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TCRpMHCmodels: Structural modelling of TCR-pMHC class I complexes.

Jensen KK, Rantos V, Jappe EC, Olsen TH, Jespersen MC, Jurtz V, Jessen LE, Lanzarotti E, Mahajan S, Peters B, Nielsen M, Marcatili P.

Sci Rep. 2019 Oct 10;9(1):14530. doi: 10.1038/s41598-019-50932-4.


Benchmark datasets of immune receptor-epitope structural complexes.

Mahajan S, Yan Z, Jespersen MC, Jensen KK, Marcatili P, Nielsen M, Sette A, Peters B.

BMC Bioinformatics. 2019 Oct 10;20(1):490. doi: 10.1186/s12859-019-3109-6.


Relating the gut metagenome and metatranscriptome to immunotherapy responses in melanoma patients.

Peters BA, Wilson M, Moran U, Pavlick A, Izsak A, Wechter T, Weber JS, Osman I, Ahn J.

Genome Med. 2019 Oct 9;11(1):61. doi: 10.1186/s13073-019-0672-4.


Single-Cell Transcriptome Analysis of Uniparental Embryos Reveals Parent-of-Origin Effects on Human Preimplantation Development.

Leng L, Sun J, Huang J, Gong F, Yang L, Zhang S, Yuan X, Fang F, Xu X, Luo Y, Bolund L, Peters BA, Lu G, Jiang T, Xu F, Lin G.

Cell Stem Cell. 2019 Sep 27. pii: S1934-5909(19)30389-3. doi: 10.1016/j.stem.2019.09.004. [Epub ahead of print]


Visual objects interact differently during encoding and memory maintenance.

Czoschke S, Peters B, Rahm B, Kaiser J, Bledowski C.

Atten Percept Psychophys. 2019 Sep 6. doi: 10.3758/s13414-019-01861-x. [Epub ahead of print]


Candida albicans and Staphylococcus aureus Pathogenicity and Polymicrobial Interactions: Lessons beyond Koch's Postulates.

Todd OA, Peters BM.

J Fungi (Basel). 2019 Sep 4;5(3). pii: E81. doi: 10.3390/jof5030081. Review.


Perceptions of romantic partners' emotional suppression are more biased than accurate.

Peters BJ, Overall NC.

Emotion. 2019 Sep 5. doi: 10.1037/emo0000679. [Epub ahead of print]


Fungi form interkingdom microbial communities in the primordial human gut that develop with gestational age.

Willis KA, Purvis JH, Myers ED, Aziz MM, Karabayir I, Gomes CK, Peters BM, Akbilgic O, Talati AJ, Pierre JF.

FASEB J. 2019 Aug 31:fj201901436RR. doi: 10.1096/fj.201901436RR. [Epub ahead of print]


A survey of known immune epitopes in the enteroviruses strains associated with acute flaccid myelitis.

Grifoni A, Mahajan S, Sidney J, Martini S, Scheuermann RH, Peters B, Sette A.

Hum Immunol. 2019 Aug 23. pii: S0198-8859(19)30608-1. doi: 10.1016/j.humimm.2019.08.004. [Epub ahead of print]


Evaluation of baiting fipronil-loaded silica nanocapsules against termite colonies in fields.

Peters BC, Wibowo D, Yang GZ, Hui Y, Middelberg APJ, Zhao CX.

Heliyon. 2019 Aug 10;5(8):e02277. doi: 10.1016/j.heliyon.2019.e02277. eCollection 2019 Aug.


De novo mutations in mitochondrial DNA of iPSCs produce immunogenic neoepitopes in mice and humans.

Deuse T, Hu X, Agbor-Enoh S, Koch M, Spitzer MH, Gravina A, Alawi M, Marishta A, Peters B, Kosaloglu-Yalcin Z, Yang Y, Rajalingam R, Wang D, Nashan B, Kiefmann R, Reichenspurner H, Valantine H, Weissman IL, Schrepfer S.

Nat Biotechnol. 2019 Oct;37(10):1137-1144. doi: 10.1038/s41587-019-0227-7. Epub 2019 Aug 19.


Cumulative Antenatal Risk and Kindergarten Readiness in Preterm-Born Preschoolers.

Heitzer AM, Piercy JC, Peters BN, Mattes AM, Klarr JM, Batton B, Ofen N, Raz S.

J Abnorm Child Psychol. 2019 Aug 16. doi: 10.1007/s10802-019-00577-8. [Epub ahead of print]


Disparate Candida albicans biofilm formation in clinical lipid emulsions due to capric acid mediated inhibition.

Willems HME, Stultz JS, Coltrane ME, Fortwendel JP, Peters BM.

Antimicrob Agents Chemother. 2019 Aug 12. pii: AAC.01394-19. doi: 10.1128/AAC.01394-19. [Epub ahead of print]


Restricted myeloperoxidase epitopes drive the adaptive immune response in MPO-ANCA vasculitis.

Free ME, Stember KG, Hess JJ, McInnis EA, Lardinois O, Hogan SL, Hu Y, Mendoza C, Le AK, Guseman AJ, Pilkinton MA, Bortone DS, Cowens K, Sidney J, Karosiene E, Peters B, James E, Kwok WW, Vincent BG, Mallal SA, Jennette JC, Ciavatta DJ, Falk RJ.

J Autoimmun. 2019 Aug 2:102306. doi: 10.1016/j.jaut.2019.102306. [Epub ahead of print]


Does expressing emotions enhance perceptual accuracy of negative emotions during relationship interactions?

Overall NC, Clark MS, Fletcher GJO, Peters BJ, Chang VT.

Emotion. 2019 Aug 1. doi: 10.1037/emo0000653. [Epub ahead of print]


A Modified Injector and Sample Acquisition Protocol Can Improve Data Quality and Reduce Inter-Instrument Variability of the Helios Mass Cytometer.

Lee BH, Kelly G, Bradford S, Davila M, Guo XV, Amir ED, Thrash EM, Solga MD, Lannigan J, Sellers B, Candia J, Tsang J, Montgomery RR, Tamaki SJ, Sigdel TK, Sarwal MM, Lanier LL, Tian Y, Kim C, Hinz D, Peters B, Sette A, Rahman AH.

Cytometry A. 2019 Sep;95(9):1019-1030. doi: 10.1002/cyto.a.23866. Epub 2019 Jul 30.


Characterization of Magnitude and Antigen Specificity of HLA-DP, DQ, and DRB3/4/5 Restricted DENV-Specific CD4+ T Cell Responses.

Grifoni A, Moore E, Voic H, Sidney J, Phillips E, Jadi R, Mallal S, De Silva AD, De Silva AM, Peters B, Weiskopf D, Sette A.

Front Immunol. 2019 Jul 5;10:1568. doi: 10.3389/fimmu.2019.01568. eCollection 2019.


Morphologic Analysis of the Carpal Tunnel and Median Nerve Following Open and Endoscopic Carpal Tunnel Release.

Peters BR, Martin AM, Memauri BF, Bock HW, Turner RB, Murray KA, Islur A.

Hand (N Y). 2019 Jul 23:1558944719861711. doi: 10.1177/1558944719861711. [Epub ahead of print]


Incense Burning is Associated with Human Oral Microbiota Composition.

Vallès Y, Inman CK, Peters BA, Wareth LA, Abdulle A, Alsafar H, Anouti FA, Dhaheri AA, Galani D, Haji M, Hamiz AA, Hosani AA, Houqani MA, Aljunaibi A, Kazim M, Kirchhoff T, Mahmeed WA, Maskari FA, Alnaeemi A, Oumeziane N, Ramasamy R, Schmidt AM, Vallès H, Zaabi EA, Sherman S, Ali R, Ahn J, Hayes RB.

Sci Rep. 2019 Jul 11;9(1):10039. doi: 10.1038/s41598-019-46353-y.


Differential trajectories of memory quality and guessing across sequential reports from working memory.

Peters B, Rahm B, Kaiser J, Bledowski C.

J Vis. 2019 Jul 1;19(7):3. doi: 10.1167/19.7.3.


Reporting and connecting cell type names and gating definitions through ontologies.

Overton JA, Vita R, Dunn P, Burel JG, Bukhari SAC, Cheung KH, Kleinstein SH, Diehl AD, Peters B.

BMC Bioinformatics. 2019 Apr 25;20(Suppl 5):182. doi: 10.1186/s12859-019-2725-5.


Analysis of Allergen-Specific T Cell and IgE Reactivity to Different Preparations of Cow's Milk-Containing Food Extracts.

Chen M, Sutherland A, Birrueta G, Laubach S, Leonard S, Peters B, Schulten V.

Cells. 2019 Jul 2;8(7). pii: E667. doi: 10.3390/cells8070667.


MOGSA: Integrative Single Sample Gene-set Analysis of Multiple Omics Data.

Meng C, Basunia A, Peters B, Gholami AM, Kuster B, Culhane AC.

Mol Cell Proteomics. 2019 Aug 9;18(8 suppl 1):S153-S168. doi: 10.1074/mcp.TIR118.001251. Epub 2019 Jun 26.


Circulating T cell-monocyte complexes are markers of immune perturbations.

Burel JG, Pomaznoy M, Lindestam Arlehamn CS, Weiskopf D, da Silva Antunes R, Jung Y, Babor M, Schulten V, Seumois G, Greenbaum JA, Premawansa S, Premawansa G, Wijewickrama A, Vidanagama D, Gunasena B, Tippalagama R, deSilva AD, Gilman RH, Saito M, Taplitz R, Ley K, Vijayanand P, Sette A, Peters B.

Elife. 2019 Jun 25;8. pii: e46045. doi: 10.7554/eLife.46045.


Effect of Iron Oxide Nanoparticles on the Oxidation and Secondary Structure of Growth Hormone.

Varkhede N, Peters BH, Wei Y, Middaugh CR, Schöneich C, Forrest ML.

J Pharm Sci. 2019 Oct;108(10):3372-3381. doi: 10.1016/j.xphs.2019.06.007. Epub 2019 Jun 16.


Do habitual emotional suppression measures predict response-focused situational suppression during social interactions?

Peters BJ, Overall NC, Cameron LD, Hammond MD, Low RST, Girme YU.

Emotion. 2019 Jun 13. doi: 10.1037/emo0000620. [Epub ahead of print]


Ionic liquid cations as methylation agent for extremely weak chalcogenido metalate nucleophiles.

Peters B, Santner S, Donsbach C, Vöpel P, Smarsly B, Dehnen S.

Chem Sci. 2019 Apr 22;10(20):5211-5217. doi: 10.1039/c9sc01358j. eCollection 2019 May 28.


Female patients are less satisfied with biological treatment for psoriasis and experience more side-effects than male patients: results from the prospective BioCAPTURE registry.

van der Schoot LS, van den Reek JMPA, Groenewoud JMM, Otero ME, Njoo MD, Ossenkoppele PM, Mommers JM, Koetsier MIA, Berends MAM, Arnold WP, Peters B, Andriessen MPM, Den Hengst CW, Kuijpers ALA, de Jong EMGJ.

J Eur Acad Dermatol Venereol. 2019 Oct;33(10):1913-1920. doi: 10.1111/jdv.15733. Epub 2019 Jul 7.


Candida albicans Augments Staphylococcus aureus Virulence by Engaging the Staphylococcal agr Quorum Sensing System.

Todd OA, Fidel PL Jr, Harro JM, Hilliard JJ, Tkaczyk C, Sellman BR, Noverr MC, Peters BM.

MBio. 2019 Jun 4;10(3). pii: e00910-19. doi: 10.1128/mBio.00910-19.


IEDB-AR: immune epitope database-analysis resource in 2019.

Dhanda SK, Mahajan S, Paul S, Yan Z, Kim H, Jespersen MC, Jurtz V, Andreatta M, Greenbaum JA, Marcatili P, Sette A, Nielsen M, Peters B.

Nucleic Acids Res. 2019 Jul 2;47(W1):W502-W506. doi: 10.1093/nar/gkz452.


An ATAC-seq atlas of chromatin accessibility in mouse tissues.

Liu C, Wang M, Wei X, Wu L, Xu J, Dai X, Xia J, Cheng M, Yuan Y, Zhang P, Li J, Feng T, Chen A, Zhang W, Chen F, Shang Z, Zhang X, Peters BA, Liu L.

Sci Data. 2019 May 20;6(1):65. doi: 10.1038/s41597-019-0071-0.


The effect of the CYP2D6 genotype on the maintenance dose of metoprolol in a chronic Dutch patient population.

Poulussen FCP, Peters BJ, Hua KH, Houthuizen P, Grouls RJ, Deenen MJ.

Pharmacogenet Genomics. 2019 Sep;29(7):179-182. doi: 10.1097/FPC.0000000000000381.


Widespread Tau-Specific CD4 T Cell Reactivity in the General Population.

Lindestam Arlehamn CS, Pham J, Alcalay RN, Frazier A, Shorr E, Carpenter C, Sidney J, Dhanwani R, Agin-Liebes J, Garretti F, Amara AW, Standaert DG, Phillips EJ, Mallal SA, Peters B, Sulzer D, Sette A.

J Immunol. 2019 Jul 1;203(1):84-92. doi: 10.4049/jimmunol.1801506. Epub 2019 May 13.


Screening for Vestibular Disorders Using the Modified Clinical Test of Sensory Interaction and Balance and Tandem Walking With Eyes Closed.

Cohen HS, Mulavara AP, Stitz J, Sangi-Haghpeykar H, Williams SP, Peters BT, Bloomberg JJ.

Otol Neurotol. 2019 Jun;40(5):658-665. doi: 10.1097/MAO.0000000000002173.


Silymarin protects against radiocontrast-induced nephropathy in mice.

de Souza Santos V, Peters B, Côco LZ, Alves GM, de Assis ALEM, Nogueira BV, Meyrelles SS, Porto ML, Vasquez EC, Campagnaro BP, Pereira TMC.

Life Sci. 2019 Jul 1;228:305-315. doi: 10.1016/j.lfs.2019.04.061. Epub 2019 Apr 29.


Characterization and epitope identification of the T cell response in non-allergic individuals exposed to mouse allergen.

Grifoni A, da Silva Antunes R, Westernberg L, Pham J, Birrueta G, Peters B, Sette A, Schulten V.

World Allergy Organ J. 2019 Apr 20;12(4):100026. doi: 10.1016/j.waojou.2019.100026. eCollection 2019.


Childhood epilepsy with a small number of seizures may be left untreated: an international prospective study.

Arts WF, Geerts AT, Brouwer OF, van Donselaar CA, Stroink H, Peters BA, Peeters EA, Camfield P, Camfield C.

Epileptic Disord. 2019 Apr 1;21(2):141-153. doi: 10.1684/epd.2019.1040.


Reduced biventricular volumes and myocardial dysfunction long-term after pediatric heart transplantation assessed by CMR.

Latus H, Hachmann P, Voges I, Mueller S, Gummel K, Reich B, Sarikouch S, Peters B, Mazhari N, Behnke-Hall K, Jux C, Apitz C, Thul J, Akintuerk H, Bauer J, Schranz D.

Transplantation. 2019 Apr 4. doi: 10.1097/TP.0000000000002738. [Epub ahead of print]


Industrial Regulation of Fatigue: Lessons Learned From Aviation.

Flynn-Evans EE, Ahmed O, Berneking M, Collen JF, Kancherla BS, Peters BR, Rishi MA, Sullivan SS, Upender R, Gurubhagavatula I; American Academy of Sleep Medicine Public Safety Committee.

J Clin Sleep Med. 2019 Apr 15;15(4):537-538. doi: 10.5664/jcsm.7704. No abstract available.


Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping, and de novo assembly.

Wang O, Chin R, Cheng X, Wu MKY, Mao Q, Tang J, Sun Y, Anderson E, Lam HK, Chen D, Zhou Y, Wang L, Fan F, Zou Y, Xie Y, Zhang RY, Drmanac S, Nguyen D, Xu C, Villarosa C, Gablenz S, Barua N, Nguyen S, Tian W, Liu JS, Wang J, Liu X, Qi X, Chen A, Wang H, Dong Y, Zhang W, Alexeev A, Yang H, Wang J, Kristiansen K, Xu X, Drmanac R, Peters BA.

Genome Res. 2019 May;29(5):798-808. doi: 10.1101/gr.245126.118. Epub 2019 Apr 2.


Habitat explains patterns of population decline for an invasive crayfish.

Larson ER, Kreps TA, Peters B, Peters JA, Lodge DM.

Ecology. 2019 May;100(5):e02659. doi: 10.1002/ecy.2659. Epub 2019 Mar 28.


Results of a nationwide hospice and palliative care social work job analysis.

Head B, Peters B, Middleton A, Friedman C, Guman N.

J Soc Work End Life Palliat Care. 2019 Jan-Mar;15(1):16-33. doi: 10.1080/15524256.2019.1577326. Epub 2019 Mar 20.


Variability in German Cockroach Extract Composition Greatly Impacts T Cell Potency in Cockroach-Allergic Donors.

Birrueta G, Frazier A, Pomés A, Glesner J, Filep S, Schal C, Jeong KY, McMurtrey C, Vander Schans T, Hildebrand WH, Busse P, Beigelman A, Bacharier LB, Peters B, Sette A, Schulten V.

Front Immunol. 2019 Feb 27;10:313. doi: 10.3389/fimmu.2019.00313. eCollection 2019.


Dengue-specific CD8+ T cell subsets display specialized transcriptomic and TCR profiles.

Tian Y, Babor M, Lane J, Seumois G, Liang S, Goonawardhana NDS, De Silva AD, Phillips EJ, Mallal SA, da Silva Antunes R, Grifoni A, Vijayanand P, Weiskopf D, Peters B, Sette A.

J Clin Invest. 2019 Mar 18;130:1727-1741. doi: 10.1172/JCI123726. eCollection 2019 Mar 18.


Pathophysiological responses of pine defensive metabolites largely lack differences between pine species but vary with eliciting ophiostomatoid fungal species.

Cale JA, Klutsch JG, Dykstra CB, Peters B, Erbilgin N.

Tree Physiol. 2019 Jul 18;39(7):1121-1135. doi: 10.1093/treephys/tpz012.


Treatment of oncogene-driven non-small cell lung cancer.

Kastelijn EA, de Langen AJ, Peters BJM.

Curr Opin Pulm Med. 2019 May;25(3):300-307. doi: 10.1097/MCP.0000000000000572.


Antibody Specific B-Cell Epitope Predictions: Leveraging Information From Antibody-Antigen Protein Complexes.

Jespersen MC, Mahajan S, Peters B, Nielsen M, Marcatili P.

Front Immunol. 2019 Feb 26;10:298. doi: 10.3389/fimmu.2019.00298. eCollection 2019.


Host Transcriptomics as a Tool to Identify Diagnostic and Mechanistic Immune Signatures of Tuberculosis.

Burel JG, Babor M, Pomaznoy M, Lindestam Arlehamn CS, Khan N, Sette A, Peters B.

Front Immunol. 2019 Feb 19;10:221. doi: 10.3389/fimmu.2019.00221. eCollection 2019. Review.


Scalable and safe synthetic organic electroreduction inspired by Li-ion battery chemistry.

Peters BK, Rodriguez KX, Reisberg SH, Beil SB, Hickey DP, Kawamata Y, Collins M, Starr J, Chen L, Udyavara S, Klunder K, Gorey TJ, Anderson SL, Neurock M, Minteer SD, Baran PS.

Science. 2019 Feb 22;363(6429):838-845. doi: 10.1126/science.aav5606.


Investigating Substrate Analogues for Mycobacterial MenJ: Truncated and Partially Saturated Menaquinones.

Koehn JT, Beuning CN, Peters BJ, Dellinger SK, Van Cleave C, Crick DC, Crans DC.

Biochemistry. 2019 Mar 26;58(12):1596-1615. doi: 10.1021/acs.biochem.9b00007. Epub 2019 Mar 6.


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