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Items: 19

1.

Detecting the impact of subject characteristics on machine learning-based diagnostic applications.

Chaibub Neto E, Pratap A, Perumal TM, Tummalacherla M, Snyder P, Bot BM, Trister AD, Friend SH, Mangravite L, Omberg L.

NPJ Digit Med. 2019 Oct 11;2:99. doi: 10.1038/s41746-019-0178-x. eCollection 2019.

2.

Identifying and ranking potential driver genes of Alzheimer's disease using multiview evidence aggregation.

Mukherjee S, Perumal TM, Daily K, Sieberts SK, Omberg L, Preuss C, Carter GW, Mangravite LM, Logsdon BA.

Bioinformatics. 2019 Jul 15;35(14):i568-i576. doi: 10.1093/bioinformatics/btz365.

3.

Landscape of Conditional eQTL in Dorsolateral Prefrontal Cortex and Co-localization with Schizophrenia GWAS.

Dobbyn A, Huckins LM, Boocock J, Sloofman LG, Glicksberg BS, Giambartolomei C, Hoffman GE, Perumal TM, Girdhar K, Jiang Y, Raj T, Ruderfer DM, Kramer RS, Pinto D; CommonMind Consortium, Akbarian S, Roussos P, Domenici E, Devlin B, Sklar P, Stahl EA, Sieberts SK.

Am J Hum Genet. 2018 Jun 7;102(6):1169-1184. doi: 10.1016/j.ajhg.2018.04.011. Epub 2018 May 24.

4.

Unsupervised Analysis of Transcriptomics in Bacterial Sepsis Across Multiple Datasets Reveals Three Robust Clusters.

Sweeney TE, Azad TD, Donato M, Haynes WA, Perumal TM, Henao R, Bermejo-Martin JF, Almansa R, Tamayo E, Howrylak JA, Choi A, Parnell GP, Tang B, Nichols M, Woods CW, Ginsburg GS, Kingsmore SF, Omberg L, Mangravite LM, Wong HR, Tsalik EL, Langley RJ, Khatri P.

Crit Care Med. 2018 Jun;46(6):915-925. doi: 10.1097/CCM.0000000000003084.

5.

A community approach to mortality prediction in sepsis via gene expression analysis.

Sweeney TE, Perumal TM, Henao R, Nichols M, Howrylak JA, Choi AM, Bermejo-Martin JF, Almansa R, Tamayo E, Davenport EE, Burnham KL, Hinds CJ, Knight JC, Woods CW, Kingsmore SF, Ginsburg GS, Wong HR, Parnell GP, Tang B, Moldawer LL, Moore FE, Omberg L, Khatri P, Tsalik EL, Mangravite LM, Langley RJ.

Nat Commun. 2018 Feb 15;9(1):694. doi: 10.1038/s41467-018-03078-2.

6.

Molecular, phenotypic, and sample-associated data to describe pluripotent stem cell lines and derivatives.

Daily K, Ho Sui SJ, Schriml LM, Dexheimer PJ, Salomonis N, Schroll R, Bush S, Keddache M, Mayhew C, Lotia S, Perumal TM, Dang K, Pantano L, Pico AR, Grassman E, Nordling D, Hide W, Hatzopoulos AK, Malik P, Cancelas JA, Lutzko C, Aronow BJ, Omberg L.

Sci Data. 2017 Mar 28;4:170030. doi: 10.1038/sdata.2017.30.

7.

Gene expression elucidates functional impact of polygenic risk for schizophrenia.

Fromer M, Roussos P, Sieberts SK, Johnson JS, Kavanagh DH, Perumal TM, Ruderfer DM, Oh EC, Topol A, Shah HR, Klei LL, Kramer R, Pinto D, Gümüş ZH, Cicek AE, Dang KK, Browne A, Lu C, Xie L, Readhead B, Stahl EA, Xiao J, Parvizi M, Hamamsy T, Fullard JF, Wang YC, Mahajan MC, Derry JM, Dudley JT, Hemby SE, Logsdon BA, Talbot K, Raj T, Bennett DA, De Jager PL, Zhu J, Zhang B, Sullivan PF, Chess A, Purcell SM, Shinobu LA, Mangravite LM, Toyoshiba H, Gur RE, Hahn CG, Lewis DA, Haroutunian V, Peters MA, Lipska BK, Buxbaum JD, Schadt EE, Hirai K, Roeder K, Brennand KJ, Katsanis N, Domenici E, Devlin B, Sklar P.

Nat Neurosci. 2016 Nov;19(11):1442-1453. doi: 10.1038/nn.4399. Epub 2016 Sep 26.

8.

Gene Regulatory Network Inference of Immunoresponsive Gene 1 (IRG1) Identifies Interferon Regulatory Factor 1 (IRF1) as Its Transcriptional Regulator in Mammalian Macrophages.

Tallam A, Perumal TM, Antony PM, Jäger C, Fritz JV, Vallar L, Balling R, Del Sol A, Michelucci A.

PLoS One. 2016 Feb 12;11(2):e0149050. doi: 10.1371/journal.pone.0149050. eCollection 2016.

9.

PERSONALIZED HYPOTHESIS TESTS FOR DETECTING MEDICATION RESPONSE IN PARKINSON DISEASE PATIENTS USING iPHONE SENSOR DATA.

Chaibub Neto E, Bot BM, Perumal T, Omberg L, Guinney J, Kellen M, Klein A, Friend SH, Trister AD.

Pac Symp Biocomput. 2016;21:273-84.

10.

TRIM32 modulates pluripotency entry and exit by directly regulating Oct4 stability.

Bahnassawy L, Perumal TM, Gonzalez-Cano L, Hillje AL, Taher L, Makalowski W, Suzuki Y, Fuellen G, del Sol A, Schwamborn JC.

Sci Rep. 2015 Aug 26;5:13456. doi: 10.1038/srep13456.

11.

Detecting cellular reprogramming determinants by differential stability analysis of gene regulatory networks.

Crespo I, Perumal TM, Jurkowski W, del Sol A.

BMC Syst Biol. 2013 Dec 19;7:140. doi: 10.1186/1752-0509-7-140.

12.

Integrating pathways of Parkinson's disease in a molecular interaction map.

Fujita KA, Ostaszewski M, Matsuoka Y, Ghosh S, Glaab E, Trefois C, Crespo I, Perumal TM, Jurkowski W, Antony PM, Diederich N, Buttini M, Kodama A, Satagopam VP, Eifes S, Del Sol A, Schneider R, Kitano H, Balling R.

Mol Neurobiol. 2014 Feb;49(1):88-102. doi: 10.1007/s12035-013-8489-4. Epub 2013 Jul 7. Review.

13.

Understanding dynamics using sensitivity analysis: caveat and solution.

Perumal TM, Gunawan R.

BMC Syst Biol. 2011 Mar 15;5:41. doi: 10.1186/1752-0509-5-41.

14.

Dynamical analysis of cellular networks based on the Green's function matrix.

Perumal TM, Wu Y, Gunawan R.

J Theor Biol. 2009 Nov 21;261(2):248-59. doi: 10.1016/j.jtbi.2009.07.037. Epub 2009 Aug 4.

PMID:
19660478
15.

Plant-based formulation for bronchial asthma: a controlled clinical trial to compare its efficacy with oral salbutamol and theophylline.

Murali PM, Rajasekaran S, Krishnarajasekar OR, Perumal T, Nalini K, Lakshmisubramanian S, Deivanayagam CN.

Respiration. 2006;73(4):457-63. Epub 2005 Nov 22.

PMID:
16308544
16.

A major ozonation product of cholesterol, 3beta-hydroxy-5-oxo-5,6-secocholestan-6-al, induces apoptosis in H9c2 cardiomyoblasts.

Sathishkumar K, Haque M, Perumal TE, Francis J, Uppu RM.

FEBS Lett. 2005 Nov 21;579(28):6444-50. Epub 2005 Nov 2.

17.

Thromboelastography as a perioperative measure of anticoagulation resulting from low molecular weight heparin: a comparison with anti-Xa concentrations.

Klein SM, Slaughter TF, Vail PT, Ginsberg B, El-Moalem HE, Alexander R, D'Ercole F, Greengrass RA, Perumal TT, Welsby I, Gan TJ.

Anesth Analg. 2000 Nov;91(5):1091-5.

PMID:
11049889
18.

Effect of timing of ondansetron administration on incidence of postoperative vomiting in paediatric strabismus surgery.

Madan R, Perumal T, Subramaniam K, Shende D, Sadhasivam S, Garg S.

Anaesth Intensive Care. 2000 Feb;28(1):27-30. Erratum in: Anaesth Intensive Care 2000 Dec;28(6):716. Sadashivam S [corrected to Sadhasivam S].

19.

Effect of pharmacological blockade on lithium-induced water drinking.

Perumal TA, Rao JP.

Br J Pharmacol. 1974 May;51(1):107-8.

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