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The effect of the CYP2D6 genotype on the maintenance dose of metoprolol in a chronic Dutch patient population.

Poulussen FCP, Peters BJ, Hua KH, Houthuizen P, Grouls RJ, Deenen MJ.

Pharmacogenet Genomics. 2019 May 15. doi: 10.1097/FPC.0000000000000381. [Epub ahead of print]


Widespread Tau-Specific CD4 T Cell Reactivity in the General Population.

Lindestam Arlehamn CS, Pham J, Alcalay RN, Frazier A, Shorr E, Carpenter C, Sidney J, Dhanwani R, Agin-Liebes J, Garretti F, Amara AW, Standaert DG, Phillips EJ, Mallal SA, Peters B, Sulzer D, Sette A.

J Immunol. 2019 May 13. pii: ji1801506. doi: 10.4049/jimmunol.1801506. [Epub ahead of print]


Screening for Vestibular Disorders Using the Modified Clinical Test of Sensory Interaction and Balance and Tandem Walking With Eyes Closed.

Cohen HS, Mulavara AP, Stitz J, Sangi-Haghpeykar H, Williams SP, Peters BT, Bloomberg JJ.

Otol Neurotol. 2019 Jun;40(5):658-665. doi: 10.1097/MAO.0000000000002173.


Silymarin protects against radiocontrast-induced nephropathy in mice.

de Souza Santos V, Peters B, Côco LZ, Alves GM, de Assis ALEM, Nogueira BV, Meyrelles SS, Porto ML, Vasquez EC, Campagnaro BP, Pereira TMC.

Life Sci. 2019 Apr 29. pii: S0024-3205(19)30329-7. doi: 10.1016/j.lfs.2019.04.061. [Epub ahead of print]


Characterization and epitope identification of the T cell response in non-allergic individuals exposed to mouse allergen.

Grifoni A, da Silva Antunes R, Westernberg L, Pham J, Birrueta G, Peters B, Sette A, Schulten V.

World Allergy Organ J. 2019 Apr 20;12(4):100026. doi: 10.1016/j.waojou.2019.100026. eCollection 2019.


Childhood epilepsy with a small number of seizures may be left untreated: an international prospective study.

Arts WF, Geerts AT, Brouwer OF, van Donselaar CA, Stroink H, Peters BA, Peeters EA, Camfield P, Camfield C.

Epileptic Disord. 2019 Apr 1;21(2):141-153. doi: 10.1684/epd.2019.1040.


Reduced biventricular volumes and myocardial dysfunction long-term after pediatric heart transplantation assessed by CMR.

Latus H, Hachmann P, Voges I, Mueller S, Gummel K, Reich B, Sarikouch S, Peters B, Mazhari N, Behnke-Hall K, Jux C, Apitz C, Thul J, Akintuerk H, Bauer J, Schranz D.

Transplantation. 2019 Apr 4. doi: 10.1097/TP.0000000000002738. [Epub ahead of print]


Industrial Regulation of Fatigue: Lessons Learned From Aviation.

Flynn-Evans EE, Ahmed O, Berneking M, Collen JF, Kancherla BS, Peters BR, Rishi MA, Sullivan SS, Upender R, Gurubhagavatula I; American Academy of Sleep Medicine Public Safety Committee.

J Clin Sleep Med. 2019 Apr 15;15(4):537-538. doi: 10.5664/jcsm.7704. No abstract available.


Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping, and de novo assembly.

Wang O, Chin R, Cheng X, Wu MKY, Mao Q, Tang J, Sun Y, Anderson E, Lam HK, Chen D, Zhou Y, Wang L, Fan F, Zou Y, Xie Y, Zhang RY, Drmanac S, Nguyen D, Xu C, Villarosa C, Gablenz S, Barua N, Nguyen S, Tian W, Liu JS, Wang J, Liu X, Qi X, Chen A, Wang H, Dong Y, Zhang W, Alexeev A, Yang H, Wang J, Kristiansen K, Xu X, Drmanac R, Peters BA.

Genome Res. 2019 May;29(5):798-808. doi: 10.1101/gr.245126.118. Epub 2019 Apr 2.


Habitat explains patterns of population decline for an invasive crayfish.

Larson ER, Kreps TA, Peters B, Peters JA, Lodge DM.

Ecology. 2019 May;100(5):e02659. doi: 10.1002/ecy.2659. Epub 2019 Mar 28.


Results of a nationwide hospice and palliative care social work job analysis.

Head B, Peters B, Middleton A, Friedman C, Guman N.

J Soc Work End Life Palliat Care. 2019 Jan-Mar;15(1):16-33. doi: 10.1080/15524256.2019.1577326. Epub 2019 Mar 20.


Variability in German Cockroach Extract Composition Greatly Impacts T Cell Potency in Cockroach-Allergic Donors.

Birrueta G, Frazier A, Pomés A, Glesner J, Filep S, Schal C, Jeong KY, McMurtrey C, Vander Schans T, Hildebrand WH, Busse P, Beigelman A, Bacharier LB, Peters B, Sette A, Schulten V.

Front Immunol. 2019 Feb 27;10:313. doi: 10.3389/fimmu.2019.00313. eCollection 2019.


Dengue-specific CD8+ T cell subsets display specialized transcriptomic and TCR profiles.

Tian Y, Babor M, Lane J, Seumois G, Liang S, Goonawardhana NDS, De Silva AD, Phillips EJ, Mallal SA, da Silva Antunes R, Grifoni A, Vijayanand P, Weiskopf D, Peters B, Sette A.

J Clin Invest. 2019 Mar 18;130:1727-1741. doi: 10.1172/JCI123726. eCollection 2019 Mar 18.


Pathophysiological responses of pine defensive metabolites largely lack differences between pine species but vary with eliciting ophiostomatoid fungal species.

Cale JA, Klutsch JG, Dykstra CB, Peters B, Erbilgin N.

Tree Physiol. 2019 Mar 16. pii: tpz012. doi: 10.1093/treephys/tpz012. [Epub ahead of print]


Treatment of oncogene-driven non-small cell lung cancer.

Kastelijn EA, de Langen AJ, Peters BJM.

Curr Opin Pulm Med. 2019 May;25(3):300-307. doi: 10.1097/MCP.0000000000000572.


Antibody Specific B-Cell Epitope Predictions: Leveraging Information From Antibody-Antigen Protein Complexes.

Jespersen MC, Mahajan S, Peters B, Nielsen M, Marcatili P.

Front Immunol. 2019 Feb 26;10:298. doi: 10.3389/fimmu.2019.00298. eCollection 2019.


Host Transcriptomics as a Tool to Identify Diagnostic and Mechanistic Immune Signatures of Tuberculosis.

Burel JG, Babor M, Pomaznoy M, Lindestam Arlehamn CS, Khan N, Sette A, Peters B.

Front Immunol. 2019 Feb 19;10:221. doi: 10.3389/fimmu.2019.00221. eCollection 2019. Review.


Screening for Vestibular Disorders Using the Modified Clinical Test of Sensory Interaction and Balance and Tandem Walking With Eyes Closed.

Cohen HS, Mulavara AP, Stitz J, Sangi-Haghpeykar H, Williams SP, Peters BT, Bloomberg JJ.

Otol Neurotol. 2019 Feb 27. doi: 10.1097/MAO.0000000000002173. [Epub ahead of print]


Scalable and safe synthetic organic electroreduction inspired by Li-ion battery chemistry.

Peters BK, Rodriguez KX, Reisberg SH, Beil SB, Hickey DP, Kawamata Y, Collins M, Starr J, Chen L, Udyavara S, Klunder K, Gorey TJ, Anderson SL, Neurock M, Minteer SD, Baran PS.

Science. 2019 Feb 22;363(6429):838-845. doi: 10.1126/science.aav5606.


Investigating Substrate Analogues for Mycobacterial MenJ: Truncated and Partially Saturated Menaquinones.

Koehn JT, Beuning CN, Peters BJ, Dellinger SK, Van Cleave C, Crick DC, Crans DC.

Biochemistry. 2019 Mar 26;58(12):1596-1615. doi: 10.1021/acs.biochem.9b00007. Epub 2019 Mar 6.


Reducing risk of Type 2 diabetes in HIV: a mixed-methods investigation of the STOP-Diabetes diet and physical activity intervention.

Duncan AD, Peters BS, Rivas C, Goff LM.

Diabet Med. 2019 Feb 7. doi: 10.1111/dme.13927. [Epub ahead of print]


The Microbiome in Lung Cancer Tissue and Recurrence-Free Survival.

Peters BA, Hayes RB, Goparaju C, Reid C, Pass HI, Ahn J.

Cancer Epidemiol Biomarkers Prev. 2019 Apr;28(4):731-740. doi: 10.1158/1055-9965.EPI-18-0966. Epub 2019 Feb 7.


Biofilm Formation of Staphylococcus aureus under Food Heat Processing Conditions: First Report on CML Production within Biofilm.

Miao J, Lin S, Soteyome T, Peters BM, Li Y, Chen H, Su J, Li L, Li B, Xu Z, Shirtliff ME, Harro JM.

Sci Rep. 2019 Feb 4;9(1):1312. doi: 10.1038/s41598-018-35558-2.


Most viral peptides displayed by class I MHC on infected cells are immunogenic.

Croft NP, Smith SA, Pickering J, Sidney J, Peters B, Faridi P, Witney MJ, Sebastian P, Flesch IEA, Heading SL, Sette A, La Gruta NL, Purcell AW, Tscharke DC.

Proc Natl Acad Sci U S A. 2019 Feb 19;116(8):3112-3117. doi: 10.1073/pnas.1815239116. Epub 2019 Feb 4.


Re-boost immunizations with the peptide-based therapeutic HIV vaccine, Vacc-4x, restores geometric mean viral load set-point during treatment interruption.

Rockstroh JK, Asmuth D, Pantaleo G, Clotet B, Podzamczer D, van Lunzen J, Arastéh K, Mitsuyasu R, Peters B, Silvia N, Jolliffe D, Ökvist M, Krogsgaard K, Sommerfelt MA.

PLoS One. 2019 Jan 30;14(1):e0210965. doi: 10.1371/journal.pone.0210965. eCollection 2019.


Significant abundance of cis configurations of coding variants in diploid human genomes.

Hoehe MR, Herwig R, Mao Q, Peters BA, Drmanac R, Church GM, Huebsch T.

Nucleic Acids Res. 2019 Apr 8;47(6):2981-2995. doi: 10.1093/nar/gkz031.


Long-term results after surgical repair of atrioventricular septal defect.

Schleiger A, Miera O, Peters B, Schmitt KRL, Kramer P, Buracionok J, Murin P, Cho MY, Photiadis J, Berger F, Ovroutski S.

Interact Cardiovasc Thorac Surg. 2018 Dec 22. doi: 10.1093/icvts/ivy334. [Epub ahead of print]


Investigation of Outbreak-Specific Nonsynonymous Mutations on Ebolavirus GP in the Context of Known Immune Reactivity.

Vaughan K, Xu X, Peters B, Sette A.

J Immunol Res. 2018 Nov 15;2018:1846207. doi: 10.1155/2018/1846207. eCollection 2018.


A Review on T Cell Epitopes Identified Using Prediction and Cell-Mediated Immune Models for Mycobacterium tuberculosis and Bordetella pertussis.

Tian Y, da Silva Antunes R, Sidney J, Lindestam Arlehamn CS, Grifoni A, Dhanda SK, Paul S, Peters B, Weiskopf D, Sette A.

Front Immunol. 2018 Nov 29;9:2778. doi: 10.3389/fimmu.2018.02778. eCollection 2018. Review.


GOnet: a tool for interactive Gene Ontology analysis.

Pomaznoy M, Ha B, Peters B.

BMC Bioinformatics. 2018 Dec 7;19(1):470. doi: 10.1186/s12859-018-2533-3.


Gibbs free-energy differences between polymorphs via a diabat approach.

Kamat K, Peters B.

J Chem Phys. 2018 Dec 7;149(21):214106. doi: 10.1063/1.5051448.


S-shaped Kidney: A Rare Occurrence of Supernumerary Kidney with Fusion-malrotation.

Mebis W, Peters B, van der Zijden T.

J Belg Soc Radiol. 2018 Nov 23;102(1):73. doi: 10.5334/jbsr.1666. No abstract available.


Epitope Specific Antibodies and T Cell Receptors in the Immune Epitope Database.

Mahajan S, Vita R, Shackelford D, Lane J, Schulten V, Zarebski L, Jespersen MC, Marcatili P, Nielsen M, Sette A, Peters B.

Front Immunol. 2018 Nov 20;9:2688. doi: 10.3389/fimmu.2018.02688. eCollection 2018.


Systematic evaluation of the efficacy-effectiveness gap of systemic treatments in metastatic nonsmall cell lung cancer.

Cramer-van der Welle CM, Peters BJM, Schramel FMNH, Klungel OH, Groen HJM, van de Garde EMW; Santeon NSCLC Study Group; Santeon NSCLC study group.

Eur Respir J. 2018 Dec 20;52(6). pii: 1801100. doi: 10.1183/13993003.01100-2018. Print 2018 Dec.


Microbial virulence, molecular epidemiology and pathogenic factors of fluoroquinolone-resistant Haemophilus influenzae infections in Guangzhou, China.

Chen D, Wen S, Feng D, Xu R, Liu J, Peters BM, Su D, Lin Y, Yang L, Xu Z, Shirtliff ME.

Ann Clin Microbiol Antimicrob. 2018 Nov 23;17(1):41. doi: 10.1186/s12941-018-0290-9.


Effect of plasma exchange on antifactor Xa activity of enoxaparin and serum levetiracetam levels.

Peters BJ, Hofer M, Daniels CE, Winters JL.

Am J Health Syst Pharm. 2018 Dec 1;75(23):1883-1888. doi: 10.2146/ajhp170885.


Impact of Genetic Polymorphisms on Human Immune Cell Gene Expression.

Schmiedel BJ, Singh D, Madrigal A, Valdovino-Gonzalez AG, White BM, Zapardiel-Gonzalo J, Ha B, Altay G, Greenbaum JA, McVicker G, Seumois G, Rao A, Kronenberg M, Peters B, Vijayanand P.

Cell. 2018 Nov 29;175(6):1701-1715.e16. doi: 10.1016/j.cell.2018.10.022. Epub 2018 Nov 15.


Footprints of antigen processing boost MHC class II natural ligand predictions.

Barra C, Alvarez B, Paul S, Sette A, Peters B, Andreatta M, Buus S, Nielsen M.

Genome Med. 2018 Nov 16;10(1):84. doi: 10.1186/s13073-018-0594-6.


3' Branch ligation: a novel method to ligate non-complementary DNA to recessed or internal 3'OH ends in DNA or RNA.

Wang L, Xi Y, Zhang W, Wang W, Shen H, Wang X, Zhao X, Alexeev A, Peters BA, Albert A, Xu X, Ren H, Wang O, Kirkconnell K, Perazich H, Clark S, Hurowitz E, Chen A, Xu X, Drmanac R, Jiang Y.

DNA Res. 2019 Feb 1;26(1):45-53. doi: 10.1093/dnares/dsy037.


Transcriptomics Study on Staphylococcus aureus Biofilm Under Low Concentration of Ampicillin.

Liu J, Yang L, Hou Y, Soteyome T, Zeng B, Su J, Li L, Li B, Chen D, Li Y, Wu A, Shirtliff ME, Harro JM, Xu Z, Peters BM.

Front Microbiol. 2018 Oct 30;9:2413. doi: 10.3389/fmicb.2018.02413. eCollection 2018.


Massive femur defect after Ewing's sarcoma resection reconstructed with a free vascularised fibular graft in a four-year-old girl.

Vermeersch N, Peters B, Somville J, Van Landuyt K, Thiessen F, Tondu T.

Acta Chir Belg. 2018 Nov 11:1-5. doi: 10.1080/00015458.2018.1534398. [Epub ahead of print]


Arterialization of the Venous System for Acute and Chronic Ischemia of the Hand: A Case Series With Prospective Duplex Ultrasound Assessment.

Peters BR, Liu T, Buchel E, Sigurdson L, Hayakawa T, Islur A.

Hand (N Y). 2018 Nov 12:1558944718810873. doi: 10.1177/1558944718810873. [Epub ahead of print]


Cutting Edge: Transcriptional Profiling Reveals Multifunctional and Cytotoxic Antiviral Responses of Zika Virus-Specific CD8+ T Cells.

Grifoni A, Costa-Ramos P, Pham J, Tian Y, Rosales SL, Seumois G, Sidney J, de Silva AD, Premkumar L, Collins MH, Stone M, Norris PJ, Romero CME, Durbin A, Ricciardi MJ, Ledgerwood JE, de Silva AM, Busch M, Peters B, Vijayanand P, Harris E, Falconar AK, Kallas E, Weiskopf D, Sette A.

J Immunol. 2018 Dec 15;201(12):3487-3491. doi: 10.4049/jimmunol.1801090. Epub 2018 Nov 9.


A Mass Conservative Kalman Filter Algorithm for Computational Thermo-Fluid Dynamics.

Introini C, Lorenzi S, Cammi A, Baroli D, Peters B, Bordas S.

Materials (Basel). 2018 Nov 8;11(11). pii: E2222. doi: 10.3390/ma11112222.


Putting benchmarks in their rightful place: The heart of computational biology.

Peters B, Brenner SE, Wang E, Slonim D, Kann MG.

PLoS Comput Biol. 2018 Nov 8;14(11):e1006494. doi: 10.1371/journal.pcbi.1006494. eCollection 2018 Nov.


Predicting T cell recognition of MHC class I restricted neoepitopes.

Koşaloğlu-Yalçın Z, Lanka M, Frentzen A, Logandha Ramamoorthy Premlal A, Sidney J, Vaughan K, Greenbaum J, Robbins P, Gartner J, Sette A, Peters B.

Oncoimmunology. 2018 Aug 27;7(11):e1492508. doi: 10.1080/2162402X.2018.1492508. eCollection 2018.


Induction and Recovery of the Viable but Nonculturable State of Hop-Resistance Lactobacillus brevis.

Liu J, Deng Y, Soteyome T, Li Y, Su J, Li L, Li B, Shirtliff ME, Xu Z, Peters BM.

Front Microbiol. 2018 Oct 15;9:2076. doi: 10.3389/fmicb.2018.02076. eCollection 2018.


The Immune Epitope Database (IEDB): 2018 update.

Vita R, Mahajan S, Overton JA, Dhanda SK, Martini S, Cantrell JR, Wheeler DK, Sette A, Peters B.

Nucleic Acids Res. 2019 Jan 8;47(D1):D339-D343. doi: 10.1093/nar/gky1006.


Association of dietary fibre intake and gut microbiota in adults.

Lin D, Peters BA, Friedlander C, Freiman HJ, Goedert JJ, Sinha R, Miller G, Bernstein MA, Hayes RB, Ahn J.

Br J Nutr. 2018 Nov;120(9):1014-1022. doi: 10.1017/S0007114518002465.


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