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Items: 15

1.

Combined gene essentiality scoring improves the prediction of cancer dependency maps.

Wang W, Malyutina A, Pessia A, Saarela J, Heckman CA, Tang J.

EBioMedicine. 2019 Nov 12. pii: S2352-3964(19)30726-1. doi: 10.1016/j.ebiom.2019.10.051. [Epub ahead of print]

PMID:
31732481
2.

Integrated targeted metabolomic and lipidomic analysis: A novel approach to classifying early cystic precursors to invasive pancreatic cancer.

Gaiser RA, Pessia A, Ateeb Z, Davanian H, Fernández Moro C, Alkharaan H, Healy K, Ghazi S, Arnelo U, Valente R, Velagapudi V, Sällberg Chen M, Del Chiaro M.

Sci Rep. 2019 Jul 15;9(1):10208. doi: 10.1038/s41598-019-46634-6.

3.

Drug combination sensitivity scoring facilitates the discovery of synergistic and efficacious drug combinations in cancer.

Malyutina A, Majumder MM, Wang W, Pessia A, Heckman CA, Tang J.

PLoS Comput Biol. 2019 May 20;15(5):e1006752. doi: 10.1371/journal.pcbi.1006752. eCollection 2019 May.

4.

DrugComb: an integrative cancer drug combination data portal.

Zagidullin B, Aldahdooh J, Zheng S, Wang W, Wang Y, Saad J, Malyutina A, Jafari M, Tanoli Z, Pessia A, Tang J.

Nucleic Acids Res. 2019 Jul 2;47(W1):W43-W51. doi: 10.1093/nar/gkz337.

5.
6.

Convergent Amino Acid Signatures in Polyphyletic Campylobacter jejuni Subpopulations Suggest Human Niche Tropism.

Méric G, McNally A, Pessia A, Mourkas E, Pascoe B, Mageiros L, Vehkala M, Corander J, Sheppard SK.

Genome Biol Evol. 2018 Mar 1;10(3):763-774. doi: 10.1093/gbe/evy026.

7.

Kpax3: Bayesian bi-clustering of large sequence datasets.

Pessia A, Corander J.

Bioinformatics. 2018 Jun 15;34(12):2132-2133. doi: 10.1093/bioinformatics/bty056.

PMID:
29425273
8.

Adipose tissue mitochondrial capacity associates with long-term weight loss success.

Jokinen R, Rinnankoski-Tuikka R, Kaye S, Saarinen L, Heinonen S, Myöhänen M, Rappou E, Jukarainen S, Rissanen A, Pessia A, Velagapudi V, Virtanen KA, Pirinen E, Pietiläinen KH.

Int J Obes (Lond). 2018 Apr;42(4):817-825. doi: 10.1038/ijo.2017.299. Epub 2017 Dec 5.

PMID:
29203860
9.

mTORC1 Regulates Mitochondrial Integrated Stress Response and Mitochondrial Myopathy Progression.

Khan NA, Nikkanen J, Yatsuga S, Jackson C, Wang L, Pradhan S, Kivelä R, Pessia A, Velagapudi V, Suomalainen A.

Cell Metab. 2017 Aug 1;26(2):419-428.e5. doi: 10.1016/j.cmet.2017.07.007.

10.

Host-Microbe Co-metabolism Dictates Cancer Drug Efficacy in C. elegans.

Scott TA, Quintaneiro LM, Norvaisas P, Lui PP, Wilson MP, Leung KY, Herrera-Dominguez L, Sudiwala S, Pessia A, Clayton PT, Bryson K, Velagapudi V, Mills PB, Typas A, Greene NDE, Cabreiro F.

Cell. 2017 Apr 20;169(3):442-456.e18. doi: 10.1016/j.cell.2017.03.040.

11.

CLUH regulates mitochondrial metabolism by controlling translation and decay of target mRNAs.

Schatton D, Pla-Martin D, Marx MC, Hansen H, Mourier A, Nemazanyy I, Pessia A, Zentis P, Corona T, Kondylis V, Barth E, Schauss AC, Velagapudi V, Rugarli EI.

J Cell Biol. 2017 Mar 6;216(3):675-693. doi: 10.1083/jcb.201607019. Epub 2017 Feb 10.

12.

Faecal and Serum Metabolomics in Paediatric Inflammatory Bowel Disease.

Kolho KL, Pessia A, Jaakkola T, de Vos WM, Velagapudi V.

J Crohns Colitis. 2017 Mar 1;11(3):321-334. doi: 10.1093/ecco-jcc/jjw158.

PMID:
27609529
13.

K-Pax2: Bayesian identification of cluster-defining amino acid positions in large sequence datasets.

Pessia A, Grad Y, Cobey S, Puranen JS, Corander J.

Microb Genom. 2015 Jul 15;1(1):e000025. doi: 10.1099/mgen.0.000025. eCollection 2015 Jul.

14.

Dense genomic sampling identifies highways of pneumococcal recombination.

Chewapreecha C, Harris SR, Croucher NJ, Turner C, Marttinen P, Cheng L, Pessia A, Aanensen DM, Mather AE, Page AJ, Salter SJ, Harris D, Nosten F, Goldblatt D, Corander J, Parkhill J, Turner P, Bentley SD.

Nat Genet. 2014 Mar;46(3):305-309. doi: 10.1038/ng.2895. Epub 2014 Feb 9.

15.

Anxiety undermines quality of life in ALS patients and caregivers.

Vignola A, Guzzo A, Calvo A, Moglia C, Pessia A, Cavallo E, Cammarosano S, Giacone S, Ghiglione P, Chiò A.

Eur J Neurol. 2008 Nov;15(11):1231-6. doi: 10.1111/j.1468-1331.2008.02303.x. Epub 2008 Sep 18.

PMID:
18803649

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