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Incense Burning is Associated with Human Oral Microbiota Composition.

Vallès Y, Inman CK, Peters BA, Wareth LA, Abdulle A, Alsafar H, Anouti FA, Dhaheri AA, Galani D, Haji M, Hamiz AA, Hosani AA, Houqani MA, Aljunaibi A, Kazim M, Kirchhoff T, Mahmeed WA, Maskari FA, Alnaeemi A, Oumeziane N, Ramasamy R, Schmidt AM, Vallès H, Zaabi EA, Sherman S, Ali R, Ahn J, Hayes RB.

Sci Rep. 2019 Jul 11;9(1):10039. doi: 10.1038/s41598-019-46353-y.


Differential trajectories of memory quality and guessing across sequential reports from working memory.

Peters B, Rahm B, Kaiser J, Bledowski C.

J Vis. 2019 Jul 1;19(7):3. doi: 10.1167/19.7.3.


Reporting and connecting cell type names and gating definitions through ontologies.

Overton JA, Vita R, Dunn P, Burel JG, Bukhari SAC, Cheung KH, Kleinstein SH, Diehl AD, Peters B.

BMC Bioinformatics. 2019 Apr 25;20(Suppl 5):182. doi: 10.1186/s12859-019-2725-5.


Analysis of Allergen-Specific T Cell and IgE Reactivity to Different Preparations of Cow's Milk-Containing Food Extracts.

Chen M, Sutherland A, Birrueta G, Laubach S, Leonard S, Peters B, Schulten V.

Cells. 2019 Jul 2;8(7). pii: E667. doi: 10.3390/cells8070667.


MOGSA: integrative single sample gene-set analysis of multiple omics data.

Meng C, Basunia A, Peters B, Moghaddas Gholami A, Kuster B, Culhane AC.

Mol Cell Proteomics. 2019 Jun 26. pii: mcp.TIR118.001251. doi: 10.1074/mcp.TIR118.001251. [Epub ahead of print]


Circulating T cell-monocyte complexes are markers of immune perturbations.

Burel JG, Pomaznoy M, Lindestam Arlehamn CS, Weiskopf D, da Silva Antunes R, Jung Y, Babor M, Schulten V, Seumois G, Greenbaum JA, Premawansa S, Premawansa G, Wijewickrama A, Vidanagama D, Gunasena B, Tippalagama R, deSilva AD, Gilman RH, Saito M, Taplitz R, Ley K, Vijayanand P, Sette A, Peters B.

Elife. 2019 Jun 25;8. pii: e46045. doi: 10.7554/eLife.46045.


Effect of Iron Oxide Nanoparticles on the Oxidation and Secondary Structure of Growth Hormone.

Varkhede N, Peters BH, Wei Y, Middaugh CR, Schöneich C, Forrest ML.

J Pharm Sci. 2019 Jun 16. pii: S0022-3549(19)30377-6. doi: 10.1016/j.xphs.2019.06.007. [Epub ahead of print]


Do habitual emotional suppression measures predict response-focused situational suppression during social interactions?

Peters BJ, Overall NC, Cameron LD, Hammond MD, Low RST, Girme YU.

Emotion. 2019 Jun 13. doi: 10.1037/emo0000620. [Epub ahead of print]


Ionic liquid cations as methylation agent for extremely weak chalcogenido metalate nucleophiles.

Peters B, Santner S, Donsbach C, Vöpel P, Smarsly B, Dehnen S.

Chem Sci. 2019 Apr 22;10(20):5211-5217. doi: 10.1039/c9sc01358j. eCollection 2019 May 28.


Female patients are less satisfied with biological treatment for psoriasis and experience more side-effects than male patients: results from the prospective BioCAPTURE registry.

van der Schoot LS, van den Reek JMPA, Groenewoud JMM, Otero ME, Njoo MD, Ossenkoppele PM, Mommers JM, Koetsier MIA, Berends MAM, Arnold WP, Peters B, Andriessen MPM, Den Hengst CW, Kuijpers ALA, de Jong EMGJ.

J Eur Acad Dermatol Venereol. 2019 Jun 8. doi: 10.1111/jdv.15733. [Epub ahead of print]


Candida albicans Augments Staphylococcus aureus Virulence by Engaging the Staphylococcal agr Quorum Sensing System.

Todd OA, Fidel PL Jr, Harro JM, Hilliard JJ, Tkaczyk C, Sellman BR, Noverr MC, Peters BM.

MBio. 2019 Jun 4;10(3). pii: e00910-19. doi: 10.1128/mBio.00910-19.


IEDB-AR: immune epitope database-analysis resource in 2019.

Dhanda SK, Mahajan S, Paul S, Yan Z, Kim H, Jespersen MC, Jurtz V, Andreatta M, Greenbaum JA, Marcatili P, Sette A, Nielsen M, Peters B.

Nucleic Acids Res. 2019 Jul 2;47(W1):W502-W506. doi: 10.1093/nar/gkz452.


An ATAC-seq atlas of chromatin accessibility in mouse tissues.

Liu C, Wang M, Wei X, Wu L, Xu J, Dai X, Xia J, Cheng M, Yuan Y, Zhang P, Li J, Feng T, Chen A, Zhang W, Chen F, Shang Z, Zhang X, Peters BA, Liu L.

Sci Data. 2019 May 20;6(1):65. doi: 10.1038/s41597-019-0071-0.


The effect of the CYP2D6 genotype on the maintenance dose of metoprolol in a chronic Dutch patient population.

Poulussen FCP, Peters BJ, Hua KH, Houthuizen P, Grouls RJ, Deenen MJ.

Pharmacogenet Genomics. 2019 May 15. doi: 10.1097/FPC.0000000000000381. [Epub ahead of print]


Widespread Tau-Specific CD4 T Cell Reactivity in the General Population.

Lindestam Arlehamn CS, Pham J, Alcalay RN, Frazier A, Shorr E, Carpenter C, Sidney J, Dhanwani R, Agin-Liebes J, Garretti F, Amara AW, Standaert DG, Phillips EJ, Mallal SA, Peters B, Sulzer D, Sette A.

J Immunol. 2019 Jul 1;203(1):84-92. doi: 10.4049/jimmunol.1801506. Epub 2019 May 13.


Screening for Vestibular Disorders Using the Modified Clinical Test of Sensory Interaction and Balance and Tandem Walking With Eyes Closed.

Cohen HS, Mulavara AP, Stitz J, Sangi-Haghpeykar H, Williams SP, Peters BT, Bloomberg JJ.

Otol Neurotol. 2019 Jun;40(5):658-665. doi: 10.1097/MAO.0000000000002173.


Silymarin protects against radiocontrast-induced nephropathy in mice.

de Souza Santos V, Peters B, Côco LZ, Alves GM, de Assis ALEM, Nogueira BV, Meyrelles SS, Porto ML, Vasquez EC, Campagnaro BP, Pereira TMC.

Life Sci. 2019 Jul 1;228:305-315. doi: 10.1016/j.lfs.2019.04.061. Epub 2019 Apr 29.


Characterization and epitope identification of the T cell response in non-allergic individuals exposed to mouse allergen.

Grifoni A, da Silva Antunes R, Westernberg L, Pham J, Birrueta G, Peters B, Sette A, Schulten V.

World Allergy Organ J. 2019 Apr 20;12(4):100026. doi: 10.1016/j.waojou.2019.100026. eCollection 2019.


Childhood epilepsy with a small number of seizures may be left untreated: an international prospective study.

Arts WF, Geerts AT, Brouwer OF, van Donselaar CA, Stroink H, Peters BA, Peeters EA, Camfield P, Camfield C.

Epileptic Disord. 2019 Apr 1;21(2):141-153. doi: 10.1684/epd.2019.1040.


Reduced biventricular volumes and myocardial dysfunction long-term after pediatric heart transplantation assessed by CMR.

Latus H, Hachmann P, Voges I, Mueller S, Gummel K, Reich B, Sarikouch S, Peters B, Mazhari N, Behnke-Hall K, Jux C, Apitz C, Thul J, Akintuerk H, Bauer J, Schranz D.

Transplantation. 2019 Apr 4. doi: 10.1097/TP.0000000000002738. [Epub ahead of print]


Industrial Regulation of Fatigue: Lessons Learned From Aviation.

Flynn-Evans EE, Ahmed O, Berneking M, Collen JF, Kancherla BS, Peters BR, Rishi MA, Sullivan SS, Upender R, Gurubhagavatula I; American Academy of Sleep Medicine Public Safety Committee.

J Clin Sleep Med. 2019 Apr 15;15(4):537-538. doi: 10.5664/jcsm.7704. No abstract available.


Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping, and de novo assembly.

Wang O, Chin R, Cheng X, Wu MKY, Mao Q, Tang J, Sun Y, Anderson E, Lam HK, Chen D, Zhou Y, Wang L, Fan F, Zou Y, Xie Y, Zhang RY, Drmanac S, Nguyen D, Xu C, Villarosa C, Gablenz S, Barua N, Nguyen S, Tian W, Liu JS, Wang J, Liu X, Qi X, Chen A, Wang H, Dong Y, Zhang W, Alexeev A, Yang H, Wang J, Kristiansen K, Xu X, Drmanac R, Peters BA.

Genome Res. 2019 May;29(5):798-808. doi: 10.1101/gr.245126.118. Epub 2019 Apr 2.


Habitat explains patterns of population decline for an invasive crayfish.

Larson ER, Kreps TA, Peters B, Peters JA, Lodge DM.

Ecology. 2019 May;100(5):e02659. doi: 10.1002/ecy.2659. Epub 2019 Mar 28.


Results of a nationwide hospice and palliative care social work job analysis.

Head B, Peters B, Middleton A, Friedman C, Guman N.

J Soc Work End Life Palliat Care. 2019 Jan-Mar;15(1):16-33. doi: 10.1080/15524256.2019.1577326. Epub 2019 Mar 20.


Variability in German Cockroach Extract Composition Greatly Impacts T Cell Potency in Cockroach-Allergic Donors.

Birrueta G, Frazier A, Pomés A, Glesner J, Filep S, Schal C, Jeong KY, McMurtrey C, Vander Schans T, Hildebrand WH, Busse P, Beigelman A, Bacharier LB, Peters B, Sette A, Schulten V.

Front Immunol. 2019 Feb 27;10:313. doi: 10.3389/fimmu.2019.00313. eCollection 2019.


Dengue-specific CD8+ T cell subsets display specialized transcriptomic and TCR profiles.

Tian Y, Babor M, Lane J, Seumois G, Liang S, Goonawardhana NDS, De Silva AD, Phillips EJ, Mallal SA, da Silva Antunes R, Grifoni A, Vijayanand P, Weiskopf D, Peters B, Sette A.

J Clin Invest. 2019 Mar 18;130:1727-1741. doi: 10.1172/JCI123726. eCollection 2019 Mar 18.


Pathophysiological responses of pine defensive metabolites largely lack differences between pine species but vary with eliciting ophiostomatoid fungal species.

Cale JA, Klutsch JG, Dykstra CB, Peters B, Erbilgin N.

Tree Physiol. 2019 Mar 16. pii: tpz012. doi: 10.1093/treephys/tpz012. [Epub ahead of print]


Treatment of oncogene-driven non-small cell lung cancer.

Kastelijn EA, de Langen AJ, Peters BJM.

Curr Opin Pulm Med. 2019 May;25(3):300-307. doi: 10.1097/MCP.0000000000000572.


Antibody Specific B-Cell Epitope Predictions: Leveraging Information From Antibody-Antigen Protein Complexes.

Jespersen MC, Mahajan S, Peters B, Nielsen M, Marcatili P.

Front Immunol. 2019 Feb 26;10:298. doi: 10.3389/fimmu.2019.00298. eCollection 2019.


Host Transcriptomics as a Tool to Identify Diagnostic and Mechanistic Immune Signatures of Tuberculosis.

Burel JG, Babor M, Pomaznoy M, Lindestam Arlehamn CS, Khan N, Sette A, Peters B.

Front Immunol. 2019 Feb 19;10:221. doi: 10.3389/fimmu.2019.00221. eCollection 2019. Review.


Scalable and safe synthetic organic electroreduction inspired by Li-ion battery chemistry.

Peters BK, Rodriguez KX, Reisberg SH, Beil SB, Hickey DP, Kawamata Y, Collins M, Starr J, Chen L, Udyavara S, Klunder K, Gorey TJ, Anderson SL, Neurock M, Minteer SD, Baran PS.

Science. 2019 Feb 22;363(6429):838-845. doi: 10.1126/science.aav5606.


Investigating Substrate Analogues for Mycobacterial MenJ: Truncated and Partially Saturated Menaquinones.

Koehn JT, Beuning CN, Peters BJ, Dellinger SK, Van Cleave C, Crick DC, Crans DC.

Biochemistry. 2019 Mar 26;58(12):1596-1615. doi: 10.1021/acs.biochem.9b00007. Epub 2019 Mar 6.


Reducing risk of Type 2 diabetes in HIV: a mixed-methods investigation of the STOP-Diabetes diet and physical activity intervention.

Duncan AD, Peters BS, Rivas C, Goff LM.

Diabet Med. 2019 Feb 7. doi: 10.1111/dme.13927. [Epub ahead of print]


The Microbiome in Lung Cancer Tissue and Recurrence-Free Survival.

Peters BA, Hayes RB, Goparaju C, Reid C, Pass HI, Ahn J.

Cancer Epidemiol Biomarkers Prev. 2019 Apr;28(4):731-740. doi: 10.1158/1055-9965.EPI-18-0966. Epub 2019 Feb 7.


Biofilm Formation of Staphylococcus aureus under Food Heat Processing Conditions: First Report on CML Production within Biofilm.

Miao J, Lin S, Soteyome T, Peters BM, Li Y, Chen H, Su J, Li L, Li B, Xu Z, Shirtliff ME, Harro JM.

Sci Rep. 2019 Feb 4;9(1):1312. doi: 10.1038/s41598-018-35558-2.


Most viral peptides displayed by class I MHC on infected cells are immunogenic.

Croft NP, Smith SA, Pickering J, Sidney J, Peters B, Faridi P, Witney MJ, Sebastian P, Flesch IEA, Heading SL, Sette A, La Gruta NL, Purcell AW, Tscharke DC.

Proc Natl Acad Sci U S A. 2019 Feb 19;116(8):3112-3117. doi: 10.1073/pnas.1815239116. Epub 2019 Feb 4.


Re-boost immunizations with the peptide-based therapeutic HIV vaccine, Vacc-4x, restores geometric mean viral load set-point during treatment interruption.

Rockstroh JK, Asmuth D, Pantaleo G, Clotet B, Podzamczer D, van Lunzen J, Arastéh K, Mitsuyasu R, Peters B, Silvia N, Jolliffe D, Ökvist M, Krogsgaard K, Sommerfelt MA.

PLoS One. 2019 Jan 30;14(1):e0210965. doi: 10.1371/journal.pone.0210965. eCollection 2019.


Significant abundance of cis configurations of coding variants in diploid human genomes.

Hoehe MR, Herwig R, Mao Q, Peters BA, Drmanac R, Church GM, Huebsch T.

Nucleic Acids Res. 2019 Apr 8;47(6):2981-2995. doi: 10.1093/nar/gkz031.


Long-term results after surgical repair of atrioventricular septal defect.

Schleiger A, Miera O, Peters B, Schmitt KRL, Kramer P, Buracionok J, Murin P, Cho MY, Photiadis J, Berger F, Ovroutski S.

Interact Cardiovasc Thorac Surg. 2018 Dec 22. doi: 10.1093/icvts/ivy334. [Epub ahead of print]


Investigation of Outbreak-Specific Nonsynonymous Mutations on Ebolavirus GP in the Context of Known Immune Reactivity.

Vaughan K, Xu X, Peters B, Sette A.

J Immunol Res. 2018 Nov 15;2018:1846207. doi: 10.1155/2018/1846207. eCollection 2018.


A Review on T Cell Epitopes Identified Using Prediction and Cell-Mediated Immune Models for Mycobacterium tuberculosis and Bordetella pertussis.

Tian Y, da Silva Antunes R, Sidney J, Lindestam Arlehamn CS, Grifoni A, Dhanda SK, Paul S, Peters B, Weiskopf D, Sette A.

Front Immunol. 2018 Nov 29;9:2778. doi: 10.3389/fimmu.2018.02778. eCollection 2018. Review.


GOnet: a tool for interactive Gene Ontology analysis.

Pomaznoy M, Ha B, Peters B.

BMC Bioinformatics. 2018 Dec 7;19(1):470. doi: 10.1186/s12859-018-2533-3.


Gibbs free-energy differences between polymorphs via a diabat approach.

Kamat K, Peters B.

J Chem Phys. 2018 Dec 7;149(21):214106. doi: 10.1063/1.5051448.


S-shaped Kidney: A Rare Occurrence of Supernumerary Kidney with Fusion-malrotation.

Mebis W, Peters B, van der Zijden T.

J Belg Soc Radiol. 2018 Nov 23;102(1):73. doi: 10.5334/jbsr.1666. No abstract available.


Epitope Specific Antibodies and T Cell Receptors in the Immune Epitope Database.

Mahajan S, Vita R, Shackelford D, Lane J, Schulten V, Zarebski L, Jespersen MC, Marcatili P, Nielsen M, Sette A, Peters B.

Front Immunol. 2018 Nov 20;9:2688. doi: 10.3389/fimmu.2018.02688. eCollection 2018.


Systematic evaluation of the efficacy-effectiveness gap of systemic treatments in metastatic nonsmall cell lung cancer.

Cramer-van der Welle CM, Peters BJM, Schramel FMNH, Klungel OH, Groen HJM, van de Garde EMW; Santeon NSCLC Study Group; Santeon NSCLC study group.

Eur Respir J. 2018 Dec 20;52(6). pii: 1801100. doi: 10.1183/13993003.01100-2018. Print 2018 Dec.


Microbial virulence, molecular epidemiology and pathogenic factors of fluoroquinolone-resistant Haemophilus influenzae infections in Guangzhou, China.

Chen D, Wen S, Feng D, Xu R, Liu J, Peters BM, Su D, Lin Y, Yang L, Xu Z, Shirtliff ME.

Ann Clin Microbiol Antimicrob. 2018 Nov 23;17(1):41. doi: 10.1186/s12941-018-0290-9.


Effect of plasma exchange on antifactor Xa activity of enoxaparin and serum levetiracetam levels.

Peters BJ, Hofer M, Daniels CE, Winters JL.

Am J Health Syst Pharm. 2018 Dec 1;75(23):1883-1888. doi: 10.2146/ajhp170885.


Impact of Genetic Polymorphisms on Human Immune Cell Gene Expression.

Schmiedel BJ, Singh D, Madrigal A, Valdovino-Gonzalez AG, White BM, Zapardiel-Gonzalo J, Ha B, Altay G, Greenbaum JA, McVicker G, Seumois G, Rao A, Kronenberg M, Peters B, Vijayanand P.

Cell. 2018 Nov 29;175(6):1701-1715.e16. doi: 10.1016/j.cell.2018.10.022. Epub 2018 Nov 15.


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