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Items: 1 to 50 of 144

1.

Genome-wide association study of eosinophilic granulomatosis with polyangiitis reveals genomic loci stratified by ANCA status.

Lyons PA, Peters JE, Alberici F, Liley J, Coulson RMR, Astle W, Baldini C, Bonatti F, Cid MC, Elding H, Emmi G, Epplen J, Guillevin L, Jayne DRW, Jiang T, Gunnarsson I, Lamprecht P, Leslie S, Little MA, Martorana D, Moosig F, Neumann T, Ohlsson S, Quickert S, Ramirez GA, Rewerska B, Schett G, Sinico RA, Szczeklik W, Tesar V, Vukcevic D; European Vasculitis Genetics Consortium, Terrier B, Watts RA, Vaglio A, Holle JU, Wallace C, Smith KGC.

Nat Commun. 2019 Nov 12;10(1):5120. doi: 10.1038/s41467-019-12515-9.

2.

Targeted transposition with Tn7 elements: safe sites, mobile plasmids, CRISPR/Cas and beyond.

Peters JE.

Mol Microbiol. 2019 Sep 10. doi: 10.1111/mmi.14383. [Epub ahead of print] Review.

PMID:
31502713
3.

CRISPR-Cas in mobile genetic elements: counter-defence and beyond.

Faure G, Shmakov SA, Yan WX, Cheng DR, Scott DA, Peters JE, Makarova KS, Koonin EV.

Nat Rev Microbiol. 2019 Aug;17(8):513-525. doi: 10.1038/s41579-019-0204-7.

PMID:
31165781
4.

Interleukin-6 Receptor Signaling and Abdominal Aortic Aneurysm Growth Rates.

Paige E, Clément M, Lareyre F, Sweeting M, Raffort J, Grenier C, Finigan A, Harrison J, Peters JE, Sun BB, Butterworth AS, Harrison SC, Bown MJ, Lindholt JS, Badger SA, Kullo IJ, Powell J, Norman PE, Scott DJA, Bailey MA, Rose-John S, Danesh J, Freitag DF, Paul DS, Mallat Z.

Circ Genom Precis Med. 2019 Feb;12(2):e002413. doi: 10.1161/CIRCGEN.118.002413.

5.

Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi.

Peters JM, Koo BM, Patino R, Heussler GE, Hearne CC, Qu J, Inclan YF, Hawkins JS, Lu CHS, Silvis MR, Harden MM, Osadnik H, Peters JE, Engel JN, Dutton RJ, Grossman AD, Gross CA, Rosenberg OS.

Nat Microbiol. 2019 Feb;4(2):244-250. doi: 10.1038/s41564-018-0327-z. Epub 2019 Jan 7.

6.

A phage-based assay for the rapid, quantitative, and single CFU visualization of E. coli (ECOR #13) in drinking water.

Hinkley TC, Singh S, Garing S, Le Ny AM, Nichols KP, Peters JE, Talbert JN, Nugen SR.

Sci Rep. 2018 Oct 2;8(1):14630. doi: 10.1038/s41598-018-33097-4.

7.

Reduced monocyte and macrophage TNFSF15/TL1A expression is associated with susceptibility to inflammatory bowel disease.

Richard AC, Peters JE, Savinykh N, Lee JC, Hawley ET, Meylan F, Siegel RM, Lyons PA, Smith KGC.

PLoS Genet. 2018 Sep 10;14(9):e1007458. doi: 10.1371/journal.pgen.1007458. eCollection 2018 Sep.

8.

Reporter bacteriophage T7NLC utilizes a novel NanoLuc::CBM fusion for the ultrasensitive detection of Escherichia coli in water.

Hinkley TC, Garing S, Singh S, Le Ny AM, Nichols KP, Peters JE, Talbert JN, Nugen SR.

Analyst. 2018 Aug 20;143(17):4074-4082. doi: 10.1039/c8an00781k.

PMID:
30069563
9.

Association of LPA Variants With Risk of Coronary Disease and the Implications for Lipoprotein(a)-Lowering Therapies: A Mendelian Randomization Analysis.

Burgess S, Ference BA, Staley JR, Freitag DF, Mason AM, Nielsen SF, Willeit P, Young R, Surendran P, Karthikeyan S, Bolton TR, Peters JE, Kamstrup PR, Tybjærg-Hansen A, Benn M, Langsted A, Schnohr P, Vedel-Krogh S, Kobylecki CJ, Ford I, Packard C, Trompet S, Jukema JW, Sattar N, Di Angelantonio E, Saleheen D, Howson JMM, Nordestgaard BG, Butterworth AS, Danesh J; European Prospective Investigation Into Cancer and Nutrition–Cardiovascular Disease (EPIC-CVD) Consortium.

JAMA Cardiol. 2018 Jul 1;3(7):619-627. doi: 10.1001/jamacardio.2018.1470.

10.

Genomic atlas of the human plasma proteome.

Sun BB, Maranville JC, Peters JE, Stacey D, Staley JR, Blackshaw J, Burgess S, Jiang T, Paige E, Surendran P, Oliver-Williams C, Kamat MA, Prins BP, Wilcox SK, Zimmerman ES, Chi A, Bansal N, Spain SL, Wood AM, Morrell NW, Bradley JR, Janjic N, Roberts DJ, Ouwehand WH, Todd JA, Soranzo N, Suhre K, Paul DS, Fox CS, Plenge RM, Danesh J, Runz H, Butterworth AS.

Nature. 2018 Jun;558(7708):73-79. doi: 10.1038/s41586-018-0175-2. Epub 2018 Jun 6.

11.
12.

Recruitment of CRISPR-Cas systems by Tn7-like transposons.

Peters JE, Makarova KS, Shmakov S, Koonin EV.

Proc Natl Acad Sci U S A. 2017 Aug 29;114(35):E7358-E7366. doi: 10.1073/pnas.1709035114. Epub 2017 Aug 15.

13.

Plant and Human MORC Proteins Have DNA-Modifying Activities Similar to Type II Topoisomerases, but Require One or More Additional Factors for Full Activity.

Manohar M, Choi HW, Manosalva P, Austin CA, Peters JE, Klessig DF.

Mol Plant Microbe Interact. 2017 Feb;30(2):87-100. doi: 10.1094/MPMI-10-16-0208-R. Epub 2017 Feb 3.

14.

Targeted genomic analysis reveals widespread autoimmune disease association with regulatory variants in the TNF superfamily cytokine signalling network.

Richard AC, Peters JE, Lee JC, Vahedi G, Schäffer AA, Siegel RM, Lyons PA, Smith KG.

Genome Med. 2016 Jul 19;8(1):76. doi: 10.1186/s13073-016-0329-5.

15.

Insight into Genotype-Phenotype Associations through eQTL Mapping in Multiple Cell Types in Health and Immune-Mediated Disease.

Peters JE, Lyons PA, Lee JC, Richard AC, Fortune MD, Newcombe PJ, Richardson S, Smith KG.

PLoS Genet. 2016 Mar 25;12(3):e1005908. doi: 10.1371/journal.pgen.1005908. eCollection 2016 Mar.

16.

MT-HESS: an efficient Bayesian approach for simultaneous association detection in OMICS datasets, with application to eQTL mapping in multiple tissues.

Lewin A, Saadi H, Peters JE, Moreno-Moral A, Lee JC, Smith KG, Petretto E, Bottolo L, Richardson S.

Bioinformatics. 2016 Feb 15;32(4):523-32. doi: 10.1093/bioinformatics/btv568. Epub 2015 Oct 26.

17.

Conformational toggling controls target site choice for the heteromeric transposase element Tn7.

Shi Q, Straus MR, Caron JJ, Wang H, Chung YS, Guarné A, Peters JE.

Nucleic Acids Res. 2015 Dec 15;43(22):10734-45. doi: 10.1093/nar/gkv913. Epub 2015 Sep 17.

18.

Tn7.

Peters JE.

Microbiol Spectr. 2014 Oct;2(5). doi: 10.1128/microbiolspec.MDNA3-0010-2014. Review.

PMID:
26104363
19.

Mobile genetic elements and genome evolution 2014.

Singh PK, Bourque G, Craig NL, Dubnau JT, Feschotte C, Flasch DA, Gunderson KL, Malik HS, Moran JV, Peters JE, Slotkin RK, Levin HL.

Mob DNA. 2014 Nov 18;5:26. doi: 10.1186/1759-8753-5-26. eCollection 2014.

20.

Vulnerabilities on the lagging-strand template: opportunities for mobile elements.

Fricker AD, Peters JE.

Annu Rev Genet. 2014;48:167-86. doi: 10.1146/annurev-genet-120213-092046. Epub 2014 Sep 3. Review.

PMID:
25195506
21.

Comparison of gene expression microarray data with count-based RNA measurements informs microarray interpretation.

Richard AC, Lyons PA, Peters JE, Biasci D, Flint SM, Lee JC, McKinney EF, Siegel RM, Smith KG.

BMC Genomics. 2014 Aug 4;15:649. doi: 10.1186/1471-2164-15-649.

22.

Heteromeric transposase elements: generators of genomic islands across diverse bacteria.

Peters JE, Fricker AD, Kapili BJ, Petassi MT.

Mol Microbiol. 2014 Sep;93(6):1084-92. doi: 10.1111/mmi.12740. Epub 2014 Aug 19. Review.

23.

Serial analysis of clinical and imaging indices reveals prolonged efficacy of TNF-α and IL-6 receptor targeted therapies in refractory Takayasu arteritis.

Youngstein T, Peters JE, Hamdulay SS, Mewar D, Price-Forbes A, Lloyd M, Jeffery R, Kinderlerer AR, Mason JC.

Clin Exp Rheumatol. 2014 May-Jun;32(3 Suppl 82):S11-8. Epub 2013 Sep 30.

PMID:
24093733
24.

Evolutionary dynamics of the accessory genome of Listeria monocytogenes.

den Bakker HC, Desjardins CA, Griggs AD, Peters JE, Zeng Q, Young SK, Kodira CD, Yandava C, Hepburn TA, Haas BJ, Birren BW, Wiedmann M.

PLoS One. 2013 Jun 25;8(6):e67511. doi: 10.1371/journal.pone.0067511. Print 2013.

25.

Insulin pump therapy in children and adolescents: changes in dietary habits, composition and quality of life.

Peters JE, Mount E, Huggins CE, Rodda C, Silvers MA.

J Paediatr Child Health. 2013 Apr;49(4):E300-5. doi: 10.1111/jpc.12162. Epub 2013 Mar 21.

PMID:
23517231
26.

Identification and characterization of novel Salmonella mobile elements involved in the dissemination of genes linked to virulence and transmission.

Moreno Switt AI, den Bakker HC, Cummings CA, Rodriguez-Rivera LD, Govoni G, Raneiri ML, Degoricija L, Brown S, Hoelzer K, Peters JE, Bolchacova E, Furtado MR, Wiedmann M.

PLoS One. 2012;7(7):e41247. doi: 10.1371/journal.pone.0041247. Epub 2012 Jul 20.

27.

Therapeutic musculoskeletal injection: what is current practice? What is the evidence?

Peters JF.

Minn Med. 2010 Dec;93(12):40-2. Erratum in: Minn Med. 2011 Jan;94(1):8. Peters, James E [corrected to Peters, James F].

PMID:
21265419
28.

Three cases of rheumatoid arthritis with laryngeal stridor.

Peters JE, Burke CJ, Morris VH.

Clin Rheumatol. 2011 May;30(5):723-7. doi: 10.1007/s10067-010-1657-2. Epub 2011 Jan 7.

PMID:
21213004
29.

Tuberculosis and anti-TNF treatment: experience of a central London hospital.

Mankia S, Peters JE, Kang S, Moore S, Ehrenstein MR.

Clin Rheumatol. 2011 Mar;30(3):399-401. doi: 10.1007/s10067-010-1605-1. Epub 2010 Oct 23.

PMID:
20972591
30.

Tn917 targets the region where DNA replication terminates in Bacillus subtilis, highlighting a difference in chromosome processing in the firmicutes.

Shi Q, Huguet-Tapia JC, Peters JE.

J Bacteriol. 2009 Dec;191(24):7623-7. doi: 10.1128/JB.01023-09. Epub 2009 Oct 9.

31.

Transposition into replicating DNA occurs through interaction with the processivity factor.

Parks AR, Li Z, Shi Q, Owens RM, Jin MM, Peters JE.

Cell. 2009 Aug 21;138(4):685-95. doi: 10.1016/j.cell.2009.06.011.

32.

Wegener's granulomatosis presenting as acute systemic vasculitis following 20 years of limited tracheobronchial disease.

Peters JE, Salama AD, Ind PW.

J Laryngol Otol. 2009 Dec;123(12):1375-7. doi: 10.1017/S002221510900454X. Epub 2009 Jan 28. Review.

PMID:
19175952
33.

Tn7 elements: engendering diversity from chromosomes to episomes.

Parks AR, Peters JE.

Plasmid. 2009 Jan;61(1):1-14. doi: 10.1016/j.plasmid.2008.09.008. Epub 2008 Nov 1. Review.

34.

DNA damage differentially activates regional chromosomal loci for Tn7 transposition in Escherichia coli.

Shi Q, Parks AR, Potter BD, Safir IJ, Luo Y, Forster BM, Peters JE.

Genetics. 2008 Jul;179(3):1237-50. doi: 10.1534/genetics.108.088161. Epub 2008 Jun 18.

35.

In vitro mutagenesis of Bacillus subtilis by using a modified Tn7 transposon with an outward-facing inducible promoter.

Bordi C, Butcher BG, Shi Q, Hachmann AB, Peters JE, Helmann JD.

Appl Environ Microbiol. 2008 Jun;74(11):3419-25. doi: 10.1128/AEM.00476-08. Epub 2008 Apr 11.

36.

Annular phase-matched dual-pump coherent anti-stokes Raman spectroscopy system for the simultaneous detection of nitrogen and methane.

Green SM, Rubas PJ, Paul MA, Peters JE, Lucht RP.

Appl Opt. 1998 Mar 20;37(9):1690-701.

PMID:
18268768
37.
38.

Transposon Tn7 is widespread in diverse bacteria and forms genomic islands.

Parks AR, Peters JE.

J Bacteriol. 2007 Mar;189(5):2170-3. Epub 2006 Dec 28.

39.
40.

Construction of an Enterococcus faecalis Tn917-mediated-gene-disruption library offers insight into Tn917 insertion patterns.

Garsin DA, Urbach J, Huguet-Tapia JC, Peters JE, Ausubel FM.

J Bacteriol. 2004 Nov;186(21):7280-9.

41.

Detection of pathogenic Ehrlichia in ticks collected at acquisition sites of human ehrlichiosis in Missouri.

DeShields A, Borman-Shoap E, Peters JE, Gaudreault-Keener M, Arens MQ, Storch GA.

Mo Med. 2004 Mar-Apr;101(2):132-6.

PMID:
15119113
42.

Molecular genetic analysis of 675 group A streptococcus isolates collected in a carrier study at Lackland Air Force Base, San Antonio, Texas.

Hoe NP, Fullerton KE, Liu M, Peters JE, Gackstetter GD, Adams GJ, Musser JM.

J Infect Dis. 2003 Sep 15;188(6):818-27. Epub 2003 Sep 4.

PMID:
12964112
43.

Definition of the Escherichia coli MC4100 genome by use of a DNA array.

Peters JE, Thate TE, Craig NL.

J Bacteriol. 2003 Mar;185(6):2017-21.

44.

Tn7: smarter than we thought.

Peters JE, Craig NL.

Nat Rev Mol Cell Biol. 2001 Nov;2(11):806-14. Review.

PMID:
11715047
47.
48.

Pressure dependence of laser-induced fluorescence from acetone.

Yuen LS, Peters JE, Lucht RP.

Appl Opt. 1997 May 20;36(15):3271-7.

PMID:
18253335
49.

Nerve blocks for regional anesthesia of the face.

Kretzschmar JL, Peters JE.

Am Fam Physician. 1997 Apr;55(5):1701-4. Review.

PMID:
9105198
50.

Simplified quantitation of urinary benzoylecgonine in cocaine addiction research and for related pharmacotherapeutic trials.

Peters JE, Chou JZ, Ho A, Reid K, Borg L, Kreek MJ.

Addiction. 1996 Nov;91(11):1687-97.

PMID:
8972926

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