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Ensembl Genomes 2020-enabling non-vertebrate genomic research.

Howe KL, Contreras-Moreira B, De Silva N, Maslen G, Akanni W, Allen J, Alvarez-Jarreta J, Barba M, Bolser DM, Cambell L, Carbajo M, Chakiachvili M, Christensen M, Cummins C, Cuzick A, Davis P, Fexova S, Gall A, George N, Gil L, Gupta P, Hammond-Kosack KE, Haskell E, Hunt SE, Jaiswal P, Janacek SH, Kersey PJ, Langridge N, Maheswari U, Maurel T, McDowall MD, Moore B, Muffato M, Naamati G, Naithani S, Olson A, Papatheodorou I, Patricio M, Paulini M, Pedro H, Perry E, Preece J, Rosello M, Russell M, Sitnik V, Staines DM, Stein J, Tello-Ruiz MK, Trevanion SJ, Urban M, Wei S, Ware D, Williams G, Yates AD, Flicek P.

Nucleic Acids Res. 2019 Oct 10. pii: gkz890. doi: 10.1093/nar/gkz890. [Epub ahead of print]


The International Genome Sample Resource (IGSR) collection of open human genomic variation resources.

Fairley S, Lowy-Gallego E, Perry E, Flicek P.

Nucleic Acids Res. 2019 Oct 4. pii: gkz836. doi: 10.1093/nar/gkz836. [Epub ahead of print]


Galectin-9 Is a Possible Promoter of Immunopathology in Rheumatoid Arthritis by Activation of Peptidyl Arginine Deiminase 4 (PAD-4) in Granulocytes.

Wiersma VR, Clarke A, Pouwels SD, Perry E, Abdullah TM, Kelly C, Soyza A, Hutchinson D, Eggleton P, Bremer E.

Int J Mol Sci. 2019 Aug 19;20(16). pii: E4046. doi: 10.3390/ijms20164046.


The landscape of novel and complementary targets for immunotherapy: an analysis of gene expression in the tumor microenvironment.

Gaffney SG, Perry EB, Chen PM, Greenstein A, Kaech SM, Townsend JP.

Oncotarget. 2019 Jul 16;10(44):4532-4545. doi: 10.18632/oncotarget.27027. eCollection 2019 Jul 16.


Effect of Road Transport on the Equine Cecal Microbiota.

Perry E, Cross TL, Francis JM, Holscher HD, Clark SD, Swanson KS.

J Equine Vet Sci. 2018 Sep;68:12-20. doi: 10.1016/j.jevs.2018.04.004. Epub 2018 Apr 21.


Prolonged Response to Pembrolizumab in Spindle Cell Squamous Cell Carcinoma Metastatic to the Central Nervous System.

Liu Y, Fitzgerald B, Perry E, Pathak A, Chao HH.

J Investig Med High Impact Case Rep. 2019 Jan-Dec;7:2324709619850216. doi: 10.1177/2324709619850216.


Use of herbal medicines: Pilot survey of UK users' views.

Zahn R, Perry N, Perry E, Mukaetova-Ladinska EB.

Complement Ther Med. 2019 Jun;44:83-90. doi: 10.1016/j.ctim.2019.02.007. Epub 2019 Feb 16.


Deficient pregnenolone synthesis associated with congenital adrenal hyperplasia and organelle dysfunction.

Bose HS, Rice AM, Marshall B, Gebrail F, Kupshik D, Perry EW.

Endocrinol Diabetes Metab Case Rep. 2019 May 3;2019. pii: EDM190009. doi: 10.1530/EDM-19-0009. [Epub ahead of print]


Long-term trends, current status, and transitions of water quality in Chesapeake Bay.

Harding LW Jr, Mallonee ME, Perry ES, Miller WD, Adolf JE, Gallegos CL, Paerl HW.

Sci Rep. 2019 Apr 30;9(1):6709. doi: 10.1038/s41598-019-43036-6.


The transcription factors ActR and SoxR differentially affect the phenazine tolerance of Agrobacterium tumefaciens.

Perry EK, Newman DK.

Mol Microbiol. 2019 Jul;112(1):199-218. doi: 10.1111/mmi.14263. Epub 2019 May 3.


Use of a Decision Aid for Patients Considering Peritoneal Dialysis and In-Center Hemodialysis: A Randomized Controlled Trial.

Subramanian L, Zhao J, Zee J, Knaus M, Fagerlin A, Perry E, Swartz J, McCall M, Bryant N, Tentori F.

Am J Kidney Dis. 2019 Sep;74(3):351-360. doi: 10.1053/j.ajkd.2019.01.030. Epub 2019 Apr 4.


Social Brain Functional Maturation in Newborn Infants With and Without a Family History of Autism Spectrum Disorder.

Ciarrusta J, O'Muircheartaigh J, Dimitrova R, Batalle D, Cordero-Grande L, Price A, Hughes E, Steinweg JK, Kangas J, Perry E, Javed A, Stoencheva V, Akolekar R, Victor S, Hajnal J, Murphy D, Edwards D, Arichi T, McAlonan G.

JAMA Netw Open. 2019 Apr 5;2(4):e191868. doi: 10.1001/jamanetworkopen.2019.1868.


Discovery of Potent Myeloid Cell Leukemia-1 (Mcl-1) Inhibitors That Demonstrate in Vivo Activity in Mouse Xenograft Models of Human Cancer.

Lee T, Christov PP, Shaw S, Tarr JC, Zhao B, Veerasamy N, Jeon KO, Mills JJ, Bian Z, Sensintaffar JL, Arnold AL, Fogarty SA, Perry E, Ramsey HE, Cook RS, Hollingshead M, Davis Millin M, Lee KM, Koss B, Budhraja A, Opferman JT, Kim K, Arteaga CL, Moore WJ, Olejniczak ET, Savona MR, Fesik SW.

J Med Chem. 2019 Apr 25;62(8):3971-3988. doi: 10.1021/acs.jmedchem.8b01991. Epub 2019 Apr 16.


Computed tomography colonography: Retrospective comparison of laxative plus barium tagging versus iodinated contrast only for bowel preparation and faecal tagging.

Perry E, Moore H, Reeve J.

J Med Imaging Radiat Oncol. 2019 Apr;63(2):203-211. doi: 10.1111/1754-9485.12860. Epub 2019 Feb 20.


Staying the Course: Through End of Life in ESRD.

Perry E, Joy S, Swartz R.

J Am Soc Nephrol. 2019 Feb 19. pii: ASN.2019010020. doi: 10.1681/ASN.2019010020. [Epub ahead of print] No abstract available.


Combined Aurora Kinase A (AURKA) and WEE1 Inhibition Demonstrates Synergistic Antitumor Effect in Squamous Cell Carcinoma of the Head and Neck.

Lee JW, Parameswaran J, Sandoval-Schaefer T, Eoh KJ, Yang DH, Zhu F, Mehra R, Sharma R, Gaffney SG, Perry EB, Townsend JP, Serebriiskii IG, Golemis EA, Issaeva N, Yarbrough WG, Koo JS, Burtness B.

Clin Cancer Res. 2019 Jun 1;25(11):3430-3442. doi: 10.1158/1078-0432.CCR-18-0440. Epub 2019 Feb 12.


Fragment-based screening of programmed death ligand 1 (PD-L1).

Perry E, Mills JJ, Zhao B, Wang F, Sun Q, Christov PP, Tarr JC, Rietz TA, Olejniczak ET, Lee T, Fesik S.

Bioorg Med Chem Lett. 2019 Mar 15;29(6):786-790. doi: 10.1016/j.bmcl.2019.01.028. Epub 2019 Jan 24.


Ensembl 2019.

Cunningham F, Achuthan P, Akanni W, Allen J, Amode MR, Armean IM, Bennett R, Bhai J, Billis K, Boddu S, Cummins C, Davidson C, Dodiya KJ, Gall A, Girón CG, Gil L, Grego T, Haggerty L, Haskell E, Hourlier T, Izuogu OG, Janacek SH, Juettemann T, Kay M, Laird MR, Lavidas I, Liu Z, Loveland JE, Marugán JC, Maurel T, McMahon AC, Moore B, Morales J, Mudge JM, Nuhn M, Ogeh D, Parker A, Parton A, Patricio M, Abdul Salam AI, Schmitt BM, Schuilenburg H, Sheppard D, Sparrow H, Stapleton E, Szuba M, Taylor K, Threadgold G, Thormann A, Vullo A, Walts B, Winterbottom A, Zadissa A, Chakiachvili M, Frankish A, Hunt SE, Kostadima M, Langridge N, Martin FJ, Muffato M, Perry E, Ruffier M, Staines DM, Trevanion SJ, Aken BL, Yates AD, Zerbino DR, Flicek P.

Nucleic Acids Res. 2019 Jan 8;47(D1):D745-D751. doi: 10.1093/nar/gky1113.


Handler training improves decontamination of working canines with oil-based exposure in field conditions using disposable kits.

Powell EB, Apgar GA, Jenkins EK, Liang SY, Perry EB.

J Vet Behav. 2019 Jan-Feb;29:4-10. doi: 10.1016/j.jveb.2018.08.002. Epub 2018 Aug 11.


Parents in science.

Perry E, Tessmar-Raible K, Raible F.

Genome Biol. 2018 Oct 29;19(1):180. doi: 10.1186/s13059-018-1549-3.


Perceptions about the dialysis modality decision process among peritoneal dialysis and in-center hemodialysis patients.

Zee J, Zhao J, Subramanian L, Perry E, Bryant N, McCall M, Restovic Y, Torres D, Robinson BM, Pisoni RL, Tentori F.

BMC Nephrol. 2018 Oct 29;19(1):298. doi: 10.1186/s12882-018-1096-x.


Effects of Delivering SLCO1B1 Pharmacogenetic Information in Randomized Trial and Observational Settings.

Peyser B, Perry EP, Singh K, Gill RD, Mehan MR, Haga SB, Musty MD, Milazzo NA, Savard D, Li YJ, Trujilio G, Voora D.

Circ Genom Precis Med. 2018 Sep;11(9):e002228. doi: 10.1161/CIRCGEN.118.002228.


Inner Mitochondrial Translocase Tim50 Is Central in Adrenal and Testicular Steroid Synthesis.

Bose HS, Gebrail F, Marshall B, Perry EW, Whittal RM.

Mol Cell Biol. 2018 Dec 11;39(1). pii: e00484-18. doi: 10.1128/MCB.00484-18. Print 2019 Jan 1.


The Neuroanatomy of Autism Spectrum Disorder Symptomatology in 22q11.2 Deletion Syndrome.

Gudbrandsen M, Daly E, Murphy CM, Wichers RH, Stoencheva V, Perry E, Andrews D, Blackmore CE, Rogdaki M, Kushan L, Bearden CE, Murphy DGM, Craig MC, Ecker C.

Cereb Cortex. 2018 Oct 1. doi: 10.1093/cercor/bhy239. [Epub ahead of print]


The Virtual Hospitalist: A Single-Site Implementation Bringing Hospitalist Coverage to Critical Access Hospitals.

Kuperman EF, Linson EL, Klefstad K, Perry E, Glenn K.

J Hosp Med. 2018 Nov 1;13(11):759-763. doi: 10.12788/jhm.3061. Epub 2018 Sep 26.


Biomarkers of inflammation - LBP and TLR- predict progression of knee osteoarthritis in the DOXY clinical trial.

Huang ZY, Perry E, Huebner JL, Katz B, Li YJ, Kraus VB.

Osteoarthritis Cartilage. 2018 Dec;26(12):1658-1665. doi: 10.1016/j.joca.2018.08.005. Epub 2018 Aug 23.


Delay discounting and e-cigarette use: An investigation in current, former, and never cigarette smokers.

Stein JS, Heckman BW, Pope DA, Perry ES, Fong GT, Cummings KM, Bickel WK.

Drug Alcohol Depend. 2018 Oct 1;191:165-173. doi: 10.1016/j.drugalcdep.2018.06.034. Epub 2018 Aug 11.


Juvenile rockfish show resilience to CO2-acidification and hypoxia across multiple biological scales.

Davis BE, Komoroske LM, Hansen MJ, Poletto JB, Perry EN, Miller NA, Ehlman SM, Wheeler SG, Sih A, Todgham AE, Fangue NA.

Conserv Physiol. 2018 Jul 10;6(1):coy038. doi: 10.1093/conphys/coy038. eCollection 2018.


The Ensembl Genome Browser: Strategies for Accessing Eukaryotic Genome Data.

Newman V, Moore B, Sparrow H, Perry E.

Methods Mol Biol. 2018;1757:115-139. doi: 10.1007/978-1-4939-7737-6_6.


When the Nose Doesn't Know: Canine Olfactory Function Associated With Health, Management, and Potential Links to Microbiota.

Jenkins EK, DeChant MT, Perry EB.

Front Vet Sci. 2018 Mar 29;5:56. doi: 10.3389/fvets.2018.00056. eCollection 2018. Review.


A randomised double-blind placebo-controlled pilot trial of a combined extract of sage, rosemary and melissa, traditional herbal medicines, on the enhancement of memory in normal healthy subjects, including influence of age.

Perry NSL, Menzies R, Hodgson F, Wedgewood P, Howes MR, Brooker HJ, Wesnes KA, Perry EK.

Phytomedicine. 2018 Jan 15;39:42-48. doi: 10.1016/j.phymed.2017.08.015. Epub 2017 Aug 18.


Importance of Proactive Treatment of Depression in Lewy Body Dementias: The Impact on Hippocampal Neurogenesis and Cognition in a Post-Mortem Study.

Gatt A, Ekonomou A, Somani A, Thuret S, Howlett D, Corbett A, Johnson M, Perry E, Attems J, Francis P, Aarsland D, Ballard C.

Dement Geriatr Cogn Disord. 2017;44(5-6):283-293. doi: 10.1159/000484437. Epub 2018 Jan 27.


SAXS analysis of a soluble cytosolic NgBR construct including extracellular and transmembrane domains.

Holcomb J, Doughan M, Spellmon N, Lewis B, Perry E, Zhang Y, Nico L, Wan J, Chakravarthy S, Shang W, Miao Q, Stemmler T, Yang Z.

PLoS One. 2018 Jan 18;13(1):e0191371. doi: 10.1371/journal.pone.0191371. eCollection 2018.


Optimization of Potent and Selective Tricyclic Indole Diazepinone Myeloid Cell Leukemia-1 Inhibitors Using Structure-Based Design.

Shaw S, Bian Z, Zhao B, Tarr JC, Veerasamy N, Jeon KO, Belmar J, Arnold AL, Fogarty SA, Perry E, Sensintaffar JL, Camper DV, Rossanese OW, Lee T, Olejniczak ET, Fesik SW.

J Med Chem. 2018 Mar 22;61(6):2410-2421. doi: 10.1021/acs.jmedchem.7b01155. Epub 2018 Mar 9.


Seeing for ourselves: Insights into the development of moral behaviour from models of visual perception and misperception.

Collerton D, Perry E.

Behav Brain Sci. 2018 Jan;41:e40. doi: 10.1017/S0140525X17000656.


Ensembl 2018.

Zerbino DR, Achuthan P, Akanni W, Amode MR, Barrell D, Bhai J, Billis K, Cummins C, Gall A, Girón CG, Gil L, Gordon L, Haggerty L, Haskell E, Hourlier T, Izuogu OG, Janacek SH, Juettemann T, To JK, Laird MR, Lavidas I, Liu Z, Loveland JE, Maurel T, McLaren W, Moore B, Mudge J, Murphy DN, Newman V, Nuhn M, Ogeh D, Ong CK, Parker A, Patricio M, Riat HS, Schuilenburg H, Sheppard D, Sparrow H, Taylor K, Thormann A, Vullo A, Walts B, Zadissa A, Frankish A, Hunt SE, Kostadima M, Langridge N, Martin FJ, Muffato M, Perry E, Ruffier M, Staines DM, Trevanion SJ, Aken BL, Cunningham F, Yates A, Flicek P.

Nucleic Acids Res. 2018 Jan 4;46(D1):D754-D761. doi: 10.1093/nar/gkx1098.


The Low-Diversity Fecal Microbiota of the Critically Endangered Kākāpō Is Robust to Anthropogenic Dietary and Geographic Influences.

Perry EK, Digby A, Taylor MW.

Front Microbiol. 2017 Oct 20;8:2033. doi: 10.3389/fmicb.2017.02033. eCollection 2017.


Service user perspectives on coercion and restraint in mental health.

Rose D, Perry E, Rae S, Good N.

BJPsych Int. 2017 Aug 1;14(3):59-61. eCollection 2017 Aug.


Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species.

Kersey PJ, Allen JE, Allot A, Barba M, Boddu S, Bolt BJ, Carvalho-Silva D, Christensen M, Davis P, Grabmueller C, Kumar N, Liu Z, Maurel T, Moore B, McDowall MD, Maheswari U, Naamati G, Newman V, Ong CK, Paulini M, Pedro H, Perry E, Russell M, Sparrow H, Tapanari E, Taylor K, Vullo A, Williams G, Zadissia A, Olson A, Stein J, Wei S, Tello-Ruiz M, Ware D, Luciani A, Potter S, Finn RD, Urban M, Hammond-Kosack KE, Bolser DM, De Silva N, Howe KL, Langridge N, Maslen G, Staines DM, Yates A.

Nucleic Acids Res. 2018 Jan 4;46(D1):D802-D808. doi: 10.1093/nar/gkx1011.


Reliability of a Skin Diagnostic Device in Assessing Hydration and Erythema.

Huimin K, Rowledge AM, Borzdynski CJ, Miller C, Frescos N, McKenzie G, Perry E, McGuiness W.

Adv Skin Wound Care. 2017 Oct;30(10):452-459. doi: 10.1097/01.ASW.0000520117.58976.32. Review.


Health Literacy in Adolescents With Sickle Cell Disease.

Perry EL, Carter PA, Becker HA, Garcia AA, Mackert M, Johnson KE.

J Pediatr Nurs. 2017 Sep - Oct;36:191-196. doi: 10.1016/j.pedn.2017.05.012. Epub 2017 Jul 7.


Bacillus swezeyi sp. nov. and Bacillus haynesii sp. nov., isolated from desert soil.

Dunlap CA, Schisler DA, Perry EB, Connor N, Cohan FM, Rooney AP.

Int J Syst Evol Microbiol. 2017 Aug;67(8):2720-2725. doi: 10.1099/ijsem.0.002007. Epub 2017 Aug 15.


Interacting effects of genetic variation for seed dormancy and flowering time on phenology, life history, and fitness of experimental Arabidopsis thaliana populations over multiple generations in the field.

Taylor MA, Cooper MD, Sellamuthu R, Braun P, Migneault A, Browning A, Perry E, Schmitt J.

New Phytol. 2017 Oct;216(1):291-302. doi: 10.1111/nph.14712. Epub 2017 Jul 28.


Sequential Release of Multiple Drugs from Flexible Drug Delivery Films.

Jennings CL, Perry EK, Dziubla TD, Puleo DA.

Int J Polym Mater. 2017;66(11):569-576. doi: 10.1080/00914037.2016.1252352. Epub 2017 Jan 4.


Heightened autoantibody immune response to citrullinated calreticulin in bronchiectasis: Implications for rheumatoid arthritis.

Clarke A, Perry E, Kelly C, De Soyza A, Heesom K, Gold LI, Ollier W, Hutchinson D, Eggleton P.

Int J Biochem Cell Biol. 2017 Aug;89:199-206. doi: 10.1016/j.biocel.2017.06.013. Epub 2017 Jun 24.


Physiological effects of stress related to helicopter travel in Federal Emergency Management Agency search-and-rescue canines.

Perry E, Gulson N, Liu Cross TW, Swanson KS.

J Nutr Sci. 2017 Jun 7;6:e28. doi: 10.1017/jns.2017.25. eCollection 2017.


Tumor diversity and evolution revealed through RADseq.

Perry EB, Makohon-Moore A, Zheng C, Kaufman CK, Cai J, Iacobuzio-Donahue CA, White RM.

Oncotarget. 2017 Jun 27;8(26):41792-41805. doi: 10.18632/oncotarget.18355.



Sethna V, Perry E, Domoney J, Iles J, Psychogiou L, Rowbotham NEL, Stein A, Murray L, Ramchandani PG.

Infant Ment Health J. 2017 May;38(3):378-390. doi: 10.1002/imhj.21642. Epub 2017 Apr 27.


Mitochondrial metabolic regulation by GRP78.

Prasad M, Pawlak KJ, Burak WE, Perry EE, Marshall B, Whittal RM, Bose HS.

Sci Adv. 2017 Feb 24;3(2):e1602038. doi: 10.1126/sciadv.1602038. eCollection 2017 Feb.

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