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Items: 32

1.

Optical mapping reveals a higher level of genomic architecture of chained fusions in cancer.

Chan EKF, Cameron DL, Petersen DC, Lyons RJ, Baldi BF, Papenfuss AT, Thomas DM, Hayes VM.

Genome Res. 2018 May;28(5):726-738. doi: 10.1101/gr.227975.117. Epub 2018 Apr 4.

2.

Altered mitochondrial genome content signals worse pathology and prognosis in prostate cancer.

Kalsbeek AMF, Chan EKF, Grogan J, Petersen DC, Jaratlerdsiri W, Gupta R, Lyons RJ, Haynes AM, Horvath LG, Kench JG, Stricker PD, Hayes VM.

Prostate. 2018 Jan;78(1):25-31. doi: 10.1002/pros.23440. Epub 2017 Nov 14.

PMID:
29134670
3.

Next generation mapping reveals novel large genomic rearrangements in prostate cancer.

Jaratlerdsiri W, Chan EKF, Petersen DC, Yang C, Croucher PI, Bornman MSR, Sheth P, Hayes VM.

Oncotarget. 2017 Apr 4;8(14):23588-23602. doi: 10.18632/oncotarget.15802.

4.

Mutational load of the mitochondrial genome predicts pathological features and biochemical recurrence in prostate cancer.

Kalsbeek AM, Chan EF, Grogan J, Petersen DC, Jaratlerdsiri W, Gupta R, Lyons RJ, Haynes AM, Horvath LG, Kench JG, Stricker PD, Hayes VM.

Aging (Albany NY). 2016 Oct 5;8(11):2702-2712. doi: 10.18632/aging.101044.

5.

Spectrum of mitochondrial genomic variation and associated clinical presentation of prostate cancer in South African men.

McCrow JP, Petersen DC, Louw M, Chan EK, Harmeyer K, Vecchiarelli S, Lyons RJ, Bornman MS, Hayes VM.

Prostate. 2016 Mar;76(4):349-58. doi: 10.1002/pros.23126. Epub 2015 Dec 10.

6.

Revised timeline and distribution of the earliest diverged human maternal lineages in southern Africa.

Chan EK, Hardie RA, Petersen DC, Beeson K, Bornman RM, Smith AB, Hayes VM.

PLoS One. 2015 Mar 25;10(3):e0121223. doi: 10.1371/journal.pone.0121223. eCollection 2015.

7.

Clinical presentation of prostate cancer in black South Africans.

Tindall EA, Monare LR, Petersen DC, van Zyl S, Hardie RA, Segone AM, Venter PA, Bornman MS, Hayes VM.

Prostate. 2014 Jun;74(8):880-91. doi: 10.1002/pros.22806. Epub 2014 Apr 9.

8.

Complex patterns of genomic admixture within southern Africa.

Petersen DC, Libiger O, Tindall EA, Hardie RA, Hannick LI, Glashoff RH, Mukerji M; Indian Genome Variation Consortium, Fernandez P, Haacke W, Schork NJ, Hayes VM.

PLoS Genet. 2013;9(3):e1003309. doi: 10.1371/journal.pgen.1003309. Epub 2013 Mar 14.

9.

Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil).

Miller W, Hayes VM, Ratan A, Petersen DC, Wittekindt NE, Miller J, Walenz B, Knight J, Qi J, Zhao F, Wang Q, Bedoya-Reina OC, Katiyar N, Tomsho LP, Kasson LM, Hardie RA, Woodbridge P, Tindall EA, Bertelsen MF, Dixon D, Pyecroft S, Helgen KM, Lesk AM, Pringle TH, Patterson N, Zhang Y, Kreiss A, Woods GM, Jones ME, Schuster SC.

Proc Natl Acad Sci U S A. 2011 Jul 26;108(30):12348-53. doi: 10.1073/pnas.1102838108. Epub 2011 Jun 27. Erratum in: Proc Natl Acad Sci U S A. 2012 Nov 6;109(45):18625.

10.

Interpretation of custom designed Illumina genotype cluster plots for targeted association studies and next-generation sequence validation.

Tindall EA, Petersen DC, Nikolaysen S, Miller W, Schuster SC, Hayes VM.

BMC Res Notes. 2010 Feb 22;3:39. doi: 10.1186/1756-0500-3-39.

11.

Complete Khoisan and Bantu genomes from southern Africa.

Schuster SC, Miller W, Ratan A, Tomsho LP, Giardine B, Kasson LR, Harris RS, Petersen DC, Zhao F, Qi J, Alkan C, Kidd JM, Sun Y, Drautz DI, Bouffard P, Muzny DM, Reid JG, Nazareth LV, Wang Q, Burhans R, Riemer C, Wittekindt NE, Moorjani P, Tindall EA, Danko CG, Teo WS, Buboltz AM, Zhang Z, Ma Q, Oosthuysen A, Steenkamp AW, Oostuisen H, Venter P, Gajewski J, Zhang Y, Pugh BF, Makova KD, Nekrutenko A, Mardis ER, Patterson N, Pringle TH, Chiaromonte F, Mullikin JC, Eichler EE, Hardison RC, Gibbs RA, Harkins TT, Hayes VM.

Nature. 2010 Feb 18;463(7283):943-7. doi: 10.1038/nature08795.

12.

Inflammatory genetic markers of prostate cancer risk.

Tindall EA, Hayes VM, Petersen DC.

Cancers (Basel). 2010 Jun 8;2(2):1198-220. doi: 10.3390/cancers2021198.

13.

Genetic structure of a unique admixed population: implications for medical research.

Patterson N, Petersen DC, van der Ross RE, Sudoyo H, Glashoff RH, Marzuki S, Reich D, Hayes VM.

Hum Mol Genet. 2010 Feb 1;19(3):411-9. doi: 10.1093/hmg/ddp505. Epub 2009 Nov 5.

PMID:
19892779
14.

Correlation between HIV-1 seropositivity and prevalence of a gamma-secretase polymorphism in two distinct ethnic populations.

van Loo KM, van Schijndel JE, van Zweeden M, van Manen D, Trip MD, Petersen DC, Schuitemaker H, Hayes VM, Martens GJ.

J Med Virol. 2009 Nov;81(11):1847-51. doi: 10.1002/jmv.21601.

PMID:
19774691
15.

Assessing high-resolution melt curve analysis for accurate detection of gene variants in complex DNA fragments.

Tindall EA, Petersen DC, Woodbridge P, Schipany K, Hayes VM.

Hum Mutat. 2009 Jun;30(6):876-83. doi: 10.1002/humu.20919.

PMID:
19280649
16.

No association between common chemokine and chemokine receptor gene variants and prostate cancer risk.

Petersen DC, Severi G, Hoang HN, Padilla EJ, Southey MC, English DR, Hopper JL, Giles GG, Hayes VM.

Cancer Epidemiol Biomarkers Prev. 2008 Dec;17(12):3615-7. doi: 10.1158/1055-9965.EPI-08-0896.

17.

Novel Plexor SNP genotyping technology: comparisons with TaqMan and homogenous MassEXTEND MALDI-TOF mass spectrometry.

Tindall EA, Speight G, Petersen DC, Padilla EJ, Hayes VM.

Hum Mutat. 2007 Sep;28(9):922-7.

PMID:
17458878
18.

Optical coherence microscopy for the evaluation of a tissue-engineered artificial cornea.

Orwin EJ, Lee S, Raub C, Icenogle T, Arman M, Cho A, Lovec R, Malone A, Haskell RC, Hoeling BM, Petersen DC.

Conf Proc IEEE Eng Med Biol Soc. 2004;2:1218-21.

PMID:
17271907
19.

Visualizing early frog development with motion-sensitive 3-D optical coherence microscopy.

Haskell RC, Williams ME, Petersen DC, Hoeling BM, Schile AJ, Pennington JD, Seetin MG, Castelaz JM, Fraser SE, Papan C, Ren H, de Boer JF, Chen Z.

Conf Proc IEEE Eng Med Biol Soc. 2004;7:5296-9.

PMID:
17271536
20.

Role of beat noise in limiting the sensitivity of optical coherence tomography.

Haskell RC, Liao D, Pivonka AE, Bell TL, Haberle BR, Hoeling BM, Petersen DC.

J Opt Soc Am A Opt Image Sci Vis. 2006 Nov;23(11):2747-55.

PMID:
17047700
21.

Effects of human TRIM5alpha polymorphisms on antiretroviral function and susceptibility to human immunodeficiency virus infection.

Javanbakht H, An P, Gold B, Petersen DC, O'Huigin C, Nelson GW, O'Brien SJ, Kirk GD, Detels R, Buchbinder S, Donfield S, Shulenin S, Song B, Perron MJ, Stremlau M, Sodroski J, Dean M, Winkler C.

Virology. 2006 Oct 10;354(1):15-27. Epub 2006 Aug 2.

22.

Risk for HIV-1 infection associated with a common CXCL12 (SDF1) polymorphism and CXCR4 variation in an African population.

Petersen DC, Glashoff RH, Shrestha S, Bergeron J, Laten A, Gold B, van Rensburg EJ, Dean M, Hayes VM.

J Acquir Immune Defic Syndr. 2005 Dec 15;40(5):521-6.

23.

Functional analysis of novel SLC11A1 (NRAMP1) promoter variants in susceptibility to HIV-1.

Donninger H, Cashmore TJ, Scriba T, Petersen DC, Janse van Rensburg E, Hayes VM.

J Med Genet. 2004 Apr;41(4):e49. No abstract available.

24.

African-based CCR5 single-nucleotide polymorphism associated with HIV-1 disease progression.

Hayes VM, Petersen DC, Scriba TJ, Zeier M, Grimwood A, Janse van Rensburg E.

AIDS. 2002 Nov 8;16(16):2229-31. No abstract available.

PMID:
12409748
25.

Novel mutations and SNPs identified in CCR2 using a new comprehensive denaturing gradient gel electrophoresis assay.

Petersen DC, Laten A, Zeier MD, Grimwood A, Rensburg EJ, Hayes VM.

Hum Mutat. 2002 Oct;20(4):253-9.

PMID:
12325020
26.

Novel mutations identified using a comprehensive CCR5-denaturing gradient gel electrophoresis assay.

Petersen DC, Kotze MJ, Zeier MD, Grimwood A, Pretorius D, Vardas E, van Rensburg EJ, Hayes VM.

AIDS. 2001 Jan 26;15(2):171-7.

PMID:
11216924
27.

Optical coherence microscopy. A technology for rapid, in vivo, non-destructive visualization of plants and plant cells.

Hettinger JW, de la Peña Mattozzi M, Myers WR, Williams ME, Reeves A, Parsons RL, Haskell RC, Petersen DC, Wang R, Medford JI.

Plant Physiol. 2000 May;123(1):3-16.

28.

Light-scattering technique for the study of dynamic thickness fluctuations in thin liquid films.

Haskell RC, Petersen DC, Johnson MW.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1993 Jan;47(1):439-451. No abstract available.

PMID:
9960020
29.

Water permeation through the lipid bilayer membrane. Test of the liquid hydrocarbon model.

Petersen DC.

Biochim Biophys Acta. 1980 Aug 14;600(3):666-77.

PMID:
7407138
30.

Formation of planar bilayer membranes from lipid monolayers. A critique.

White SH, Petersen DC, Simon S, Yafuso M.

Biophys J. 1976 May;16(5):481-9.

31.

The electric dipole moment of rhodopsin solubilized in Triton X-100.

Petersen DC, Cone RA.

Biophys J. 1975 Dec;15(12):1181-200.

32.

Ineffectiveness of pyridoxine (vitamin B6) in the treatment of epilepsy.

LIVINGSTON S, JENG MH, PETERSEN DC.

Pediatrics. 1955 Aug;16(2):250-1. No abstract available.

PMID:
13245328

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