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Priming of microcystin degradation in carbon-amended membrane biofilm communities is promoted by oxygen limited conditions.

Silva MOD, Pernthaler J.

FEMS Microbiol Ecol. 2019 Oct 7. pii: fiz157. doi: 10.1093/femsec/fiz157. [Epub ahead of print]


Source Community and Assembly Processes Affect the Efficiency of Microbial Microcystin Degradation on Drinking Water Filtration Membranes.

Silva MOD, Desmond P, Derlon N, Morgenroth E, Pernthaler J.

Front Microbiol. 2019 Apr 18;10:843. doi: 10.3389/fmicb.2019.00843. eCollection 2019.


Assessing the Influence of Vegan, Vegetarian and Omnivore Oriented Westernized Dietary Styles on Human Gut Microbiota: A Cross Sectional Study.

Losasso C, Eckert EM, Mastrorilli E, Villiger J, Mancin M, Patuzzi I, Di Cesare A, Cibin V, Barrucci F, Pernthaler J, Corno G, Ricci A.

Front Microbiol. 2018 Mar 5;9:317. doi: 10.3389/fmicb.2018.00317. eCollection 2018.


Priming of microbial microcystin degradation in biomass-fed gravity driven membrane filtration biofilms.

Silva MOD, Blom JF, Yankova Y, Villiger J, Pernthaler J.

Syst Appl Microbiol. 2018 May;41(3):221-231. doi: 10.1016/j.syapm.2017.11.009. Epub 2017 Dec 21.


Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria.

Neuenschwander SM, Ghai R, Pernthaler J, Salcher MM.

ISME J. 2018 Jan;12(1):185-198. doi: 10.1038/ismej.2017.156. Epub 2017 Oct 13.


Letting go: bacterial genome reduction solves the dilemma of adapting to predation mortality in a substrate-restricted environment.

Baumgartner M, Roffler S, Wicker T, Pernthaler J.

ISME J. 2017 Oct;11(10):2258-2266. doi: 10.1038/ismej.2017.87. Epub 2017 Jun 6.


Competition and niche separation of pelagic bacteria in freshwater habitats.

Pernthaler J.

Environ Microbiol. 2017 Jun;19(6):2133-2150. doi: 10.1111/1462-2920.13742. Epub 2017 May 10. Review.


Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach.

Shabarova T, Kasalický V, Šimek K, Nedoma J, Znachor P, Posch T, Pernthaler J, Salcher MM.

Environ Microbiol. 2017 Mar;19(3):1296-1309. doi: 10.1111/1462-2920.13663. Epub 2017 Feb 6.


Protistan predation interferes with bacterial long-term adaptation to substrate restriction by selecting for defence morphotypes.

Baumgartner M, Neu TR, Blom JF, Pernthaler J.

J Evol Biol. 2016 Nov;29(11):2297-2310. doi: 10.1111/jeb.12957. Epub 2016 Sep 1.


Phenology of cryptomonads and the CRY1 lineage in a coastal brackish lagoon (Vistula Lagoon, Baltic Sea).

Piwosz K, Kownacka J, Ameryk A, Zalewski M, Pernthaler J.

J Phycol. 2016 Aug;52(4):626-37. doi: 10.1111/jpy.12424. Epub 2016 Jun 30.


High-throughput determination of dissolved free amino acids in unconcentrated freshwater by ion-pairing liquid chromatography and mass spectrometry.

Horňák K, Schmidheiny H, Pernthaler J.

J Chromatogr A. 2016 Apr 1;1440:85-93. doi: 10.1016/j.chroma.2016.02.045. Epub 2016 Feb 17.


Comparative effects of nodularin and microcystin-LR in zebrafish: 1. Uptake by organic anion transporting polypeptide Oatp1d1 (Slco1d1).

Faltermann S, Prétôt R, Pernthaler J, Fent K.

Aquat Toxicol. 2016 Feb;171:69-76. doi: 10.1016/j.aquatox.2015.11.016.


Comparative effects of nodularin and microcystin-LR in zebrafish: 2. Uptake and molecular effects in eleuthero-embryos and adult liver with focus on endoplasmic reticulum stress.

Faltermann S, Grundler V, Gademann K, Pernthaler J, Fent K.

Aquat Toxicol. 2016 Feb;171:77-87. doi: 10.1016/j.aquatox.2015.12.001. Epub 2015 Dec 8.


Network of Interactions Between Ciliates and Phytoplankton During Spring.

Posch T, Eugster B, Pomati F, Pernthaler J, Pitsch G, Eckert EM.

Front Microbiol. 2015 Nov 20;6:1289. doi: 10.3389/fmicb.2015.01289. eCollection 2015.


Ecology and Distribution of Thaumarchaea in the Deep Hypolimnion of Lake Maggiore.

Coci M, Odermatt N, Salcher MM, Pernthaler J, Corno G.

Archaea. 2015 Aug 25;2015:590434. doi: 10.1155/2015/590434. eCollection 2015.


Bacterial diversity and composition in the fluid of pitcher plants of the genus Nepenthes.

Takeuchi Y, Chaffron S, Salcher MM, Shimizu-Inatsugi R, Kobayashi MJ, Diway B, von Mering C, Pernthaler J, Shimizu KK.

Syst Appl Microbiol. 2015 Jul;38(5):330-9. doi: 10.1016/j.syapm.2015.05.006. Epub 2015 Jun 16.


The ecology of pelagic freshwater methylotrophs assessed by a high-resolution monitoring and isolation campaign.

Salcher MM, Neuenschwander SM, Posch T, Pernthaler J.

ISME J. 2015 Nov;9(11):2442-53. doi: 10.1038/ismej.2015.55. Epub 2015 May 5.


Fluorescence in situ hybridization and sequential catalyzed reporter deposition (2C-FISH) for the flow cytometric sorting of freshwater ultramicrobacteria.

Neuenschwander SM, Salcher MM, Pernthaler J.

Front Microbiol. 2015 Mar 31;6:247. doi: 10.3389/fmicb.2015.00247. eCollection 2015.


Biodegradation of microcystins during gravity-driven membrane (GDM) ultrafiltration.

Kohler E, Villiger J, Posch T, Derlon N, Shabarova T, Morgenroth E, Pernthaler J, Blom JF.

PLoS One. 2014 Nov 4;9(11):e111794. doi: 10.1371/journal.pone.0111794. eCollection 2014.


Integrating phylogeny, geographic niche partitioning and secondary metabolite synthesis in bloom-forming Planktothrix.

Kurmayer R, Blom JF, Deng L, Pernthaler J.

ISME J. 2015 Mar 17;9(4):909-21. doi: 10.1038/ismej.2014.189.


The toxicity and enzyme activity of a chlorine and sulfate containing aeruginosin isolated from a non-microcystin-producing Planktothrix strain.

Kohler E, Grundler V, Häussinger D, Kurmayer R, Gademann K, Pernthaler J, Blom JF.

Harmful Algae. 2014 Oct;39:154-160. doi: 10.1016/j.hal.2014.07.003.


A novel ion-exclusion chromatography-mass spectrometry method to measure concentrations and cycling rates of carbohydrates and amino sugars in freshwaters.

Horňák K, Pernthaler J.

J Chromatogr A. 2014 Oct 24;1365:115-23. doi: 10.1016/j.chroma.2014.09.007. Epub 2014 Sep 16.


Winter bloom of a rare betaproteobacterium in the Arctic Ocean.

Alonso-Sáez L, Zeder M, Harding T, Pernthaler J, Lovejoy C, Bertilsson S, Pedrós-Alió C.

Front Microbiol. 2014 Aug 20;5:425. doi: 10.3389/fmicb.2014.00425. eCollection 2014.


Seasonal growth potential of rare lake water bacteria suggest their disproportional contribution to carbon fluxes.

Neuenschwander SM, Pernthaler J, Posch T, Salcher MM.

Environ Microbiol. 2015 Mar;17(3):781-95. doi: 10.1111/1462-2920.12520. Epub 2014 Jun 30.


Bacterial community structure and dissolved organic matter in repeatedly flooded subsurface karst water pools.

Shabarova T, Villiger J, Morenkov O, Niggemann J, Dittmar T, Pernthaler J.

FEMS Microbiol Ecol. 2014 Jul;89(1):111-26. doi: 10.1111/1574-6941.12339. Epub 2014 May 8.


Bacterial epibionts of Daphnia: a potential route for the transfer of dissolved organic carbon in freshwater food webs.

Eckert EM, Pernthaler J.

ISME J. 2014 Sep;8(9):1808-19. doi: 10.1038/ismej.2014.39. Epub 2014 Apr 3.


Molecular effects of the cyanobacterial toxin cyanopeptolin (CP1020) occurring in algal blooms: global transcriptome analysis in zebrafish embryos.

Faltermann S, Zucchi S, Kohler E, Blom JF, Pernthaler J, Fent K.

Aquat Toxicol. 2014 Apr;149:33-9. doi: 10.1016/j.aquatox.2014.01.018. Epub 2014 Feb 2.


Mass effects meet species sorting: transformations of microbial assemblages in epiphreatic subsurface karst water pools.

Shabarova T, Widmer F, Pernthaler J.

Environ Microbiol. 2013 Sep;15(9):2476-88. doi: 10.1111/1462-2920.12124. Epub 2013 Apr 25.


Environmental dynamics as a structuring factor for microbial carbon utilization in a subtropical coastal lagoon.

Alonso C, Piccini C, Unrein F, Bertoglio F, Conde D, Pernthaler J.

Front Microbiol. 2013 Feb 15;4:14. doi: 10.3389/fmicb.2013.00014. eCollection 2013.


Activity of metazoa governs biofilm structure formation and enhances permeate flux during Gravity-Driven Membrane (GDM) filtration.

Derlon N, Koch N, Eugster B, Posch T, Pernthaler J, Pronk W, Morgenroth E.

Water Res. 2013 Apr 15;47(6):2085-95. doi: 10.1016/j.watres.2013.01.033. Epub 2013 Feb 4.


Grazing resistant freshwater bacteria profit from chitin and cell-wall-derived organic carbon.

Eckert EM, Baumgartner M, Huber IM, Pernthaler J.

Environ Microbiol. 2013 Jul;15(7):2019-30. doi: 10.1111/1462-2920.12083. Epub 2013 Feb 17.


Unveiling distribution patterns of freshwater phytoplankton by a next generation sequencing based approach.

Eiler A, Drakare S, Bertilsson S, Pernthaler J, Peura S, Rofner C, Simek K, Yang Y, Znachor P, Lindström ES.

PLoS One. 2013;8(1):e53516. doi: 10.1371/journal.pone.0053516. Epub 2013 Jan 22.


In situ substrate preferences of abundant bacterioplankton populations in a prealpine freshwater lake.

Salcher MM, Posch T, Pernthaler J.

ISME J. 2013 May;7(5):896-907. doi: 10.1038/ismej.2012.162. Epub 2012 Dec 13.


Fluorescence in situ hybridization (CARD-FISH) of microorganisms in hydrocarbon contaminated aquifer sediment samples.

Tischer K, Zeder M, Klug R, Pernthaler J, Schattenhofer M, Harms H, Wendeberg A.

Syst Appl Microbiol. 2012 Dec;35(8):526-32. doi: 10.1016/j.syapm.2012.01.004. Epub 2012 Mar 16.


Rapid successions affect microbial N-acetyl-glucosamine uptake patterns during a lacustrine spring phytoplankton bloom.

Eckert EM, Salcher MM, Posch T, Eugster B, Pernthaler J.

Environ Microbiol. 2012 Mar;14(3):794-806. doi: 10.1111/j.1462-2920.2011.02639.x. Epub 2011 Nov 14.


Suboptimal light conditions negatively affect the heterotrophy of Planktothrix rubescens but are beneficial for accompanying Limnohabitans spp.

Horňák K, Zeder M, Blom JF, Posch T, Pernthaler J.

Environ Microbiol. 2012 Mar;14(3):765-78. doi: 10.1111/j.1462-2920.2011.02635.x. Epub 2011 Nov 9.


Enrichment of omnivorous cercozoan nanoflagellates from coastal Baltic Sea waters.

Piwosz K, Pernthaler J.

PLoS One. 2011;6(9):e24415. doi: 10.1371/journal.pone.0024415. Epub 2011 Sep 26.


In situ enzyme activity in the dissolved and particulate fraction of the fluid from four pitcher plant species of the genus Nepenthes.

Takeuchi Y, Salcher MM, Ushio M, Shimizu-Inatsugi R, Kobayashi MJ, Diway B, von Mering C, Pernthaler J, Shimizu KK.

PLoS One. 2011;6(9):e25144. doi: 10.1371/journal.pone.0025144. Epub 2011 Sep 16.


A novel algorithm for the determination of bacterial cell volumes that is unbiased by cell morphology.

Zeder M, Kohler E, Zeder L, Pernthaler J.

Microsc Microanal. 2011 Oct;17(5):799-809. doi: 10.1017/S1431927611012104. Epub 2011 Sep 13.


Seasonal bloom dynamics and ecophysiology of the freshwater sister clade of SAR11 bacteria 'that rule the waves' (LD12).

Salcher MM, Pernthaler J, Posch T.

ISME J. 2011 Aug;5(8):1242-52. doi: 10.1038/ismej.2011.8. Epub 2011 Mar 17.


Scent of danger: floc formation by a freshwater bacterium is induced by supernatants from a predator-prey coculture.

Blom JF, Zimmermann YS, Ammann T, Pernthaler J.

Appl Environ Microbiol. 2010 Sep;76(18):6156-63. doi: 10.1128/AEM.01455-10. Epub 2010 Jul 23.


Leucine-to-carbon empirical conversion factor experiments: does bacterial community structure have an influence?

Alonso-Sáez L, Pinhassi J, Pernthaler J, Gasol JM.

Environ Microbiol. 2010 Nov;12(11):2988-97. doi: 10.1111/j.1462-2920.2010.02276.x.


A global network of coexisting microbes from environmental and whole-genome sequence data.

Chaffron S, Rehrauer H, Pernthaler J, von Mering C.

Genome Res. 2010 Jul;20(7):947-59. doi: 10.1101/gr.104521.109. Epub 2010 May 10.


Aggregate formation in a freshwater bacterial strain induced by growth state and conspecific chemical cues.

Blom JF, Horňák K, Simek K, Pernthaler J.

Environ Microbiol. 2010 Sep;12(9):2486-95. doi: 10.1111/j.1462-2920.2010.02222.x. Epub 2010 Apr 19.


Karst pools in subsurface environments: collectors of microbial diversity or temporary residence between habitat types.

Shabarova T, Pernthaler J.

Environ Microbiol. 2010 Apr;12(4):1061-74. doi: 10.1111/j.1462-2920.2009.02151.x. Epub 2010 Jan 27.


Automated quantification and sizing of unbranched filamentous cyanobacteria by model-based object-oriented image analysis.

Zeder M, Van den Wyngaert S, Köster O, Felder KM, Pernthaler J.

Appl Environ Microbiol. 2010 Mar;76(5):1615-22. doi: 10.1128/AEM.02232-09. Epub 2010 Jan 4.


Antibiotic effects of three strains of chrysophytes (Ochromonas, Poterioochromonas) on freshwater bacterial isolates.

Blom JF, Pernthaler J.

FEMS Microbiol Ecol. 2010 Feb;71(2):281-90. doi: 10.1111/j.1574-6941.2009.00800.x. Epub 2009 Oct 23.


Automated quality assessment of autonomously acquired microscopic images of fluorescently stained bacteria.

Zeder M, Kohler E, Pernthaler J.

Cytometry A. 2010 Jan;77(1):76-85. doi: 10.1002/cyto.a.20810.


Seasonal population dynamics and trophic role of planktonic nanoflagellates in coastal surface waters of the Southern Baltic Sea.

Piwosz K, Pernthaler J.

Environ Microbiol. 2010 Feb;12(2):364-77. doi: 10.1111/j.1462-2920.2009.02074.x. Epub 2009 Oct 2.


Alteration of chromophoric dissolved organic matter by solar UV radiation causes rapid changes in bacterial community composition.

Piccini C, Conde D, Pernthaler J, Sommaruga R.

Photochem Photobiol Sci. 2009 Sep;8(9):1321-8. doi: 10.1039/b905040j. Epub 2009 Jul 3.

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