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Dynamic immunoglobulin responses to gut bacteria during inflammatory bowel disease.

Rengarajan S, Vivio EE, Parkes M, Peterson DA, Roberson EDO, Newberry RD, Ciorba MA, Hsieh CS.

Gut Microbes. 2019 Jun 16:1-16. doi: 10.1080/19490976.2019.1626683. [Epub ahead of print]


Investigation of pre-existing reactivity to biotherapeutics can uncover potential immunogenic epitopes and predict immunogenicity risk.

Bivi N, Moore T, Rodgers G, Denning H, Shockley T, Swearingen CA, Gelfanova V, Calderon B, Peterson DA, Hodsdon ME, Siegel RW, Higgs RE, Konrad RJ.

MAbs. 2019 Jul;11(5):861-869. doi: 10.1080/19420862.2019.1612699. Epub 2019 May 17.


Mitigating gender bias in student evaluations of teaching.

Peterson DAM, Biederman LA, Andersen D, Ditonto TM, Roe K.

PLoS One. 2019 May 15;14(5):e0216241. doi: 10.1371/journal.pone.0216241. eCollection 2019.


Reduced presynaptic vesicle stores mediate cellular and network plasticity defects in an early-stage mouse model of Alzheimer's disease.

Chakroborty S, Hill ES, Christian DT, Helfrich R, Riley S, Schneider C, Kapecki N, Mustaly-Kalimi S, Seiler FA, Peterson DA, West AR, Vertel BM, Frost WN, Stutzmann GE.

Mol Neurodegener. 2019 Jan 22;14(1):7. doi: 10.1186/s13024-019-0307-7.


Antibiotics induce sustained dysregulation of intestinal T cell immunity by perturbing macrophage homeostasis.

Scott NA, Andrusaite A, Andersen P, Lawson M, Alcon-Giner C, Leclaire C, Caim S, Le Gall G, Shaw T, Connolly JPR, Roe AJ, Wessel H, Bravo-Blas A, Thomson CA, Kästele V, Wang P, Peterson DA, Bancroft A, Li X, Grencis R, Mowat AM, Hall LJ, Travis MA, Milling SWF, Mann ER.

Sci Transl Med. 2018 Oct 24;10(464). pii: eaao4755. doi: 10.1126/scitranslmed.aao4755.


Experimental evaluation of the importance of colonization history in early-life gut microbiota assembly.

Martínez I, Maldonado-Gomez MX, Gomes-Neto JC, Kittana H, Ding H, Schmaltz R, Joglekar P, Cardona RJ, Marsteller NL, Kembel SW, Benson AK, Peterson DA, Ramer-Tait AE, Walter J.

Elife. 2018 Sep 18;7. pii: e36521. doi: 10.7554/eLife.36521.


IgA regulates the composition and metabolic function of gut microbiota by promoting symbiosis between bacteria.

Nakajima A, Vogelzang A, Maruya M, Miyajima M, Murata M, Son A, Kuwahara T, Tsuruyama T, Yamada S, Matsuura M, Nakase H, Peterson DA, Fagarasan S, Suzuki K.

J Exp Med. 2018 Aug 6;215(8):2019-2034. doi: 10.1084/jem.20180427. Epub 2018 Jul 24.


Does a plant-eating insect's diet govern the evolution of insecticide resistance? Comparative tests of the pre-adaptation hypothesis.

Hardy NB, Peterson DA, Ross L, Rosenheim JA.

Evol Appl. 2017 Dec 18;11(5):739-747. doi: 10.1111/eva.12579. eCollection 2018 Jun.


A Subset of Polysaccharide Capsules in the Human Symbiont Bacteroides thetaiotaomicron Promote Increased Competitive Fitness in the Mouse Gut.

Porter NT, Canales P, Peterson DA, Martens EC.

Cell Host Microbe. 2017 Oct 11;22(4):494-506.e8. doi: 10.1016/j.chom.2017.08.020. Epub 2017 Sep 28.


Regulation of autoimmune myocarditis by host responses to the microbiome.

Barin JG, Talor MV, Diny NL, Ong S, Schaub JA, Gebremariam E, Bedja D, Chen G, Choi HS, Hou X, Wu L, Cardamone AB, Peterson DA, Rose NR, Čiháková D.

Exp Mol Pathol. 2017 Oct;103(2):141-152. doi: 10.1016/j.yexmp.2017.08.003. Epub 2017 Aug 16.


Helicobacter species are potent drivers of colonic T cell responses in homeostasis and inflammation.

Chai JN, Peng Y, Rengarajan S, Solomon BD, Ai TL, Shen Z, Perry JSA, Knoop KA, Tanoue T, Narushima S, Honda K, Elson CO, Newberry RD, Stappenbeck TS, Kau AL, Peterson DA, Fox JG, Hsieh CS.

Sci Immunol. 2017 Jul 21;2(13). pii: eaal5068. doi: 10.1126/sciimmunol.aal5068.


Gene expression plasticity across hosts of an invasive scale insect species.

Christodoulides N, Van Dam AR, Peterson DA, Frandsen RJN, Mortensen UH, Petersen B, Rasmussen S, Normark BB, Hardy NB.

PLoS One. 2017 May 4;12(5):e0176956. doi: 10.1371/journal.pone.0176956. eCollection 2017.


Experimental Evaluation of Host Adaptation of Lactobacillus reuteri to Different Vertebrate Species.

Duar RM, Frese SA, Lin XB, Fernando SC, Burkey TE, Tasseva G, Peterson DA, Blom J, Wenzel CQ, Szymanski CM, Walter J.

Appl Environ Microbiol. 2017 May 31;83(12). pii: e00132-17. doi: 10.1128/AEM.00132-17. Print 2017 Jun 15.


A Dynamic Circuit Hypothesis for the Pathogenesis of Blepharospasm.

Peterson DA, Sejnowski TJ.

Front Comput Neurosci. 2017 Mar 7;11:11. doi: 10.3389/fncom.2017.00011. eCollection 2017.


Changes in the Gut Microbiota After Early Administration of Oral Synbiotics to Young Infants in India.

Chandel DS, Perez-Munoz ME, Yu F, Boissy R, Satpathy R, Misra PR, Sharma N, Chaudhry R, Parida S, Peterson DA, Gewolb IH, Panigrahi P.

J Pediatr Gastroenterol Nutr. 2017 Aug;65(2):218-224. doi: 10.1097/MPG.0000000000001522.


Whole-brain 3D mapping of human neural transplant innervation.

Doerr J, Schwarz MK, Wiedermann D, Leinhaas A, Jakobs A, Schloen F, Schwarz I, Diedenhofen M, Braun NC, Koch P, Peterson DA, Kubitscheck U, Hoehn M, Brüstle O.

Nat Commun. 2017 Jan 19;8:14162. doi: 10.1038/ncomms14162.


Micro- and Macroevolutionary Trade-Offs in Plant-Feeding Insects.

Peterson DA, Hardy NB, Normark BB.

Am Nat. 2016 Dec;188(6):640-650. Epub 2016 Sep 16.


Corrigendum: The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota.

Lagkouvardos I, Pukall R, Abt B, Foesel BU, Meier-Kolthoff JP, Kumar N, Bresciani A, Martínez I, Just S, Ziegler C, Brugiroux S, Garzetti D, Wenning M, Bui TP, Wang J, Hugenholtz F, Plugge CM, Peterson DA, Hornef MW, Baines JF, Smidt H, Walter J, Kristiansen K, Nielsen HB, Haller D, Overmann J, Stecher B, Clavel T.

Nat Microbiol. 2016 Oct 17;1(11):16219. doi: 10.1038/nmicrobiol.2016.219. No abstract available.


Objective, computerized video-based rating of blepharospasm severity.

Peterson DA, Littlewort GC, Bartlett MS, Macerollo A, Perlmutter JS, Jinnah HA, Hallett M, Sejnowski TJ.

Neurology. 2016 Nov 15;87(20):2146-2153. Epub 2016 Oct 21.


A Clinically Relevant Closed-Head Model of Single and Repeat Concussive Injury in the Adult Rat Using a Controlled Cortical Impact Device.

Jamnia N, Urban JH, Stutzmann GE, Chiren SG, Reisenbigler E, Marr R, Peterson DA, Kozlowski DA.

J Neurotrauma. 2017 Apr 1;34(7):1351-1363. doi: 10.1089/neu.2016.4517. Epub 2016 Dec 2.


The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota.

Lagkouvardos I, Pukall R, Abt B, Foesel BU, Meier-Kolthoff JP, Kumar N, Bresciani A, Martínez I, Just S, Ziegler C, Brugiroux S, Garzetti D, Wenning M, Bui TP, Wang J, Hugenholtz F, Plugge CM, Peterson DA, Hornef MW, Baines JF, Smidt H, Walter J, Kristiansen K, Nielsen HB, Haller D, Overmann J, Stecher B, Clavel T.

Nat Microbiol. 2016 Aug 8;1(10):16131. doi: 10.1038/nmicrobiol.2016.131. Erratum in: Nat Microbiol. 2016 Oct 17;1(11):16219.


Nonadaptive radiation: Pervasive diet specialization by drift in scale insects?

Hardy NB, Peterson DA, Normark BB.

Evolution. 2016 Oct;70(10):2421-2428. doi: 10.1111/evo.13036. Epub 2016 Sep 1.


Modulatory Effects of Gut Microbiota on the Central Nervous System: How Gut Could Play a Role in Neuropsychiatric Health and Diseases.

Yarandi SS, Peterson DA, Treisman GJ, Moran TH, Pasricha PJ.

J Neurogastroenterol Motil. 2016 Apr 30;22(2):201-12. doi: 10.5056/jnm15146. Review.


Detection and Phenotypic Characterization of Adult Neurogenesis.

Kuhn HG, Eisch AJ, Spalding K, Peterson DA.

Cold Spring Harb Perspect Biol. 2016 Mar 1;8(3):a025981. doi: 10.1101/cshperspect.a025981. Review.


Scale insect host ranges are broader in the tropics.

Hardy NB, Peterson DA, Normark BB.

Biol Lett. 2015 Dec;11(12):20150924. doi: 10.1098/rsbl.2015.0924.


Identification and Phylogeny of the First T Cell Epitope Identified from a Human Gut Bacteroides Species.

Perez-Muñoz ME, Joglekar P, Shen YJ, Chang KY, Peterson DA.

PLoS One. 2015 Dec 4;10(12):e0144382. doi: 10.1371/journal.pone.0144382. eCollection 2015. Erratum in: PLoS One. 2016;11(1):e0146630. Shen, Yi-Ji [corrected to Shen, Yi-Ju].


Characterization of the ecological role of genes mediating acid resistance in Lactobacillus reuteri during colonization of the gastrointestinal tract.

Krumbeck JA, Marsteller NL, Frese SA, Peterson DA, Ramer-Tait AE, Hutkins RW, Walter J.

Environ Microbiol. 2016 Jul;18(7):2172-84. doi: 10.1111/1462-2920.13108. Epub 2015 Dec 21.


Cheating. Who Does It Really Hurt?

Peterson DA.

J Am Coll Dent. 2015 Winter;82(1):30-3.


Phylogenetic analysis reveals positive correlations between adaptations to diverse hosts in a group of pathogen-like herbivores.

Peterson DA, Hardy NB, Morse GE, Stocks IC, Okusu A, Normark BB.

Evolution. 2015 Oct;69(10). doi: 10.1111/evo.12772. Epub 2015 Sep 28.


Versatility of using major histocompatibility complex class II dextramers for derivation and characterization of antigen-specific, autoreactive T cell hybridomas.

Krishnan B, Massilamany C, Basavalingappa RH, Rajasekaran RA, Kuszynski C, Switzer B, Peterson DA, Reddy J.

J Immunol Methods. 2015 Nov;426:86-94. doi: 10.1016/j.jim.2015.08.007. Epub 2015 Aug 9.


Pluripotent stem cell-derived radial glia-like cells as stable intermediate for efficient generation of human oligodendrocytes.

Gorris R, Fischer J, Erwes KL, Kesavan J, Peterson DA, Alexander M, Nöthen MM, Peitz M, Quandel T, Karus M, Brüstle O.

Glia. 2015 Dec;63(12):2152-67. doi: 10.1002/glia.22882. Epub 2015 Jun 30.


The microbiome and autoimmune disease: Report from a Noel R. Rose Colloquium.

Barin JG, Tobias LD, Peterson DA.

Clin Immunol. 2015 Aug;159(2):183-8. doi: 10.1016/j.clim.2015.05.009. Epub 2015 May 20.


Characterizing the interactions between a naturally primed immunoglobulin A and its conserved Bacteroides thetaiotaomicron species-specific epitope in gnotobiotic mice.

Peterson DA, Planer JD, Guruge JL, Xue L, Downey-Virgin W, Goodman AL, Seedorf H, Gordon JI.

J Biol Chem. 2015 May 15;290(20):12630-49. doi: 10.1074/jbc.M114.633800. Epub 2015 Mar 20.


The evolution of life cycle complexity in aphids: Ecological optimization or historical constraint?

Hardy NB, Peterson DA, von Dohlen CD.

Evolution. 2015 Jun;69(6):1423-1432. doi: 10.1111/evo.12643. Epub 2015 Jun 15.


Host genetics and diet, but not immunoglobulin A expression, converge to shape compositional features of the gut microbiome in an advanced intercross population of mice.

Leamy LJ, Kelly SA, Nietfeldt J, Legge RM, Ma F, Hua K, Sinha R, Peterson DA, Walter J, Benson AK, Pomp D.

Genome Biol. 2014;15(12):552.


Intestinal microbiota-kidney cross talk in acute kidney injury and chronic kidney disease.

Noel S, Martina-Lingua MN, Bandapalle S, Pluznick J, Hamad AR, Peterson DA, Rabb H.

Nephron Clin Pract. 2014;127(1-4):139-43. doi: 10.1159/000363209. Epub 2014 Sep 24. Review.


Spatial distribution and cellular composition of adult brain proliferative zones in the teleost, Gymnotus omarorum.

Olivera-Pasilio V, Peterson DA, Castelló ME.

Front Neuroanat. 2014 Sep 8;8:88. doi: 10.3389/fnana.2014.00088. eCollection 2014.


Music mnemonics aid Verbal Memory and Induce Learning - Related Brain Plasticity in Multiple Sclerosis.

Thaut MH, Peterson DA, McIntosh GC, Hoemberg V.

Front Hum Neurosci. 2014 Jun 13;8:395. doi: 10.3389/fnhum.2014.00395. eCollection 2014.


Current automated 3D cell detection methods are not a suitable replacement for manual stereologic cell counting.

Schmitz C, Eastwood BS, Tappan SJ, Glaser JR, Peterson DA, Hof PR.

Front Neuroanat. 2014 May 7;8:27. doi: 10.3389/fnana.2014.00027. eCollection 2014.


Prospects for engineering neurons from local neocortical cell populations as cell-mediated therapy for neurological disorders.

Bazarek S, Peterson DA.

J Comp Neurol. 2014 Aug 15;522(12):2857-76. doi: 10.1002/cne.23618. Epub 2014 May 13. Review.


Local adaptation limits lifetime reproductive success of dispersers in a wild salmon metapopulation.

Peterson DA, Hilborn R, Hauser L.

Nat Commun. 2014 Apr 17;5:3696. doi: 10.1038/ncomms4696.


Discordance between changes in the gut microbiota and pathogenicity in a mouse model of spontaneous colitis.

Perez-Muñoz ME, Bergstrom K, Peng V, Schmaltz R, Jimenez-Cardona R, Marsteller N, McGee S, Clavel T, Ley R, Fu J, Xia L, Peterson DA.

Gut Microbes. 2014 May-Jun;5(3):286-95. doi: 10.4161/gmic.28622. Epub 2014 Mar 24.


Toward a semi-self-paced EEG brain computer interface: decoding initiation state from non-initiation state in dedicated time slots.

Yang L, Leung H, Peterson DA, Sejnowski TJ, Poizner H.

PLoS One. 2014 Feb 21;9(2):e88915. doi: 10.1371/journal.pone.0088915. eCollection 2014.


Genomic analysis of the differential response to experimental infection with porcine circovirus 2b.

McKnite AM, Bundy JW, Moural TW, Tart JK, Johnson TP, Jobman EE, Barnes SY, Qiu JK, Peterson DA, Harris SP, Rothschild MF, Galeota JA, Johnson RK, Kachman SD, Ciobanu DC.

Anim Genet. 2014 Apr;45(2):205-14. doi: 10.1111/age.12125. Epub 2014 Jan 21.


Molecular characterization of host-specific biofilm formation in a vertebrate gut symbiont.

Frese SA, Mackenzie DA, Peterson DA, Schmaltz R, Fangman T, Zhou Y, Zhang C, Benson AK, Cody LA, Mulholland F, Juge N, Walter J.

PLoS Genet. 2013;9(12):e1004057. doi: 10.1371/journal.pgen.1004057. Epub 2013 Dec 26.


Innate and adaptive immunity interact to quench microbiome flagellar motility in the gut.

Cullender TC, Chassaing B, Janzon A, Kumar K, Muller CE, Werner JJ, Angenent LT, Bell ME, Hay AG, Peterson DA, Walter J, Vijay-Kumar M, Gewirtz AT, Ley RE.

Cell Host Microbe. 2013 Nov 13;14(5):571-81. doi: 10.1016/j.chom.2013.10.009.


Rating scales for musician's dystonia: the state of the art.

Peterson DA, Berque P, Jabusch HC, Altenmüller E, Frucht SJ.

Neurology. 2013 Aug 6;81(6):589-98. doi: 10.1212/WNL.0b013e31829e6f72. Epub 2013 Jul 24. Review.


Human mesenchymal stem cell grafts enhance normal and impaired wound healing by recruiting existing endogenous tissue stem/progenitor cells.

Shin L, Peterson DA.

Stem Cells Transl Med. 2013 Jan;2(1):33-42. doi: 10.5966/sctm.2012-0041. Epub 2012 Dec 21.


Impaired therapeutic capacity of autologous stem cells in a model of type 2 diabetes.

Shin L, Peterson DA.

Stem Cells Transl Med. 2012 Feb;1(2):125-35. doi: 10.5966/sctm.2012-0031. Epub 2012 Jan 26.


Gut microbiome composition is linked to whole grain-induced immunological improvements.

Martínez I, Lattimer JM, Hubach KL, Case JA, Yang J, Weber CG, Louk JA, Rose DJ, Kyureghian G, Peterson DA, Haub MD, Walter J.

ISME J. 2013 Feb;7(2):269-80. doi: 10.1038/ismej.2012.104. Epub 2012 Oct 4.

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