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Items: 1 to 50 of 85

1.

Viscoelastic properties of vimentin originate from nonequilibrium conformational changes.

Block J, Witt H, Candelli A, Danes JC, Peterman EJG, Wuite GJL, Janshoff A, Köster S.

Sci Adv. 2018 Jun 13;4(6):eaat1161. doi: 10.1126/sciadv.aat1161. eCollection 2018 Jun.

2.

A polarized view on DNA under tension.

van Mameren J, Vermeulen K, Wuite GJL, Peterman EJG.

J Chem Phys. 2018 Mar 28;148(12):123306. doi: 10.1063/1.5004019.

PMID:
29604805
3.

Two distinct conformational states define the interaction of human RAD51-ATP with single-stranded DNA.

Brouwer I, Moschetti T, Candelli A, Garcin EB, Modesti M, Pellegrini L, Wuite GJ, Peterman EJ.

EMBO J. 2018 Apr 3;37(7). pii: e98162. doi: 10.15252/embj.201798162. Epub 2018 Mar 5.

4.

Quantifying Local Molecular Tension Using Intercalated DNA Fluorescence.

King GA, Biebricher AS, Heller I, Peterman EJG, Wuite GJL.

Nano Lett. 2018 Apr 11;18(4):2274-2281. doi: 10.1021/acs.nanolett.7b04842. Epub 2018 Mar 9.

5.

Hyperstretching DNA.

Schakenraad K, Biebricher AS, Sebregts M, Ten Bensel B, Peterman EJG, Wuite GJL, Heller I, Storm C, van der Schoot P.

Nat Commun. 2017 Dec 19;8(1):2197. doi: 10.1038/s41467-017-02396-1.

6.

Programming the mechanics of cohesive fiber networks by compression.

Vos BE, Liebrand LC, Vahabi M, Biebricher A, Wuite GJL, Peterman EJG, Kurniawan NA, MacKintosh FC, Koenderink GH.

Soft Matter. 2017 Dec 6;13(47):8886-8893. doi: 10.1039/c7sm01393k.

PMID:
29057402
7.

Single-Molecule Fluorescence Microscopy in Living Caenorhabditis elegans.

van Krugten J, Peterman EJG.

Methods Mol Biol. 2018;1665:145-154. doi: 10.1007/978-1-4939-7271-5_8.

PMID:
28940068
8.

A Brief Introduction to Single-Molecule Fluorescence Methods.

van den Wildenberg SMJL, Prevo B, Peterman EJG.

Methods Mol Biol. 2018;1665:93-113. doi: 10.1007/978-1-4939-7271-5_5.

PMID:
28940065
9.

Intraflagellar transport: mechanisms of motor action, cooperation, and cargo delivery.

Prevo B, Scholey JM, Peterman EJG.

FEBS J. 2017 Sep;284(18):2905-2931. doi: 10.1111/febs.14068. Epub 2017 Apr 18. Review.

PMID:
28342295
10.

Corrigendum: Sliding sleeves of XRCC4-XLF bridge DNA and connect fragments of broken DNA.

Brouwer I, Sitters G, Candelli A, Heerema SJ, Heller I, Melo de AJ, Zhang H, Normanno D, Modesti M, Peterman EJ, Wuite GJ.

Nature. 2017 Mar 30;543(7647):742. doi: 10.1038/nature22028. Epub 2017 Mar 22. No abstract available.

PMID:
28329769
11.

Human RAD52 Captures and Holds DNA Strands, Increases DNA Flexibility, and Prevents Melting of Duplex DNA: Implications for DNA Recombination.

Brouwer I, Zhang H, Candelli A, Normanno D, Peterman EJG, Wuite GJL, Modesti M.

Cell Rep. 2017 Mar 21;18(12):2845-2853. doi: 10.1016/j.celrep.2017.02.068.

12.

Single-molecule observation of DNA compaction by meiotic protein SYCP3.

Syrjänen JL, Heller I, Candelli A, Davies OR, Peterman EJ, Wuite GJ, Pellegrini L.

Elife. 2017 Mar 13;6. pii: e22582. doi: 10.7554/eLife.22582.

13.

Switching between Exonucleolysis and Replication by T7 DNA Polymerase Ensures High Fidelity.

Hoekstra TP, Depken M, Lin SN, Cabanas-Danés J, Gross P, Dame RT, Peterman EJG, Wuite GJL.

Biophys J. 2017 Feb 28;112(4):575-583. doi: 10.1016/j.bpj.2016.12.044.

14.

Ensemble and single-molecule dynamics of IFT dynein in Caenorhabditis elegans cilia.

Mijalkovic J, Prevo B, Oswald F, Mangeol P, Peterman EJ.

Nat Commun. 2017 Feb 23;8:14591. doi: 10.1038/ncomms14591.

15.

Nonlinear Loading-Rate-Dependent Force Response of Individual Vimentin Intermediate Filaments to Applied Strain.

Block J, Witt H, Candelli A, Peterman EJ, Wuite GJ, Janshoff A, Köster S.

Phys Rev Lett. 2017 Jan 27;118(4):048101. doi: 10.1103/PhysRevLett.118.048101. Epub 2017 Jan 24.

PMID:
28186786
16.

Recent Advances in Biological Single-Molecule Applications of Optical Tweezers and Fluorescence Microscopy.

Hashemi Shabestari M, Meijering AEC, Roos WH, Wuite GJL, Peterman EJG.

Methods Enzymol. 2017;582:85-119. doi: 10.1016/bs.mie.2016.09.047. Epub 2016 Dec 12.

PMID:
28062046
17.

Probing DNA-DNA Interactions with a Combination of Quadruple-Trap Optical Tweezers and Microfluidics.

Brouwer I, King GA, Heller I, Biebricher AS, Peterman EJG, Wuite GJL.

Methods Mol Biol. 2017;1486:275-293. doi: 10.1007/978-1-4939-6421-5_10.

PMID:
27844432
18.

Versatile Quadruple-Trap Optical Tweezers for Dual DNA Experiments.

Heller I, Laurens N, Vorselen D, Broekmans OD, Biebricher AS, King GA, Brouwer I, Wuite GJL, Peterman EJG.

Methods Mol Biol. 2017;1486:257-272. doi: 10.1007/978-1-4939-6421-5_9.

PMID:
27844431
19.

High-resolution real-time dual-view imaging with multiple point of view microscopy.

Mangeol P, Peterman EJ.

Biomed Opt Express. 2016 Aug 24;7(9):3631-3642. eCollection 2016 Sep 1.

20.

Fibrin Networks Support Recurring Mechanical Loads by Adapting their Structure across Multiple Scales.

Kurniawan NA, Vos BE, Biebricher A, Wuite GJ, Peterman EJ, Koenderink GH.

Biophys J. 2016 Sep 6;111(5):1026-34. doi: 10.1016/j.bpj.2016.06.034.

21.

Optical Pushing: A Tool for Parallelized Biomolecule Manipulation.

Sitters G, Laurens N, de Rijk E, Kress H, Peterman EJG, Wuite GJL.

Biophys J. 2016 Jul 26;111(2):463. doi: 10.1016/j.bpj.2016.07.007. Epub 2016 Jul 26. No abstract available.

22.

Sliding sleeves of XRCC4-XLF bridge DNA and connect fragments of broken DNA.

Brouwer I, Sitters G, Candelli A, Heerema SJ, Heller I, de Melo AJ, Zhang H, Normanno D, Modesti M, Peterman EJ, Wuite GJ.

Nature. 2016 Jul 28;535(7613):566-9. doi: 10.1038/nature18643. Epub 2016 Jul 20. Erratum in: Nature. 2017 Mar 30;543(7647):742.

PMID:
27437582
23.

Why motor proteins team up - Intraflagellar transport in C. elegans cilia.

Mijalkovic J, Prevo B, Peterman EJ.

Worm. 2016 Mar 30;5(2):e1170275. doi: 10.1080/21624054.2016.1170275. eCollection 2016 Apr-Jun.

24.

Unravelling the structural plasticity of stretched DNA under torsional constraint.

King GA, Peterman EJ, Wuite GJ.

Nat Commun. 2016 Jun 6;7:11810. doi: 10.1038/ncomms11810.

25.

Tuning the Music: Acoustic Force Spectroscopy (AFS) 2.0.

Kamsma D, Creyghton R, Sitters G, Wuite GJ, Peterman EJ.

Methods. 2016 Aug 1;105:26-33. doi: 10.1016/j.ymeth.2016.05.002. Epub 2016 May 6.

PMID:
27163865
26.

KymographClear and KymographDirect: two tools for the automated quantitative analysis of molecular and cellular dynamics using kymographs.

Mangeol P, Prevo B, Peterman EJ.

Mol Biol Cell. 2016 Jun 15;27(12):1948-57. doi: 10.1091/mbc.E15-06-0404. Epub 2016 Apr 20.

27.

MreB-Dependent Organization of the E. coli Cytoplasmic Membrane Controls Membrane Protein Diffusion.

Oswald F, Varadarajan A, Lill H, Peterman EJ, Bollen YJ.

Biophys J. 2016 Mar 8;110(5):1139-49. doi: 10.1016/j.bpj.2016.01.010.

28.

Motor proteins: Kinesin's gait captured.

Peterman EJ.

Nat Chem Biol. 2016 Apr;12(4):206-7. doi: 10.1038/nchembio.2038. Epub 2016 Feb 29. No abstract available.

PMID:
26928934
29.

Optical Pushing: A Tool for Parallelized Biomolecule Manipulation.

Sitters G, Laurens N, de Rijk EJ, Kress H, Peterman EJ, Wuite GJ.

Biophys J. 2016 Jan 5;110(1):44-50. doi: 10.1016/j.bpj.2015.11.028.

30.

Functional differentiation of cooperating kinesin-2 motors orchestrates cargo import and transport in C. elegans cilia.

Prevo B, Mangeol P, Oswald F, Scholey JM, Peterman EJ.

Nat Cell Biol. 2015 Dec;17(12):1536-45. doi: 10.1038/ncb3263. Epub 2015 Nov 2.

PMID:
26523365
31.

The impact of DNA intercalators on DNA and DNA-processing enzymes elucidated through force-dependent binding kinetics.

Biebricher AS, Heller I, Roijmans RF, Hoekstra TP, Peterman EJ, Wuite GJ.

Nat Commun. 2015 Jun 18;6:7304. doi: 10.1038/ncomms8304.

32.

Small steps and giant leaps.

Prevo B, Peterman EJ.

Elife. 2015 Jun 3;4. doi: 10.7554/eLife.08366.

33.

Acoustic force spectroscopy.

Sitters G, Kamsma D, Thalhammer G, Ritsch-Marte M, Peterman EJ, Wuite GJ.

Nat Methods. 2015 Jan;12(1):47-50. doi: 10.1038/nmeth.3183. Epub 2014 Nov 24.

PMID:
25419961
34.

Visualization and quantification of nascent RAD51 filament formation at single-monomer resolution.

Candelli A, Holthausen JT, Depken M, Brouwer I, Franker MA, Marchetti M, Heller I, Bernard S, Garcin EB, Modesti M, Wyman C, Wuite GJ, Peterman EJ.

Proc Natl Acad Sci U S A. 2014 Oct 21;111(42):15090-5. doi: 10.1073/pnas.1307824111. Epub 2014 Oct 6.

35.

Imaging and quantification of trans-membrane protein diffusion in living bacteria.

Oswald F, L M Bank E, Bollen YJ, Peterman EJ.

Phys Chem Chem Phys. 2014 Jul 7;16(25):12625-34. doi: 10.1039/c4cp00299g.

PMID:
24760126
36.

Mobility analysis of super-resolved proteins on optically stretched DNA: comparing imaging techniques and parameters.

Heller I, Sitters G, Broekmans OD, Biebricher AS, Wuite GJ, Peterman EJ.

Chemphyschem. 2014 Mar 17;15(4):727-33. doi: 10.1002/cphc.201300813. Epub 2014 Jan 27. Review.

PMID:
24470208
37.

Optical tweezers analysis of DNA-protein complexes.

Heller I, Hoekstra TP, King GA, Peterman EJ, Wuite GJ.

Chem Rev. 2014 Mar 26;114(6):3087-119. doi: 10.1021/cr4003006. Epub 2014 Jan 21. Review. No abstract available.

PMID:
24443844
38.

Förster resonance energy transfer and kinesin motor proteins.

Prevo B, Peterman EJ.

Chem Soc Rev. 2014 Feb 21;43(4):1144-55. doi: 10.1039/c3cs60292c. Review.

PMID:
24071719
39.

Single-molecule views on homologous recombination.

Candelli A, Modesti M, Peterman EJ, Wuite GJ.

Q Rev Biophys. 2013 Nov;46(4):323-48. doi: 10.1017/S0033583513000073. Epub 2013 Sep 9. Review.

PMID:
24016421
40.

STED nanoscopy combined with optical tweezers reveals protein dynamics on densely covered DNA.

Heller I, Sitters G, Broekmans OD, Farge G, Menges C, Wende W, Hell SW, Peterman EJ, Wuite GJ.

Nat Methods. 2013 Sep;10(9):910-6. doi: 10.1038/nmeth.2599. Epub 2013 Aug 11.

PMID:
23934077
41.

A toolbox for generating single-stranded DNA in optical tweezers experiments.

Candelli A, Hoekstra TP, Farge G, Gross P, Peterman EJ, Wuite GJ.

Biopolymers. 2013 Sep;99(9):611-20. doi: 10.1002/bip.22225.

PMID:
23444293
42.

Revealing the competition between peeled ssDNA, melting bubbles, and S-DNA during DNA overstretching using fluorescence microscopy.

King GA, Gross P, Bockelmann U, Modesti M, Wuite GJ, Peterman EJ.

Proc Natl Acad Sci U S A. 2013 Mar 5;110(10):3859-64. doi: 10.1073/pnas.1213676110. Epub 2013 Feb 19.

43.

Protein sliding and DNA denaturation are essential for DNA organization by human mitochondrial transcription factor A.

Farge G, Laurens N, Broekmans OD, van den Wildenberg SM, Dekker LC, Gaspari M, Gustafsson CM, Peterman EJ, Falkenberg M, Wuite GJ.

Nat Commun. 2012;3:1013. doi: 10.1038/ncomms2001.

PMID:
22910359
44.

A brief introduction to single-molecule fluorescence methods.

van den Wildenberg SM, Prevo B, Peterman EJ.

Methods Mol Biol. 2011;783:81-99. doi: 10.1007/978-1-61779-282-3_5.

PMID:
21909884
45.

Studying kinesin's enzymatic cycle using a single-motor confocal motility assay, employing Förster resonance energy transfer.

Lansky Z, Peterman EJ.

Methods Mol Biol. 2011;778:19-32. doi: 10.1007/978-1-61779-261-8_3.

PMID:
21809198
46.

Combining optical trapping, fluorescence microscopy and micro-fluidics for single molecule studies of DNA-protein interactions.

Candelli A, Wuite GJ, Peterman EJ.

Phys Chem Chem Phys. 2011 Apr 28;13(16):7263-72. doi: 10.1039/c0cp02844d. Epub 2011 Mar 18.

PMID:
21416086
47.

How to quantify protein diffusion in the bacterial membrane.

van den Wildenberg SM, Bollen YJ, Peterman EJ.

Biopolymers. 2011 May;95(5):312-21. doi: 10.1002/bip.21585. Epub 2011 Jan 14. Review.

PMID:
21240922
48.

Experimental demonstration of an intensity minimum at the focus of a laser beam created by spatial coherence: application to the optical trapping of dielectric particles.

Raghunathan SB, van Dijk T, Peterman EJ, Visser TD.

Opt Lett. 2010 Dec 15;35(24):4166-8. doi: 10.1364/OL.35.004166.

PMID:
21165125
49.

Combining optical tweezers, single-molecule fluorescence microscopy, and microfluidics for studies of DNA-protein interactions.

Gross P, Farge G, Peterman EJ, Wuite GJ.

Methods Enzymol. 2010;475:427-53. doi: 10.1016/S0076-6879(10)75017-5.

PMID:
20627167
50.

Biophysics of DNA-ligand interactions resolved by force. Comment on "Biophysical characterization of DNA binding from single molecule force measurements" by K.R. Chaurasiya et al.

Peterman EJ, Gross P.

Phys Life Rev. 2010 Sep;7(3):344-5; discussion 358-61. doi: 10.1016/j.plrev.2010.06.005. Epub 2010 Jun 25. No abstract available.

PMID:
20598655

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