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Items: 47

1.

Iron-dependent cleavage of ribosomal RNA during oxidative stress in the yeast Saccharomyces cerevisiae.

Zinskie JA, Ghosh A, Trainor BM, Shedlovskiy D, Pestov DG, Shcherbik N.

J Biol Chem. 2018 Sep 14;293(37):14237-14248. doi: 10.1074/jbc.RA118.004174. Epub 2018 Jul 18.

2.

Endonucleolytic cleavage in the expansion segment 7 of 25S rRNA is an early marker of low-level oxidative stress in yeast.

Shedlovskiy D, Zinskie JA, Gardner E, Pestov DG, Shcherbik N.

J Biol Chem. 2017 Nov 10;292(45):18469-18485. doi: 10.1074/jbc.M117.800003. Epub 2017 Sep 22.

3.

Inhibition of post-transcriptional steps in ribosome biogenesis confers cytoprotection against chemotherapeutic agents in a p53-dependent manner.

Sapio RT, Nezdyur AN, Krevetski M, Anikin L, Manna VJ, Minkovsky N, Pestov DG.

Sci Rep. 2017 Aug 22;7(1):9041. doi: 10.1038/s41598-017-09002-w.

4.

One-step hot formamide extraction of RNA from Saccharomyces cerevisiae.

Shedlovskiy D, Shcherbik N, Pestov DG.

RNA Biol. 2017 Dec 2;14(12):1722-1726. doi: 10.1080/15476286.2017.1345417. Epub 2017 Jul 31.

5.

Toxicity assessment of ash and dust from handmade gold jewelry manufacturing workshops in Bangladesh.

Sikder AM, Hossain T, Khan MH, Aziz Hasan M, Fakhruzzaman M, Turner JB, Pestov D, McCallister LS, Maudood Elahi K.

Environ Monit Assess. 2017 Jun;189(6):279. doi: 10.1007/s10661-017-5978-3. Epub 2017 May 20.

PMID:
28528474
6.

Quantitative Northern Blot Analysis of Mammalian rRNA Processing.

Wang M, Pestov DG.

Methods Mol Biol. 2016;1455:147-57. doi: 10.1007/978-1-4939-3792-9_12.

PMID:
27576717
7.

Distinct types of translation termination generate substrates for ribosome-associated quality control.

Shcherbik N, Chernova TA, Chernoff YO, Pestov DG.

Nucleic Acids Res. 2016 Aug 19;44(14):6840-52. doi: 10.1093/nar/gkw566. Epub 2016 Jun 20.

8.

Reduced expression of the mouse ribosomal protein Rpl17 alters the diversity of mature ribosomes by enhancing production of shortened 5.8S rRNA.

Wang M, Parshin AV, Shcherbik N, Pestov DG.

RNA. 2015 Jul;21(7):1240-8. doi: 10.1261/rna.051169.115. Epub 2015 May 20.

9.

Quantifying noise in ultrafast laser sources and its effect on nonlinear applications.

Lozovoy VV, Rasskazov G, Pestov D, Dantus M.

Opt Express. 2015 May 4;23(9):12037-44. doi: 10.1364/OE.23.012037.

PMID:
25969292
10.

Two orthogonal cleavages separate subunit RNAs in mouse ribosome biogenesis.

Wang M, Anikin L, Pestov DG.

Nucleic Acids Res. 2014;42(17):11180-91. doi: 10.1093/nar/gku787. Epub 2014 Sep 4.

11.

Anomalous laser-induced group velocity dispersion in fused silica.

Rasskazov G, Ryabtsev A, Pestov D, Nie B, Lozovoy VV, Dantus M.

Opt Express. 2013 Jul 29;21(15):17695-700. doi: 10.1364/OE.21.017695.

PMID:
23938642
12.

Separation of long RNA by agarose-formaldehyde gel electrophoresis.

Mansour FH, Pestov DG.

Anal Biochem. 2013 Oct 1;441(1):18-20. doi: 10.1016/j.ab.2013.06.008. Epub 2013 Jun 22.

13.

Single-shot gas-phase thermometry by time-to-frequency mapping of coherence dephasing.

Yue O, Bremer MT, Pestov D, Gord JR, Roy S, Dantus M.

J Phys Chem A. 2012 Aug 9;116(31):8138-41. doi: 10.1021/jp3010103. Epub 2012 Jul 25.

PMID:
22747235
14.

Rapid cytoplasmic turnover of yeast ribosomes in response to rapamycin inhibition of TOR.

Pestov DG, Shcherbik N.

Mol Cell Biol. 2012 Jun;32(11):2135-44. doi: 10.1128/MCB.06763-11. Epub 2012 Mar 26.

15.

Generation of 42-fs and 10-nJ pulses from a fiber laser with self-similar evolution in the gain segment.

Nie B, Pestov D, Wise FW, Dantus M.

Opt Express. 2011 Jun 20;19(13):12074-80. doi: 10.1364/OE.19.012074.

16.

The ubiquitin ligase Rsp5 is required for ribosome stability in Saccharomyces cerevisiae.

Shcherbik N, Pestov DG.

RNA. 2011 Aug;17(8):1422-8. doi: 10.1261/rna.2615311. Epub 2011 Jun 10.

17.

Group-velocity-dispersion measurements of atmospheric and combustion-related gases using an ultrabroadband-laser source.

Wrzesinski PJ, Pestov D, Lozovoy VV, Gord JR, Dantus M, Roy S.

Opt Express. 2011 Mar 14;19(6):5163-71. doi: 10.1364/OE.19.005163.

PMID:
21445152
18.
19.

5'-end surveillance by Xrn2 acts as a shared mechanism for mammalian pre-rRNA maturation and decay.

Wang M, Pestov DG.

Nucleic Acids Res. 2011 Mar;39(5):1811-22. doi: 10.1093/nar/gkq1050. Epub 2010 Oct 29.

20.

Uranyl soil extraction and fluorescence enhancement by nanoporous silica gel: pH effects.

Chen CC, Pestov D, Nelson JD, Anderson JE, Tepper G.

J Fluoresc. 2011 Jan;21(1):119-24. doi: 10.1007/s10895-010-0695-0. Epub 2010 Jul 7.

PMID:
20607370
21.

Single-beam shaper-based pulse characterization and compression using MIIPS sonogram.

Pestov D, Lozovoy VV, Dantus M.

Opt Lett. 2010 May 1;35(9):1422-4. doi: 10.1364/OL.35.001422.

PMID:
20436590
22.

Mammalian DEAD box protein Ddx51 acts in 3' end maturation of 28S rRNA by promoting the release of U8 snoRNA.

Srivastava L, Lapik YR, Wang M, Pestov DG.

Mol Cell Biol. 2010 Jun;30(12):2947-56. doi: 10.1128/MCB.00226-10. Epub 2010 Apr 19.

23.

Polyadenylation and degradation of incomplete RNA polymerase I transcripts in mammalian cells.

Shcherbik N, Wang M, Lapik YR, Srivastava L, Pestov DG.

EMBO Rep. 2010 Feb;11(2):106-11. doi: 10.1038/embor.2009.271. Epub 2010 Jan 8.

24.

Multiple Independent Comb Shaping (MICS): phase-only generation of optical pulse sequences.

Pestov D, Lozovoy VV, Dantus M.

Opt Express. 2009 Aug 3;17(16):14351-61.

PMID:
19654842
25.

Two-photon imaging using adaptive phase compensated ultrashort laser pulses.

Xi P, Andegeko Y, Pestov D, Lovozoy VV, Dantus M.

J Biomed Opt. 2009 Jan-Feb;14(1):014002. doi: 10.1117/1.3059629.

26.

The 5' external transcribed spacer in mouse ribosomal RNA contains two cleavage sites.

Kent T, Lapik YR, Pestov DG.

RNA. 2009 Jan;15(1):14-20. doi: 10.1261/rna.1384709. Epub 2008 Nov 24.

27.

Assays for ribosomal RNA processing and ribosome assembly.

Pestov DG, Lapik YR, Lau LF.

Curr Protoc Cell Biol. 2008 Jun;Chapter 22:Unit 22.11. doi: 10.1002/0471143030.cb2211s39.

PMID:
18551418
28.

Single-shot detection of bacterial endospores via coherent Raman spectroscopy.

Pestov D, Wang X, Ariunbold GO, Murawski RK, Sautenkov VA, Dogariu A, Sokolov AV, Scully MO.

Proc Natl Acad Sci U S A. 2008 Jan 15;105(2):422-7. doi: 10.1073/pnas.0710427105. Epub 2008 Jan 9.

29.

Organic zeolites from a diolefinic monomer.

Guney-Altay O, Pestov D, Tepper G.

J Am Chem Soc. 2007 Nov 14;129(45):13957-62. Epub 2007 Oct 19.

PMID:
17948997
30.

Restricting conformational flexibility of the switch II region creates a dominant-inhibitory phenotype in Obg GTPase Nog1.

Lapik YR, Misra JM, Lau LF, Pestov DG.

Mol Cell Biol. 2007 Nov;27(21):7735-44. Epub 2007 Sep 4.

31.

Coherent versus incoherent Raman scattering: molecular coherence excitation and measurement.

Pestov D, Ariunbold GO, Wang X, Murawski RK, Sautenkov VA, Sokolov AV, Scully MO.

Opt Lett. 2007 Jun 15;32(12):1725-7.

PMID:
17572760
32.

Optimizing the laser-pulse configuration for coherent Raman spectroscopy.

Pestov D, Murawski RK, Ariunbold GO, Wang X, Zhi M, Sokolov AV, Sautenkov VA, Rostovtsev YV, Dogariu A, Huang Y, Scully MO.

Science. 2007 Apr 13;316(5822):265-8.

33.

Visible and UV coherent Raman spectroscopy of dipicolinic acid.

Pestov D, Zhi M, Sariyanni ZE, Kalugin NG, Kolomenskii AA, Murawski R, Paulus GG, Sautenkov VA, Schuessler H, Sokolov AV, Welch GR, Rostovtsev YV, Siebert T, Akimov DA, Graefe S, Kiefer W, Scully MO.

Proc Natl Acad Sci U S A. 2005 Oct 18;102(42):14976-81. Epub 2005 Oct 10.

34.

The WD-repeat protein GRWD1: potential roles in myeloid differentiation and ribosome biogenesis.

Gratenstein K, Heggestad AD, Fortun J, Notterpek L, Pestov DG, Fletcher BS.

Genomics. 2005 Jun;85(6):762-73.

PMID:
15885502
35.

Steady-state and frequency-domain lifetime measurements of an activated molecular imprinted polymer imprinted to dipicolinic acid.

Anderson J, Nelson J, Reynolds C, Ringelberg D, Tepper G, Pestov D.

J Fluoresc. 2004 May;14(3):269-74.

PMID:
15615208
36.

Physical and functional interaction between Pes1 and Bop1 in mammalian ribosome biogenesis.

Lapik YR, Fernandes CJ, Lau LF, Pestov DG.

Mol Cell. 2004 Jul 2;15(1):17-29.

37.
38.

ERB1, the yeast homolog of mammalian Bop1, is an essential gene required for maturation of the 25S and 5.8S ribosomal RNAs.

Pestov DG, Stockelman MG, Strezoska Z, Lau LF.

Nucleic Acids Res. 2001 Sep 1;29(17):3621-30.

40.
41.

Flow cytometric analysis of the cell cycle in transfected cells without cell fixation.

Pestov DG, Polonskaia M, Lau LF.

Biotechniques. 1999 Jan;26(1):102-6.

42.

Isolation of growth suppressors from a cDNA expression library.

Pestov DG, Grzeszkiewicz TM, Lau LF.

Oncogene. 1998 Dec 17;17(24):3187-97.

43.

p27Kip1 induces an accumulation of the repressor complexes of E2F and inhibits expression of the E2F-regulated genes.

Shiyanov P, Hayes S, Chen N, Pestov DG, Lau LF, Raychaudhuri P.

Mol Biol Cell. 1997 Sep;8(9):1815-27.

44.

Genetic selection of growth-inhibitory sequences in mammalian cells.

Pestov DG, Lau LF.

Proc Natl Acad Sci U S A. 1994 Dec 20;91(26):12549-53.

45.
46.

H-DNA and Z-DNA in the mouse c-Ki-ras promoter.

Pestov DG, Dayn A, Siyanova EYu, George DL, Mirkin SM.

Nucleic Acids Res. 1991 Dec 11;19(23):6527-32.

47.

Characterization of kinetoplast minicircle DNA in the lower trypanosomatid Crithidia oncopelti.

Pestov DG, Gladkaya LA, Maslov DA, Kolesnikov AA.

Mol Biochem Parasitol. 1990 Jun;41(1):135-45.

PMID:
2166912

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