1773. Epub 2011 Oct 5.

35.

Resolving phylogenetic signal from noise when divergence is rapid: a new look at the old problem of echinoderm class relationships.

Pisani D, Feuda R, Peterson KJ, Smith AB.

Mol Phylogenet Evol. 2012 Jan;62(1):27-34. doi: 10.1016/j.ympev.2011.08.028. Epub 2011 Sep 14.

PMID:
21945533
36.

MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda.

Campbell LI, Rota-Stabelli O, Edgecombe GD, Marchioro T, Longhorn SJ, Telford MJ, Philippe H, Rebecchi L, Peterson KJ, Pisani D.

Proc Natl Acad Sci U S A. 2011 Sep 20;108(38):15920-4. doi: 10.1073/pnas.1105499108. Epub 2011 Sep 6.

37.

MicroRNAs support a turtle + lizard clade.

Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ.

Biol Lett. 2012 Feb 23;8(1):104-7. doi: 10.1098/rsbl.2011.0477. Epub 2011 Jul 20.

38.

Molecular paleobiological insights into the origin of the Brachiopoda.

Sperling EA, Pisani D, Peterson KJ.

Evol Dev. 2011 May-Jun;13(3):290-303. doi: 10.1111/j.1525-142X.2011.00480.x.

PMID:
21535467
39.

Episodic radiations in the fly tree of life.

Wiegmann BM, Trautwein MD, Winkler IS, Barr NB, Kim JW, Lambkin C, Bertone MA, Cassel BK, Bayless KM, Heimberg AM, Wheeler BM, Peterson KJ, Pape T, Sinclair BJ, Skevington JH, Blagoderov V, Caravas J, Kutty SN, Schmidt-Ott U, Kampmeier GE, Thompson FC, Grimaldi DA, Beckenbach AT, Courtney GW, Friedrich M, Meier R, Yeates DK.

Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5690-5. doi: 10.1073/pnas.1012675108. Epub 2011 Mar 14.

40.

Acoelomorph flatworms are deuterostomes related to Xenoturbella.

Philippe H, Brinkmann H, Copley RR, Moroz LL, Nakano H, Poustka AJ, Wallberg A, Peterson KJ, Telford MJ.

Nature. 2011 Feb 10;470(7333):255-8. doi: 10.1038/nature09676.

41.

Measurements of magneto-Rayleigh-Taylor instability growth during the implosion of initially solid Al tubes driven by the 20-MA, 100-ns Z facility.

Sinars DB, Slutz SA, Herrmann MC, McBride RD, Cuneo ME, Peterson KJ, Vesey RA, Nakhleh C, Blue BE, Killebrew K, Schroen D, Tomlinson K, Edens AD, Lopez MR, Smith IC, Shores J, Bigman V, Bennett GR, Atherton BW, Savage M, Stygar WA, Leifeste GT, Porter JL.

Phys Rev Lett. 2010 Oct 29;105(18):185001. Epub 2010 Oct 25.

PMID:
21231110
42.

microRNA complements in deuterostomes: origin and evolution of microRNAs.

Campo-Paysaa F, Sémon M, Cameron RA, Peterson KJ, Schubert M.

Evol Dev. 2011 Jan-Feb;13(1):15-27. doi: 10.1111/j.1525-142X.2010.00452.x.

PMID:
21210939
43.

Developmental expression of COE across the Metazoa supports a conserved role in neuronal cell-type specification and mesodermal development.

Jackson DJ, Meyer NP, Seaver E, Pang K, McDougall C, Moy VN, Gordon K, Degnan BM, Martindale MQ, Burke RD, Peterson KJ.

Dev Genes Evol. 2010 Dec;220(7-8):221-34. doi: 10.1007/s00427-010-0343-3. Epub 2010 Nov 11.

44.

Rangeomorphs, Thectardis (Porifera?) and dissolved organic carbon in the Ediacaran oceans.

Sperling EA, Peterson KJ, Laflamme M.

Geobiology. 2011 Jan;9(1):24-33. doi: 10.1111/j.1472-4669.2010.00259.x. Epub 2010 Nov 2.

PMID:
21044251
45.

microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate.

Heimberg AM, Cowper-Sal-lari R, Sémon M, Donoghue PC, Peterson KJ.

Proc Natl Acad Sci U S A. 2010 Nov 9;107(45):19379-83. doi: 10.1073/pnas.1010350107. Epub 2010 Oct 19.

46.

A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata.

Rota-Stabelli O, Campbell L, Brinkmann H, Edgecombe GD, Longhorn SJ, Peterson KJ, Pisani D, Philippe H, Telford MJ.

Proc Biol Sci. 2011 Jan 22;278(1703):298-306. doi: 10.1098/rspb.2010.0590. Epub 2010 Aug 11.

47.

The dynamic genome of Hydra.

Chapman JA, Kirkness EF, Simakov O, Hampson SE, Mitros T, Weinmaier T, Rattei T, Balasubramanian PG, Borman J, Busam D, Disbennett K, Pfannkoch C, Sumin N, Sutton GG, Viswanathan LD, Walenz B, Goodstein DM, Hellsten U, Kawashima T, Prochnik SE, Putnam NH, Shu S, Blumberg B, Dana CE, Gee L, Kibler DF, Law L, Lindgens D, Martinez DE, Peng J, Wigge PA, Bertulat B, Guder C, Nakamura Y, Ozbek S, Watanabe H, Khalturin K, Hemmrich G, Franke A, Augustin R, Fraune S, Hayakawa E, Hayakawa S, Hirose M, Hwang JS, Ikeo K, Nishimiya-Fujisawa C, Ogura A, Takahashi T, Steinmetz PR, Zhang X, Aufschnaiter R, Eder MK, Gorny AK, Salvenmoser W, Heimberg AM, Wheeler BM, Peterson KJ, Böttger A, Tischler P, Wolf A, Gojobori T, Remington KA, Strausberg RL, Venter JC, Technau U, Hobmayer B, Bosch TC, Holstein TW, Fujisawa T, Bode HR, David CN, Rokhsar DS, Steele RE.

Nature. 2010 Mar 25;464(7288):592-6. doi: 10.1038/nature08830. Epub 2010 Mar 14.

48.

Where's the glass? Biomarkers, molecular clocks, and microRNAs suggest a 200-Myr missing Precambrian fossil record of siliceous sponge spicules.

Sperling EA, Robinson JM, Pisani D, Peterson KJ.

Geobiology. 2010 Jan;8(1):24-36. doi: 10.1111/j.1472-4669.2009.00225.x. Epub 2009 Nov 18.

PMID:
19929965
49.

MicroRNAs resolve an apparent conflict between annelid systematics and their fossil record.

Sperling EA, Vinther J, Moy VN, Wheeler BM, Sémon M, Briggs DE, Peterson KJ.

Proc Biol Sci. 2009 Dec 22;276(1677):4315-22. doi: 10.1098/rspb.2009.1340. Epub 2009 Sep 15.

50.

Phylogenetic-signal dissection of nuclear housekeeping genes supports the paraphyly of sponges and the monophyly of Eumetazoa.

Sperling EA, Peterson KJ, Pisani D.

Mol Biol Evol. 2009 Oct;26(10):2261-74. doi: 10.1093/molbev/msp148. Epub 2009 Jul 13.

PMID:
19597161

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