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Items: 1 to 50 of 67

1.

Targeted Proteomics to Study Mitochondrial Biology.

Wolters JC, Permentier HP, Bakker BM, Bischoff R.

Adv Exp Med Biol. 2019;1158:101-117. doi: 10.1007/978-981-13-8367-0_7.

PMID:
31452138
2.

Avian yolk androgens are metabolized rather than taken up by the embryo during the first days of incubation.

Kumar N, van Dam A, Permentier H, van Faassen M, Kema I, Gahr M, Groothuis TGG.

J Exp Biol. 2019 Apr 3;222(Pt 7). pii: jeb193961. doi: 10.1242/jeb.193961.

3.

Bioconjugation of Supramolecular Metallacages to Integrin Ligands for Targeted Delivery of Cisplatin.

Han J, Räder AFB, Reichart F, Aikman B, Wenzel MN, Woods B, Weinmüller M, Ludwig BS, Stürup S, Groothuis GMM, Permentier HP, Bischoff R, Kessler H, Horvatovich P, Casini A.

Bioconjug Chem. 2018 Nov 21;29(11):3856-3865. doi: 10.1021/acs.bioconjchem.8b00682. Epub 2018 Nov 13.

PMID:
30380298
4.

One- vs two-phase extraction: re-evaluation of sample preparation procedures for untargeted lipidomics in plasma samples.

Gil A, Zhang W, Wolters JC, Permentier H, Boer T, Horvatovich P, Heiner-Fokkema MR, Reijngoud DJ, Bischoff R.

Anal Bioanal Chem. 2018 Sep;410(23):5859-5870. doi: 10.1007/s00216-018-1200-x. Epub 2018 Jul 2.

5.

Running-wheel activity delays mitochondrial respiratory flux decline in aging mouse muscle via a post-transcriptional mechanism.

Stolle S, Ciapaite J, Reijne AC, Talarovicova A, Wolters JC, Aguirre-Gamboa R, van der Vlies P, de Lange K, Neerincx PB, van der Vries G, Deelen P, Swertz MA, Li Y, Bischoff R, Permentier HP, Horvatovitch PL, Groen AK, van Dijk G, Reijngoud DJ, Bakker BM.

Aging Cell. 2018 Feb;17(1). doi: 10.1111/acel.12700. Epub 2017 Nov 9.

6.

Specific Affinity Enrichment of Electrochemically Cleaved Peptides Based on Cu(II)-Mediated Spirolactone Tagging.

Zhang T, de Vries MP, Permentier HP, Bischoff R.

Anal Chem. 2017 Jul 5;89(13):7123-7129. doi: 10.1021/acs.analchem.7b01039. Epub 2017 Jun 19.

7.

Bioconjugation strategies to couple supramolecular exo-functionalized palladium cages to peptides for biomedical applications.

Han J, Schmidt A, Zhang T, Permentier H, Groothuis GM, Bischoff R, Kühn FE, Horvatovich P, Casini A.

Chem Commun (Camb). 2017 Jan 24;53(8):1405-1408. doi: 10.1039/c6cc08937b.

PMID:
28079225
8.

The degradation of nucleotide triphosphates extracted under boiling ethanol conditions is prevented by the yeast cellular matrix.

Gil A, Siegel D, Bonsing-Vedelaar S, Permentier H, Reijngoud DJ, Dekker F, Bischoff R.

Metabolomics. 2017;13(1):1. Epub 2016 Nov 28.

9.

Living on the edge: substrate competition explains loss of robustness in mitochondrial fatty-acid oxidation disorders.

van Eunen K, Volker-Touw CM, Gerding A, Bleeker A, Wolters JC, van Rijt WJ, Martines AM, Niezen-Koning KE, Heiner RM, Permentier H, Groen AK, Reijngoud DJ, Derks TG, Bakker BM.

BMC Biol. 2016 Dec 7;14(1):107.

10.

Radiation chemical studies of Gly-Met-Gly in aqueous solution.

Barata-Vallejo S, Ferreri C, Zhang T, Permentier H, Bischoff R, Bobrowski K, Chatgilialoglu C.

Free Radic Res. 2016 Nov;50(sup1):S24-S39. Epub 2016 Oct 25.

PMID:
27592721
11.

Electrochemical Protein Cleavage in a Microfluidic Cell with Integrated Boron Doped Diamond Electrodes.

van den Brink FT, Zhang T, Ma L, Bomer J, Odijk M, Olthuis W, Permentier HP, Bischoff R, van den Berg A.

Anal Chem. 2016 Sep 20;88(18):9190-8. doi: 10.1021/acs.analchem.6b02413. Epub 2016 Aug 26.

PMID:
27563730
12.

Translational Targeted Proteomics Profiling of Mitochondrial Energy Metabolic Pathways in Mouse and Human Samples.

Wolters JC, Ciapaite J, van Eunen K, Niezen-Koning KE, Matton A, Porte RJ, Horvatovich P, Bakker BM, Bischoff R, Permentier HP.

J Proteome Res. 2016 Sep 2;15(9):3204-13. doi: 10.1021/acs.jproteome.6b00419. Epub 2016 Aug 5.

PMID:
27447838
13.

Efficient and Selective Chemical Labeling of Electrochemically Generated Peptides Based on Spirolactone Chemistry.

Zhang T, Niu X, Yuan T, Tessari M, de Vries MP, Permentier HP, Bischoff R.

Anal Chem. 2016 Jun 21;88(12):6465-71. doi: 10.1021/acs.analchem.6b01154. Epub 2016 Jun 10.

PMID:
27247048
14.

Microbial Flavoprotein Monooxygenases as Mimics of Mammalian Flavin-Containing Monooxygenases for the Enantioselective Preparation of Drug Metabolites.

Gul T, Krzek M, Permentier HP, Fraaije MW, Bischoff R.

Drug Metab Dispos. 2016 Aug;44(8):1270-6. doi: 10.1124/dmd.115.069104. Epub 2016 Mar 16.

PMID:
26984198
15.

Comparison of TiO2 photocatalysis, electrochemically assisted Fenton reaction and direct electrochemistry for simulation of phase I metabolism reactions of drugs.

Ruokolainen M, Gul T, Permentier H, Sikanen T, Kostiainen R, Kotiaho T.

Eur J Pharm Sci. 2016 Feb 15;83:36-44. doi: 10.1016/j.ejps.2015.12.012. Epub 2015 Dec 10.

PMID:
26690045
16.

Covalent immobilization of a flavoprotein monooxygenase via its flavin cofactor.

Krzek M, van Beek HL, Permentier HP, Bischoff R, Fraaije MW.

Enzyme Microb Technol. 2016 Jan;82:138-143. doi: 10.1016/j.enzmictec.2015.09.006. Epub 2015 Sep 30.

PMID:
26672460
17.

Genomic variability and protein species - Improving sequence coverage for proteogenomics.

Bischoff R, Permentier H, Guryev V, Horvatovich P.

J Proteomics. 2016 Feb 16;134:25-36. doi: 10.1016/j.jprot.2015.09.021. Epub 2015 Sep 21. Review.

PMID:
26394375
18.

Stability of energy metabolites-An often overlooked issue in metabolomics studies: A review.

Gil A, Siegel D, Permentier H, Reijngoud DJ, Dekker F, Bischoff R.

Electrophoresis. 2015 Sep;36(18):2156-2169. doi: 10.1002/elps.201500031. Epub 2015 Jul 6. Review.

PMID:
25959207
19.

In situ surface-enhanced Raman spectroelectrochemical analysis system with a hemin modified nanostructured gold surface.

Yuan T, Le Thi Ngoc L, van Nieuwkasteele J, Odijk M, van den Berg A, Permentier H, Bischoff R, Carlen ET.

Anal Chem. 2015 Mar 3;87(5):2588-92. doi: 10.1021/ac504136j. Epub 2015 Feb 13.

PMID:
25643066
20.

Functional and structural characterization of an unusual cofactor-independent oxygenase.

Baas BJ, Poddar H, Geertsema EM, Rozeboom HJ, de Vries MP, Permentier HP, Thunnissen AM, Poelarends GJ.

Biochemistry. 2015 Feb 10;54(5):1219-32. doi: 10.1021/bi501200j. Epub 2015 Jan 22.

PMID:
25565350
21.

Effect of introducing a disulphide bond between the A and C domains on the activity and stability of Saccharomycopsis fibuligera R64 α-amylase.

Natalia D, Vidilaseris K, Ismaya WT, Puspasari F, Prawira I, Hasan K, Fibriansah G, Permentier HP, Nurachman Z, Subroto T, Dijkstra BW, Soemitro S.

J Biotechnol. 2015 Feb 10;195:8-14. doi: 10.1016/j.jbiotec.2014.12.002. Epub 2014 Dec 20.

PMID:
25533400
22.

3D-printed paper spray ionization cartridge with fast wetting and continuous solvent supply features.

Salentijn GI, Permentier HP, Verpoorte E.

Anal Chem. 2014 Dec 2;86(23):11657-65. doi: 10.1021/ac502785j. Epub 2014 Nov 19.

PMID:
25409532
23.

Integrated quantification and identification of aldehydes and ketones in biological samples.

Siegel D, Meinema AC, Permentier H, Hopfgartner G, Bischoff R.

Anal Chem. 2014 May 20;86(10):5089-100. doi: 10.1021/ac500810r. Epub 2014 May 5.

PMID:
24745975
24.

Chemical and technical challenges in the analysis of central carbon metabolites by liquid-chromatography mass spectrometry.

Siegel D, Permentier H, Reijngoud DJ, Bischoff R.

J Chromatogr B Analyt Technol Biomed Life Sci. 2014 Sep 1;966:21-33. doi: 10.1016/j.jchromb.2013.11.022. Epub 2013 Nov 26. Review.

PMID:
24326023
25.

Boron-doped diamond electrodes for the electrochemical oxidation and cleavage of peptides.

Roeser J, Alting NF, Permentier HP, Bruins AP, Bischoff R.

Anal Chem. 2013 Jul 16;85(14):6626-32. doi: 10.1021/ac303795c. Epub 2013 Jun 25.

PMID:
23763302
26.
27.

The formation of oxytocin dimers is suppressed by the zinc-aspartate-oxytocin complex.

Avanti C, Hinrichs WLJ, Casini A, Eissens AC, Van Dam A, Kedrov A, Driessen AJM, Frijlink HW, Permentier HP.

J Pharm Sci. 2013 Jun;102(6):1734-1741. doi: 10.1002/jps.23546. Epub 2013 Apr 15.

PMID:
23589380
28.

Chemical labeling of electrochemically cleaved peptides.

Roeser J, Alting NF, Permentier HP, Bruins AP, Bischoff RP.

Rapid Commun Mass Spectrom. 2013 Feb 28;27(4):546-52. doi: 10.1002/rcm.6479.

PMID:
23322661
29.

Long term myriocin treatment increases MRP1 transport activity.

Meszaros P, Klappe K, van Dam A, Ivanova PT, Milne SB, Myers DS, Brown HA, Permentier H, Hoekstra D, Kok JW.

Int J Biochem Cell Biol. 2013 Feb;45(2):326-34. doi: 10.1016/j.biocel.2012.11.009. Epub 2012 Nov 23.

30.

Electrocatalytic oxidation of hydrogen peroxide on a platinum electrode in the imitation of oxidative drug metabolism of lidocaine.

Nouri-Nigjeh E, Bruins AP, Bischoff R, Permentier HP.

Analyst. 2012 Oct 21;137(20):4698-702. doi: 10.1039/c2an35388a.

PMID:
22929863
31.

Effect of iTRAQ labeling on the relative abundance of peptide fragment ions produced by MALDI-MS/MS.

Gandhi T, Puri P, Fusetti F, Breitling R, Poolman B, Permentier HP.

J Proteome Res. 2012 Aug 3;11(8):4044-51. doi: 10.1021/pr300083x. Epub 2012 Jul 20.

PMID:
22770492
32.

Is specific IgE antibody analysis feasible for the diagnosis of methylenediphenyl diisocyanate-induced occupational asthma?

Budnik LT, Preisser AM, Permentier H, Baur X.

Int Arch Occup Environ Health. 2013 May;86(4):417-30. doi: 10.1007/s00420-012-0772-6. Epub 2012 Apr 28.

33.

A new strategy to stabilize oxytocin in aqueous solutions: II. Suppression of cysteine-mediated intermolecular reactions by a combination of divalent metal ions and citrate.

Avanti C, Permentier HP, Dam Av, Poole R, Jiskoot W, Frijlink HW, Hinrichs WL.

Mol Pharm. 2012 Mar 5;9(3):554-62. doi: 10.1021/mp200622z. Epub 2012 Jan 31.

PMID:
22257021
34.

Electrochemical oxidation by square-wave potential pulses in the imitation of phenacetin to acetaminophen biotransformation.

Nouri-Nigjeh E, Bischoff R, Bruins AP, Permentier HP.

Analyst. 2011 Dec 7;136(23):5064-7. doi: 10.1039/c1an15643h. Epub 2011 Oct 7.

PMID:
21984979
35.

Escherichia coli peptide binding protein OppA has a preference for positively charged peptides.

Klepsch MM, Kovermann M, Löw C, Balbach J, Permentier HP, Fusetti F, de Gier JW, Slotboom DJ, Berntsson RP.

J Mol Biol. 2011 Nov 18;414(1):75-85. doi: 10.1016/j.jmb.2011.09.043. Epub 2011 Oct 1.

PMID:
21983341
36.

The response of Lactococcus lactis to membrane protein production.

Marreddy RK, Pinto JP, Wolters JC, Geertsma ER, Fusetti F, Permentier HP, Kuipers OP, Kok J, Poolman B.

PLoS One. 2011;6(8):e24060. doi: 10.1371/journal.pone.0024060. Epub 2011 Aug 31.

37.

Electrochemical oxidation by square-wave potential pulses in the imitation of oxidative drug metabolism.

Nouri-Nigjeh E, Permentier HP, Bischoff R, Bruins AP.

Anal Chem. 2011 Jul 15;83(14):5519-25. doi: 10.1021/ac200897p. Epub 2011 Jun 27.

PMID:
21644593
38.

Electrochemistry in the mimicry of oxidative drug metabolism by cytochrome P450s.

Nouri-Nigjeh E, Bischoff R, Bruins AP, Permentier HP.

Curr Drug Metab. 2011 May;12(4):359-71. Review.

PMID:
21395527
39.

Apex peptide elution chain selection: a new strategy for selecting precursors in 2D-LC-MALDI-TOF/TOF experiments on complex biological samples.

Gandhi T, Fusetti F, Wiederhold E, Breitling R, Poolman B, Permentier HP.

J Proteome Res. 2010 Nov 5;9(11):5922-8. doi: 10.1021/pr1006944. Epub 2010 Sep 30.

PMID:
20836568
40.

Lidocaine oxidation by electrogenerated reactive oxygen species in the light of oxidative drug metabolism.

Nouri-Nigjeh E, Permentier HP, Bischoff R, Bruins AP.

Anal Chem. 2010 Sep 15;82(18):7625-33. doi: 10.1021/ac101364s.

PMID:
20735006
41.

Electrochemical oxidation and cleavage of tyrosine- and tryptophan-containing tripeptides.

Roeser J, Permentier HP, Bruins AP, Bischoff R.

Anal Chem. 2010 Sep 15;82(18):7556-65. doi: 10.1021/ac101086w.

PMID:
20726506
42.

Extensive sphingolipid depletion does not affect lipid raft integrity or lipid raft localization and efflux function of the ABC transporter MRP1.

Klappe K, Dijkhuis AJ, Hummel I, van Dam A, Ivanova PT, Milne SB, Myers DS, Brown HA, Permentier H, Kok JW.

Biochem J. 2010 Sep 15;430(3):519-29. doi: 10.1042/BJ20091882.

43.

Amino acid accumulation limits the overexpression of proteins in Lactococcus lactis.

Marreddy RK, Geertsma ER, Permentier HP, Pinto JP, Kok J, Poolman B.

PLoS One. 2010 Apr 26;5(4):e10317. doi: 10.1371/journal.pone.0010317.

44.

Oxidative protein labeling in mass-spectrometry-based proteomics.

Roeser J, Bischoff R, Bruins AP, Permentier HP.

Anal Bioanal Chem. 2010 Aug;397(8):3441-55. doi: 10.1007/s00216-010-3471-8. Epub 2010 Feb 13. Review.

45.

The yeast vacuolar membrane proteome.

Wiederhold E, Gandhi T, Permentier HP, Breitling R, Poolman B, Slotboom DJ.

Mol Cell Proteomics. 2009 Feb;8(2):380-92. doi: 10.1074/mcp.M800372-MCP200. Epub 2008 Nov 10.

46.

Inactivation of epoxide hydrolase by catalysis-induced formation of isoaspartate.

van Loo B, Permentier HP, Kingma J, Baldascini H, Janssen DB.

FEBS Lett. 2008 May 14;582(11):1581-6. doi: 10.1016/j.febslet.2008.04.001. Epub 2008 Apr 10.

47.

Electrochemistry-mass spectrometry in drug metabolism and protein research.

Permentier HP, Bruins AP, Bischoff R.

Mini Rev Med Chem. 2008 Jan;8(1):46-56. Review.

PMID:
18220984
48.

Lactococcus lactis as expression host for the biosynthetic incorporation of tryptophan analogues into recombinant proteins.

El Khattabi M, van Roosmalen ML, Jager D, Metselaar H, Permentier H, Leenhouts K, Broos J.

Biochem J. 2008 Jan 1;409(1):193-8.

PMID:
17910535
49.

Characterization and alkane oxidation activity of a diastereopure seven-coordinate iron(III) alkylperoxo complex.

Gosiewska S, van Faassen EE, Permentier HP, Bruins AP, van Koten G, Gebbink RJ.

Dalton Trans. 2007 Aug 21;(31):3365-8. Epub 2007 Jun 26. Erratum in: Dalton Trans. 2008 Dec 28;(48):7038. van Faassen, Ernst E [added].

PMID:
17664972
50.

Flavin binding to the high affinity riboflavin transporter RibU.

Duurkens RH, Tol MB, Geertsma ER, Permentier HP, Slotboom DJ.

J Biol Chem. 2007 Apr 6;282(14):10380-6. Epub 2007 Feb 8.

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