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Immobilized enzyme reactors based on nucleoside phosphorylases and 2'-deoxyribosyltransferase for the in-flow synthesis of pharmaceutically relevant nucleoside analogues.

Rinaldi F, Fernández-Lucas J, de la Fuente D, Zheng C, Bavaro T, Peters B, Massolini G, Annunziata F, Conti P, de la Mata I, Terreni M, Calleri E.

Bioresour Technol. 2020 Mar 26;307:123258. doi: 10.1016/j.biortech.2020.123258. [Epub ahead of print]


IterCluster: a barcode clustering algorithm for long fragment read analysis.

Weng J, Chen T, Xie Y, Xu X, Zhang G, Peters BA, Drmanac R.

PeerJ. 2020 Mar 24;8:e8431. doi: 10.7717/peerj.8431. eCollection 2020.


Renal transplant biopsy complications: assessment of risk factors and potential of desmopressin to decrease risk of hemorrhage.

Peters B, Nasic S, Jensen G, Stegmayr B.

Acta Radiol. 2020 Mar 25:284185120910590. doi: 10.1177/0284185120910590. [Epub ahead of print] No abstract available.


US nativity and dietary acculturation impact the gut microbiome in a diverse US population.

Peters BA, Yi SS, Beasley JM, Cobbs EN, Choi HS, Beggs DB, Hayes RB, Ahn J.

ISME J. 2020 Mar 24. doi: 10.1038/s41396-020-0630-6. [Epub ahead of print]


A Sequence Homology and Bioinformatic Approach Can Predict Candidate Targets for Immune Responses to SARS-CoV-2.

Grifoni A, Sidney J, Zhang Y, Scheuermann RH, Peters B, Sette A.

Cell Host Microbe. 2020 Mar 12. pii: S1931-3128(20)30166-9. doi: 10.1016/j.chom.2020.03.002. [Epub ahead of print]


Major Histocompatibility Complex Binding, Eluted Ligands, and Immunogenicity: Benchmark Testing and Predictions.

Paul S, Grifoni A, Peters B, Sette A.

Front Immunol. 2020 Feb 5;10:3151. doi: 10.3389/fimmu.2019.03151. eCollection 2019. Review.


Performing solvation free energy calculations in LAMMPS using the decoupling approach.

Khanna V, Monroe JI, Doherty MF, Peters B.

J Comput Aided Mol Des. 2020 Feb 28. doi: 10.1007/s10822-020-00303-3. [Epub ahead of print]


Current advances in tin cluster chemistry.

Peters B, Lichtenberger N, Dornsiepen E, Dehnen S.

Chem Sci. 2019 Oct 21;11(1):16-26. doi: 10.1039/c9sc04363b. eCollection 2020 Jan 7. Review.


Sleep, Fatigue and Burnout Among Physicians: An American Academy of Sleep Medicine Position Statement.

Kancherla BS, Upender R, Collen JF, Rishi MA, Sullivan SS, Ahmed O, Berneking M, Flynn-Evans EE, Peters BR, Abbasi-Feinberg F, Aurora RN, Carden KA, Kirsch DB, Kristo DA, Malhotra RK, Martin JL, Olson EJ, Ramar K, Rosen CL, Rowley JA, Shelgikar AV, Gurubhagavatula I.

J Clin Sleep Med. 2020 Feb 28. doi: 10.5664/jcsm.8408. [Epub ahead of print]


What is the role of sleep in physician burnout?

Kancherla BS, Upender R, Collen JF, Rishi MA, Sullivan SS, Ahmed O, Berneking M, Flynn-Evans EE, Peters BR, Gurubhagavatula I.

J Clin Sleep Med. 2020 Feb 28. doi: 10.5664/jcsm.8412. [Epub ahead of print]


Vulvovaginal Candidiasis: A Current Understanding and Burning Questions.

Willems HME, Ahmed SS, Liu J, Xu Z, Peters BM.

J Fungi (Basel). 2020 Feb 25;6(1). pii: E27. doi: 10.3390/jof6010027. Review.


T Cell Epitope Predictions.

Peters B, Nielsen M, Sette A.

Annu Rev Immunol. 2020 Feb 11. doi: 10.1146/annurev-immunol-082119-124838. [Epub ahead of print]


Identification of Plasmodium falciparum circumsporozoite protein-specific CD8+ T cell epitopes in a malaria exposed population.

Kusi KA, Aggor FE, Amoah LE, Anum D, Nartey Y, Amoako-Sakyi D, Obiri-Yeboah D, Hollingdale M, Ganeshan H, Belmonte M, Peters B, Kim Y, Tetteh J, Kyei-Baafour E, Dodoo D, Villasante E, Sedegah M.

PLoS One. 2020 Feb 10;15(2):e0228177. doi: 10.1371/journal.pone.0228177. eCollection 2020.


Age-related changes to the craniocervical ligaments in asymptomatic subjects: a prospective MR study.

Peters B, Parizel PM, Van Goethem JW.

Eur Spine J. 2020 Jan 24. doi: 10.1007/s00586-020-06302-0. [Epub ahead of print]


Melanotan II: a possible cause of renal infarction: review of the literature and case report.

Peters B, Hadimeri H, Wahlberg R, Afghahi H.

CEN Case Rep. 2020 Jan 18. doi: 10.1007/s13730-020-00447-z. [Epub ahead of print]


Response to Letter to the Editor "Hyponatremia may be an under-recognised complication after desmopressin to reduce uremic bleeding in kidney biopsy".

Peters B.

Nephrology (Carlton). 2020 Jan 16. doi: 10.1111/nep.13694. [Epub ahead of print] No abstract available.


Vascularized Pedicled Proximal Phalanx Flap for Spare Part for Reconstruction of Metacarpal Avulsion Injury.

McLeod GJ, Peters BR, Nguyen CM, Petropolis CJ.

Plast Reconstr Surg Glob Open. 2019 Nov 27;7(11):e2570. doi: 10.1097/GOX.0000000000002570. eCollection 2019 Nov.


Allergen-specific IgG+ memory B cells are temporally linked to IgE memory responses.

Hoof I, Schulten V, Layhadi JA, Stranzl T, Christensen LH, Herrera de la Mata S, Seumois G, Vijayanand P, Lundegaard C, Niss K, Lund A, Ahrenfeldt J, Holm J, Steveling E, Sharif H, Durham SR, Peters B, Shamji MH, Andersen PS.

J Allergy Clin Immunol. 2019 Dec 27. pii: S0091-6749(19)32602-8. doi: 10.1016/j.jaci.2019.11.046. [Epub ahead of print]


Molecular Signatures of Dengue Virus-Specific IL-10/IFN-γ Co-producing CD4 T Cells and Their Association with Dengue Disease.

Tian Y, Seumois G, De-Oliveira-Pinto LM, Mateus J, Herrera-de la Mata S, Kim C, Hinz D, Goonawardhana NDS, de Silva AD, Premawansa S, Premawansa G, Wijewickrama A, Balmaseda A, Grifoni A, Vijayanand P, Harris E, Peters B, Sette A, Weiskopf D.

Cell Rep. 2019 Dec 24;29(13):4482-4495.e4. doi: 10.1016/j.celrep.2019.11.098.


A Survival Guide for the "Electro-curious".

Kingston C, Palkowitz MD, Takahira Y, Vantourout JC, Peters BK, Kawamata Y, Baran PS.

Acc Chem Res. 2020 Jan 21;53(1):72-83. doi: 10.1021/acs.accounts.9b00539. Epub 2019 Dec 11.


Epitope-specific airway-resident CD4+ T cell dynamics during experimental human RSV infection.

Guvenel A, Jozwik A, Ascough S, Ung SK, Paterson S, Kalyan M, Gardener Z, Bergstrom E, Kar S, Habibi MS, Paras A, Zhu J, Park M, Dhariwal J, Almond M, Wong EH, Sykes A, Del Rosario J, Trujillo-Torralbo MB, Mallia P, Sidney J, Peters B, Kon OM, Sette A, Johnston SL, Openshaw PJ, Chiu C.

J Clin Invest. 2020 Jan 2;130(1):523-538. doi: 10.1172/JCI131696.


The IL-17R/IL-22R signaling axis is dispensable for vulvovaginal candidiasis regardless of estrogen status.

Peters BM, Coleman BM, Willems HME, Barker KS, Aggor FEY, Cipolla E, Verma AH, Bishu S, Huppler AH, Bruno VM, Gaffen SL.

J Infect Dis. 2019 Dec 5. pii: jiz649. doi: 10.1093/infdis/jiz649. [Epub ahead of print]


The Immune Epitope Database and Analysis Resource Program 2003-2018: reflections and outlook.

Martini S, Nielsen M, Peters B, Sette A.

Immunogenetics. 2020 Feb;72(1-2):57-76. doi: 10.1007/s00251-019-01137-6. Epub 2019 Nov 25. Review.


Defining clinical subgroups and genotype-phenotype correlations in NBAS-associated disease across 110 patients.

Staufner C, Peters B, Wagner M, Alameer S, Barić I, Broué P, Bulut D, Church JA, Crushell E, Dalgıç B, Das AM, Dick A, Dikow N, Dionisi-Vici C, Distelmaier F, Bozbulut NE, Feillet F, Gonzales E, Hadzic N, Hauck F, Hegarty R, Hempel M, Herget T, Klein C, Konstantopoulou V, Kopajtich R, Kuster A, Laass MW, Lainka E, Larson-Nath C, Leibner A, Lurz E, Mayr JA, McKiernan P, Mention K, Moog U, Mungan NO, Riedhammer KM, Santer R, Palafoll IV, Vockley J, Westphal DS, Wiedemann A, Wortmann SB, Diwan GD, Russell RB, Prokisch H, Garbade SF, Kölker S, Hoffmann GF, Lenz D.

Genet Med. 2020 Mar;22(3):610-621. doi: 10.1038/s41436-019-0698-4. Epub 2019 Nov 25.


Comparison of Polysorbate 80 Hydrolysis and Oxidation on the Aggregation of a Monoclonal Antibody.

Larson NR, Wei Y, Prajapati I, Chakraborty A, Peters B, Kalonia C, Hudak S, Choudhary S, Esfandiary R, Dhar P, Schöneich C, Middaugh CR.

J Pharm Sci. 2020 Jan;109(1):633-639. doi: 10.1016/j.xphs.2019.10.069. Epub 2019 Nov 20.


The Human Immunopeptidome Project: A Roadmap to Predict and Treat Immune Diseases.

Vizcaíno JA, Kubiniok P, Kovalchik KA, Ma Q, Duquette JD, Mongrain I, Deutsch EW, Peters B, Sette A, Sirois I, Caron E.

Mol Cell Proteomics. 2020 Jan;19(1):31-49. doi: 10.1074/mcp.R119.001743. Epub 2019 Nov 19.


The overdamped transmission coefficient: Recovering the true mean first passage time from an inaccurate reaction coordinate.

Yappert R, Kamat K, Peters B.

J Chem Phys. 2019 Nov 14;151(18):184108. doi: 10.1063/1.5117237.


Candida albicans Impacts Staphylococcus aureus Alpha-Toxin Production via Extracellular Alkalinization.

Todd OA, Noverr MC, Peters BM.

mSphere. 2019 Nov 13;4(6). pii: e00780-19. doi: 10.1128/mSphere.00780-19.


Cis/Trans Isomerization of Unsaturated Fatty Acids in Polysorbate 80 During Light Exposure of a Monoclonal Antibody-Containing Formulation.

Prajapati I, Peters BH, Larson NR, Wei Y, Choudhary S, Kalonia C, Hudak S, Esfandiary R, Middaugh CR, Schöneich C.

J Pharm Sci. 2020 Jan;109(1):603-613. doi: 10.1016/j.xphs.2019.10.068. Epub 2019 Nov 9.


Second-Generation Antidiabetic Sulfonylureas Inhibit Candida albicans and Candidalysin-Mediated Activation of the NLRP3 Inflammasome.

Lowes DJ, Hevener KE, Peters BM.

Antimicrob Agents Chemother. 2020 Jan 27;64(2). pii: e01777-19. doi: 10.1128/AAC.01777-19. Print 2020 Jan 27.


Identifying inaccuracies in gene expression estimates from unstranded RNA-seq data.

Pomaznoy M, Sethi A, Greenbaum J, Peters B.

Sci Rep. 2019 Nov 8;9(1):16342. doi: 10.1038/s41598-019-52584-w.


TCRpMHCmodels: Structural modelling of TCR-pMHC class I complexes.

Jensen KK, Rantos V, Jappe EC, Olsen TH, Jespersen MC, Jurtz V, Jessen LE, Lanzarotti E, Mahajan S, Peters B, Nielsen M, Marcatili P.

Sci Rep. 2019 Oct 10;9(1):14530. doi: 10.1038/s41598-019-50932-4.


Benchmark datasets of immune receptor-epitope structural complexes.

Mahajan S, Yan Z, Jespersen MC, Jensen KK, Marcatili P, Nielsen M, Sette A, Peters B.

BMC Bioinformatics. 2019 Oct 10;20(1):490. doi: 10.1186/s12859-019-3109-6.


Relating the gut metagenome and metatranscriptome to immunotherapy responses in melanoma patients.

Peters BA, Wilson M, Moran U, Pavlick A, Izsak A, Wechter T, Weber JS, Osman I, Ahn J.

Genome Med. 2019 Oct 9;11(1):61. doi: 10.1186/s13073-019-0672-4.


Single-Cell Transcriptome Analysis of Uniparental Embryos Reveals Parent-of-Origin Effects on Human Preimplantation Development.

Leng L, Sun J, Huang J, Gong F, Yang L, Zhang S, Yuan X, Fang F, Xu X, Luo Y, Bolund L, Peters BA, Lu G, Jiang T, Xu F, Lin G.

Cell Stem Cell. 2019 Nov 7;25(5):697-712.e6. doi: 10.1016/j.stem.2019.09.004. Epub 2019 Oct 3.


Visual objects interact differently during encoding and memory maintenance.

Czoschke S, Peters B, Rahm B, Kaiser J, Bledowski C.

Atten Percept Psychophys. 2019 Sep 6. doi: 10.3758/s13414-019-01861-x. [Epub ahead of print]


Candida albicans and Staphylococcus aureus Pathogenicity and Polymicrobial Interactions: Lessons beyond Koch's Postulates.

Todd OA, Peters BM.

J Fungi (Basel). 2019 Sep 4;5(3). pii: E81. doi: 10.3390/jof5030081. Review.


Perceptions of romantic partners' emotional suppression are more biased than accurate.

Peters BJ, Overall NC.

Emotion. 2019 Sep 5. doi: 10.1037/emo0000679. [Epub ahead of print]


Fungi form interkingdom microbial communities in the primordial human gut that develop with gestational age.

Willis KA, Purvis JH, Myers ED, Aziz MM, Karabayir I, Gomes CK, Peters BM, Akbilgic O, Talati AJ, Pierre JF.

FASEB J. 2019 Nov;33(11):12825-12837. doi: 10.1096/fj.201901436RR. Epub 2019 Aug 31.


A survey of known immune epitopes in the enteroviruses strains associated with acute flaccid myelitis.

Grifoni A, Mahajan S, Sidney J, Martini S, Scheuermann RH, Peters B, Sette A.

Hum Immunol. 2019 Nov;80(11):923-929. doi: 10.1016/j.humimm.2019.08.004. Epub 2019 Aug 23.


Evaluation of baiting fipronil-loaded silica nanocapsules against termite colonies in fields.

Peters BC, Wibowo D, Yang GZ, Hui Y, Middelberg APJ, Zhao CX.

Heliyon. 2019 Aug 10;5(8):e02277. doi: 10.1016/j.heliyon.2019.e02277. eCollection 2019 Aug.


De novo mutations in mitochondrial DNA of iPSCs produce immunogenic neoepitopes in mice and humans.

Deuse T, Hu X, Agbor-Enoh S, Koch M, Spitzer MH, Gravina A, Alawi M, Marishta A, Peters B, Kosaloglu-Yalcin Z, Yang Y, Rajalingam R, Wang D, Nashan B, Kiefmann R, Reichenspurner H, Valantine H, Weissman IL, Schrepfer S.

Nat Biotechnol. 2019 Oct;37(10):1137-1144. doi: 10.1038/s41587-019-0227-7. Epub 2019 Aug 19.


Cumulative Antenatal Risk and Kindergarten Readiness in Preterm-Born Preschoolers.

Heitzer AM, Piercy JC, Peters BN, Mattes AM, Klarr JM, Batton B, Ofen N, Raz S.

J Abnorm Child Psychol. 2020 Jan;48(1):1-12. doi: 10.1007/s10802-019-00577-8.


Disparate Candida albicans Biofilm Formation in Clinical Lipid Emulsions Due to Capric Acid-Mediated Inhibition.

Willems HME, Stultz JS, Coltrane ME, Fortwendel JP, Peters BM.

Antimicrob Agents Chemother. 2019 Oct 22;63(11). pii: e01394-19. doi: 10.1128/AAC.01394-19. Print 2019 Nov.


Restricted myeloperoxidase epitopes drive the adaptive immune response in MPO-ANCA vasculitis.

Free ME, Stember KG, Hess JJ, McInnis EA, Lardinois O, Hogan SL, Hu Y, Mendoza C, Le AK, Guseman AJ, Pilkinton MA, Bortone DS, Cowens K, Sidney J, Karosiene E, Peters B, James E, Kwok WW, Vincent BG, Mallal SA, Jennette JC, Ciavatta DJ, Falk RJ.

J Autoimmun. 2020 Jan;106:102306. doi: 10.1016/j.jaut.2019.102306. Epub 2019 Aug 2.


Does expressing emotions enhance perceptual accuracy of negative emotions during relationship interactions?

Overall NC, Clark MS, Fletcher GJO, Peters BJ, Chang VT.

Emotion. 2020 Apr;20(3):353-367. doi: 10.1037/emo0000653. Epub 2019 Aug 1.


A Modified Injector and Sample Acquisition Protocol Can Improve Data Quality and Reduce Inter-Instrument Variability of the Helios Mass Cytometer.

Lee BH, Kelly G, Bradford S, Davila M, Guo XV, Amir ED, Thrash EM, Solga MD, Lannigan J, Sellers B, Candia J, Tsang J, Montgomery RR, Tamaki SJ, Sigdel TK, Sarwal MM, Lanier LL, Tian Y, Kim C, Hinz D, Peters B, Sette A, Rahman AH.

Cytometry A. 2019 Sep;95(9):1019-1030. doi: 10.1002/cyto.a.23866. Epub 2019 Jul 30.


Characterization of Magnitude and Antigen Specificity of HLA-DP, DQ, and DRB3/4/5 Restricted DENV-Specific CD4+ T Cell Responses.

Grifoni A, Moore E, Voic H, Sidney J, Phillips E, Jadi R, Mallal S, De Silva AD, De Silva AM, Peters B, Weiskopf D, Sette A.

Front Immunol. 2019 Jul 5;10:1568. doi: 10.3389/fimmu.2019.01568. eCollection 2019.


Morphologic Analysis of the Carpal Tunnel and Median Nerve Following Open and Endoscopic Carpal Tunnel Release.

Peters BR, Martin AM, Memauri BF, Bock HW, Turner RB, Murray KA, Islur A.

Hand (N Y). 2019 Jul 23:1558944719861711. doi: 10.1177/1558944719861711. [Epub ahead of print]


Incense Burning is Associated with Human Oral Microbiota Composition.

Vallès Y, Inman CK, Peters BA, Wareth LA, Abdulle A, Alsafar H, Anouti FA, Dhaheri AA, Galani D, Haji M, Hamiz AA, Hosani AA, Houqani MA, Aljunaibi A, Kazim M, Kirchhoff T, Mahmeed WA, Maskari FA, Alnaeemi A, Oumeziane N, Ramasamy R, Schmidt AM, Vallès H, Zaabi EA, Sherman S, Ali R, Ahn J, Hayes RB.

Sci Rep. 2019 Jul 11;9(1):10039. doi: 10.1038/s41598-019-46353-y.

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