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Items: 1 to 50 of 76

1.

Heterogeneous local dynamics revealed by classification analysis of spatially disaggregated time series data.

Perkins TA, Rodriguez-Barraquer I, Manore C, Siraj AS, España G, Barker CM, Johansson MA, Reiner RC Jr.

Epidemics. 2019 Dec;29:100357. doi: 10.1016/j.epidem.2019.100357. Epub 2019 Jul 22.

2.

Dengue illness impacts daily human mobility patterns in Iquitos, Peru.

Schaber KL, Paz-Soldan VA, Morrison AC, Elson WHD, Rothman AL, Mores CN, Astete-Vega H, Scott TW, Waller LA, Kitron U, Elder JP, Barker CM, Perkins TA, Vazquez-Prokopec GM.

PLoS Negl Trop Dis. 2019 Sep 23;13(9):e0007756. doi: 10.1371/journal.pntd.0007756. eCollection 2019 Sep.

3.

Travel Surveillance and Genomics Uncover a Hidden Zika Outbreak during the Waning Epidemic.

Grubaugh ND, Saraf S, Gangavarapu K, Watts A, Tan AL, Oidtman RJ, Ladner JT, Oliveira G, Matteson NL, Kraemer MUG, Vogels CBF, Hentoff A, Bhatia D, Stanek D, Scott B, Landis V, Stryker I, Cone MR, Kopp EW 4th, Cannons AC, Heberlein-Larson L, White S, Gillis LD, Ricciardi MJ, Kwal J, Lichtenberger PK, Magnani DM, Watkins DI, Palacios G, Hamer DH; GeoSentinel Surveillance Network, Gardner LM, Perkins TA, Baele G, Khan K, Morrison A, Isern S, Michael SF, Andersen KG.

Cell. 2019 Aug 22;178(5):1057-1071.e11. doi: 10.1016/j.cell.2019.07.018.

PMID:
31442400
4.

Model-based assessment of public health impact and cost-effectiveness of dengue vaccination following screening for prior exposure.

España G, Yao Y, Anderson KB, Fitzpatrick MC, Smith DL, Morrison AC, Wilder-Smith A, Scott TW, Perkins TA.

PLoS Negl Trop Dis. 2019 Jul 1;13(7):e0007482. doi: 10.1371/journal.pntd.0007482. eCollection 2019 Jul.

5.

Downgrading disease transmission risk estimates using terminal importations.

Fox SJ, Bellan SE, Perkins TA, Johansson MA, Meyers LA.

PLoS Negl Trop Dis. 2019 Jun 14;13(6):e0007395. doi: 10.1371/journal.pntd.0007395. eCollection 2019 Jun.

6.

Estimating the impact of city-wide Aedes aegypti population control: An observational study in Iquitos, Peru.

Reiner RC Jr, Stoddard ST, Vazquez-Prokopec GM, Astete H, Perkins TA, Sihuincha M, Stancil JD, Smith DL, Kochel TJ, Halsey ES, Kitron U, Morrison AC, Scott TW.

PLoS Negl Trop Dis. 2019 May 30;13(5):e0007255. doi: 10.1371/journal.pntd.0007255. eCollection 2019 May.

7.

Publisher Correction: Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus.

Kraemer MUG, Reiner RC Jr, Brady OJ, Messina JP, Gilbert M, Pigott DM, Yi D, Johnson K, Earl L, Marczak LB, Shirude S, Weaver ND, Bisanzio D, Perkins TA, Lai S, Lu X, Jones P, Coelho GE, Carvalho RG, Van Bortel W, Marsboom C, Hendrickx G, Schaffner F, Moore CG, Nax HH, Bengtsson L, Wetter E, Tatem AJ, Brownstein JS, Smith DL, Lambrechts L, Cauchemez S, Linard C, Faria NR, Pybus OG, Scott TW, Liu Q, Yu H, Wint GRW, Hay SI, Golding N.

Nat Microbiol. 2019 May;4(5):901. doi: 10.1038/s41564-019-0440-7.

PMID:
30962571
8.

Publisher Correction: Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus.

Kraemer MUG, Reiner RC Jr, Brady OJ, Messina JP, Gilbert M, Pigott DM, Yi D, Johnson K, Earl L, Marczak LB, Shirude S, Weaver ND, Bisanzio D, Perkins TA, Lai S, Lu X, Jones P, Coelho GE, Carvalho RG, Van Bortel W, Marsboom C, Hendrickx G, Schaffner F, Moore CG, Nax HH, Bengtsson L, Wetter E, Tatem AJ, Brownstein JS, Smith DL, Lambrechts L, Cauchemez S, Linard C, Faria NR, Pybus OG, Scott TW, Liu Q, Yu H, Wint GRW, Hay SI, Golding N.

Nat Microbiol. 2019 May;4(5):900. doi: 10.1038/s41564-019-0429-2.

PMID:
30903094
9.

An agent-based model of dengue virus transmission shows how uncertainty about breakthrough infections influences vaccination impact projections.

Perkins TA, Reiner RC Jr, España G, Ten Bosch QA, Verma A, Liebman KA, Paz-Soldan VA, Elder JP, Morrison AC, Stoddard ST, Kitron U, Vazquez-Prokopec GM, Scott TW, Smith DL.

PLoS Comput Biol. 2019 Mar 20;15(3):e1006710. doi: 10.1371/journal.pcbi.1006710. eCollection 2019 Mar.

10.

Letter to the editor in response to 'Reconstruction and prediction of viral disease epidemics'.

Perkins TA.

Epidemiol Infect. 2019 Jan;147:e98. doi: 10.1017/S095026881900013X. No abstract available.

11.

Inter-annual variation in seasonal dengue epidemics driven by multiple interacting factors in Guangzhou, China.

Oidtman RJ, Lai S, Huang Z, Yang J, Siraj AS, Reiner RC Jr, Tatem AJ, Perkins TA, Yu H.

Nat Commun. 2019 Mar 8;10(1):1148. doi: 10.1038/s41467-019-09035-x.

12.

Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus.

Kraemer MUG, Reiner RC Jr, Brady OJ, Messina JP, Gilbert M, Pigott DM, Yi D, Johnson K, Earl L, Marczak LB, Shirude S, Davis Weaver N, Bisanzio D, Perkins TA, Lai S, Lu X, Jones P, Coelho GE, Carvalho RG, Van Bortel W, Marsboom C, Hendrickx G, Schaffner F, Moore CG, Nax HH, Bengtsson L, Wetter E, Tatem AJ, Brownstein JS, Smith DL, Lambrechts L, Cauchemez S, Linard C, Faria NR, Pybus OG, Scott TW, Liu Q, Yu H, Wint GRW, Hay SI, Golding N.

Nat Microbiol. 2019 May;4(5):854-863. doi: 10.1038/s41564-019-0376-y. Epub 2019 Mar 4. Erratum in: Nat Microbiol. 2019 Mar 21;:. Nat Microbiol. 2019 Apr 8;:.

13.

Biased efficacy estimates in phase-III dengue vaccine trials due to heterogeneous exposure and differential detectability of primary infections across trial arms.

España G, Hogea C, Guignard A, Ten Bosch QA, Morrison AC, Smith DL, Scott TW, Schmidt A, Perkins TA.

PLoS One. 2019 Jan 25;14(1):e0210041. doi: 10.1371/journal.pone.0210041. eCollection 2019.

14.

Arbovirus coinfection and co-transmission: A neglected public health concern?

Vogels CBF, Rückert C, Cavany SM, Perkins TA, Ebel GD, Grubaugh ND.

PLoS Biol. 2019 Jan 22;17(1):e3000130. doi: 10.1371/journal.pbio.3000130. eCollection 2019 Jan.

15.

Local and regional dynamics of chikungunya virus transmission in Colombia: the role of mismatched spatial heterogeneity.

Moore SM, Ten Bosch QA, Siraj AS, Soda KJ, España G, Campo A, Gómez S, Salas D, Raybaud B, Wenger E, Welkhoff P, Perkins TA.

BMC Med. 2018 Aug 30;16(1):152. doi: 10.1186/s12916-018-1127-2.

16.

Implementation and applications of EMOD, an individual-based multi-disease modeling platform.

Bershteyn A, Gerardin J, Bridenbecker D, Lorton CW, Bloedow J, Baker RS, Chabot-Couture G, Chen Y, Fischle T, Frey K, Gauld JS, Hu H, Izzo AS, Klein DJ, Lukacevic D, McCarthy KA, Miller JC, Ouedraogo AL, Perkins TA, Steinkraus J, Ten Bosch QA, Ting HF, Titova S, Wagner BG, Welkhoff PA, Wenger EA, Wiswell CN; Institute for Disease Modeling.

Pathog Dis. 2018 Jul 1;76(5). pii: fty059. doi: 10.1093/femspd/fty059.

17.

Model-based analysis of experimental data from interconnected, row-configured huts elucidates multifaceted effects of a volatile chemical on Aedes aegypti mosquitoes.

Ten Bosch QA, Castro-Llanos F, Manda H, Morrison AC, Grieco JP, Achee NL, Perkins TA.

Parasit Vectors. 2018 Jun 26;11(1):365. doi: 10.1186/s13071-018-2919-0.

18.

Contributions from the silent majority dominate dengue virus transmission.

Ten Bosch QA, Clapham HE, Lambrechts L, Duong V, Buchy P, Althouse BM, Lloyd AL, Waller LA, Morrison AC, Kitron U, Vazquez-Prokopec GM, Scott TW, Perkins TA.

PLoS Pathog. 2018 May 3;14(5):e1006965. doi: 10.1371/journal.ppat.1006965. eCollection 2018 May.

19.

Spatiotemporal incidence of Zika and associated environmental drivers for the 2015-2016 epidemic in Colombia.

Siraj AS, Rodriguez-Barraquer I, Barker CM, Tejedor-Garavito N, Harding D, Lorton C, Lukacevic D, Oates G, Espana G, Kraemer MUG, Manore C, Johansson MA, Tatem AJ, Reiner RC, Perkins TA.

Sci Data. 2018 Apr 24;5:180073. doi: 10.1038/sdata.2018.73.

20.

Inferences about spatiotemporal variation in dengue virus transmission are sensitive to assumptions about human mobility: a case study using geolocated tweets from Lahore, Pakistan.

Kraemer MUG, Bisanzio D, Reiner RC, Zakar R, Hawkins JB, Freifeld CC, Smith DL, Hay SI, Brownstein JS, Perkins TA.

EPJ Data Sci. 2018;7(1):16. doi: 10.1140/epjds/s13688-018-0144-x. Epub 2018 Jun 11.

21.

Assessing the population at risk of Zika virus in Asia - is the emergency really over?

Siraj AS, Perkins TA.

BMJ Glob Health. 2017 Sep 25;2(3):e000309. doi: 10.1136/bmjgh-2017-000309. eCollection 2017. Review.

22.

Project DRIVE: A Compendium of Cancer Dependencies and Synthetic Lethal Relationships Uncovered by Large-Scale, Deep RNAi Screening.

McDonald ER 3rd, de Weck A, Schlabach MR, Billy E, Mavrakis KJ, Hoffman GR, Belur D, Castelletti D, Frias E, Gampa K, Golji J, Kao I, Li L, Megel P, Perkins TA, Ramadan N, Ruddy DA, Silver SJ, Sovath S, Stump M, Weber O, Widmer R, Yu J, Yu K, Yue Y, Abramowski D, Ackley E, Barrett R, Berger J, Bernard JL, Billig R, Brachmann SM, Buxton F, Caothien R, Caushi JX, Chung FS, Cortés-Cros M, deBeaumont RS, Delaunay C, Desplat A, Duong W, Dwoske DA, Eldridge RS, Farsidjani A, Feng F, Feng J, Flemming D, Forrester W, Galli GG, Gao Z, Gauter F, Gibaja V, Haas K, Hattenberger M, Hood T, Hurov KE, Jagani Z, Jenal M, Johnson JA, Jones MD, Kapoor A, Korn J, Liu J, Liu Q, Liu S, Liu Y, Loo AT, Macchi KJ, Martin T, McAllister G, Meyer A, Mollé S, Pagliarini RA, Phadke T, Repko B, Schouwey T, Shanahan F, Shen Q, Stamm C, Stephan C, Stucke VM, Tiedt R, Varadarajan M, Venkatesan K, Vitari AC, Wallroth M, Weiler J, Zhang J, Mickanin C, Myer VE, Porter JA, Lai A, Bitter H, Lees E, Keen N, Kauffmann A, Stegmeier F, Hofmann F, Schmelzle T, Sellers WR.

Cell. 2017 Jul 27;170(3):577-592.e10. doi: 10.1016/j.cell.2017.07.005.

23.

Temperature modulates dengue virus epidemic growth rates through its effects on reproduction numbers and generation intervals.

Siraj AS, Oidtman RJ, Huber JH, Kraemer MUG, Brady OJ, Johansson MA, Perkins TA.

PLoS Negl Trop Dis. 2017 Jul 19;11(7):e0005797. doi: 10.1371/journal.pntd.0005797. eCollection 2017 Jul.

24.

Retracing Zika's footsteps across the Americas with computational modeling.

Perkins TA.

Proc Natl Acad Sci U S A. 2017 May 30;114(22):5558-5560. doi: 10.1073/pnas.1705969114. Epub 2017 May 22. No abstract available.

25.

Erratum: Model-based projections of Zika virus infections in childbearing women in the Americas.

Perkins TA, Siraj AS, Ruktanonchai CW, Kraemer MU, Tatem AJ.

Nat Microbiol. 2017 Mar 20;2:17051. doi: 10.1038/nmicrobiol.2017.51. No abstract available.

PMID:
28319087
26.

Pokémon Go and Exposure to Mosquito-Borne Diseases: How Not to Catch 'Em All.

Oidtman RJ, Christofferson RC, Ten Bosch QA, Espana G, Kraemer MU, Tatem A, Barker CM, Perkins TA.

PLoS Curr. 2016 Nov 15;8. pii: ecurrents.outbreaks.2d885b05c7e06a9f72e4656d56b043cd. doi: 10.1371/currents.outbreaks.2d885b05c7e06a9f72e4656d56b043cd.

27.

The Long-Term Safety, Public Health Impact, and Cost-Effectiveness of Routine Vaccination with a Recombinant, Live-Attenuated Dengue Vaccine (Dengvaxia): A Model Comparison Study.

Flasche S, Jit M, Rodríguez-Barraquer I, Coudeville L, Recker M, Koelle K, Milne G, Hladish TJ, Perkins TA, Cummings DA, Dorigatti I, Laydon DJ, España G, Kelso J, Longini I, Lourenco J, Pearson CA, Reiner RC, Mier-Y-Terán-Romero L, Vannice K, Ferguson N.

PLoS Med. 2016 Nov 29;13(11):e1002181. doi: 10.1371/journal.pmed.1002181. eCollection 2016 Nov.

28.

After the games are over: life-history trade-offs drive dispersal attenuation following range expansion.

Perkins TA, Boettiger C, Phillips BL.

Ecol Evol. 2016 Aug 18;6(18):6425-6434. eCollection 2016 Sep.

29.

Quantitative, model-based estimates of variability in the generation and serial intervals of Plasmodium falciparum malaria.

Huber JH, Johnston GL, Greenhouse B, Smith DL, Perkins TA.

Malar J. 2016 Sep 22;15(1):490.

30.

An Integrated Passive Phase-Shift Keying Modulator for Biomedical Implants With Power Telemetry Over a Single Inductive Link.

Jiang D, Cirmirakis D, Schormans M, Perkins TA, Donaldson N, Demosthenous A.

IEEE Trans Biomed Circuits Syst. 2017 Feb;11(1):64-77. doi: 10.1109/TBCAS.2016.2580513. Epub 2016 Sep 15.

PMID:
27654977
31.

Model-based projections of Zika virus infections in childbearing women in the Americas.

Perkins TA, Siraj AS, Ruktanonchai CW, Kraemer MU, Tatem AJ.

Nat Microbiol. 2016 Jul 25;1(9):16126. doi: 10.1038/nmicrobiol.2016.126. Erratum in: Nat Microbiol. 2017 Mar 20;2:17051.

PMID:
27562260
32.

Calling in sick: impacts of fever on intra-urban human mobility.

Perkins TA, Paz-Soldan VA, Stoddard ST, Morrison AC, Forshey BM, Long KC, Halsey ES, Kochel TJ, Elder JP, Kitron U, Scott TW, Vazquez-Prokopec GM.

Proc Biol Sci. 2016 Jul 13;283(1834). pii: 20160390. doi: 10.1098/rspb.2016.0390.

33.

Quantifying the Epidemiological Impact of Vector Control on Dengue.

Reiner RC Jr, Achee N, Barrera R, Burkot TR, Chadee DD, Devine GJ, Endy T, Gubler D, Hombach J, Kleinschmidt I, Lenhart A, Lindsay SW, Longini I, Mondy M, Morrison AC, Perkins TA, Vazquez-Prokopec G, Reiter P, Ritchie SA, Smith DL, Strickman D, Scott TW.

PLoS Negl Trop Dis. 2016 May 26;10(5):e0004588. doi: 10.1371/journal.pntd.0004588. eCollection 2016 May. Review. No abstract available.

34.

Coupled Heterogeneities and Their Impact on Parasite Transmission and Control.

Vazquez-Prokopec GM, Perkins TA, Waller LA, Lloyd AL, Reiner RC Jr, Scott TW, Kitron U.

Trends Parasitol. 2016 May;32(5):356-367. doi: 10.1016/j.pt.2016.01.001. Epub 2016 Feb 2. Review.

35.

Vectorial capacity and vector control: reconsidering sensitivity to parameters for malaria elimination.

Brady OJ, Godfray HC, Tatem AJ, Gething PW, Cohen JM, McKenzie FE, Perkins TA, Reiner RC Jr, Tusting LS, Sinka ME, Moyes CL, Eckhoff PA, Scott TW, Lindsay SW, Hay SI, Smith DL.

Trans R Soc Trop Med Hyg. 2016 Feb;110(2):107-17. doi: 10.1093/trstmh/trv113.

36.

Mapping residual transmission for malaria elimination.

Reiner RC, Le Menach A, Kunene S, Ntshalintshali N, Hsiang MS, Perkins TA, Greenhouse B, Tatem AJ, Cohen JM, Smith DL.

Elife. 2015 Dec 29;4. pii: e09520. doi: 10.7554/eLife.09520.

37.

Big city, small world: density, contact rates, and transmission of dengue across Pakistan.

Kraemer MU, Perkins TA, Cummings DA, Zakar R, Hay SI, Smith DL, Reiner RC Jr.

J R Soc Interface. 2015 Oct 6;12(111):20150468. doi: 10.1098/rsif.2015.0468.

38.

A critical assessment of vector control for dengue prevention.

Achee NL, Gould F, Perkins TA, Reiner RC Jr, Morrison AC, Ritchie SA, Gubler DJ, Teyssou R, Scott TW.

PLoS Negl Trop Dis. 2015 May 7;9(5):e0003655. doi: 10.1371/journal.pntd.0003655. eCollection 2015 May. Review.

39.

The changing epidemiology of dengue in China, 1990-2014: a descriptive analysis of 25 years of nationwide surveillance data.

Lai S, Huang Z, Zhou H, Anders KL, Perkins TA, Yin W, Li Y, Mu D, Chen Q, Zhang Z, Qiu Y, Wang L, Zhang H, Zeng L, Ren X, Geng M, Li Z, Tatem AJ, Hay SI, Yu H.

BMC Med. 2015 Apr 28;13:100. doi: 10.1186/s12916-015-0336-1.

40.

Estimating drivers of autochthonous transmission of chikungunya virus in its invasion of the americas.

Perkins TA, Metcalf CJ, Grenfell BT, Tatem AJ.

PLoS Curr. 2015 Feb 10;7. pii: ecurrents.outbreaks.a4c7b6ac10e0420b1788c9767946d1fc. doi: 10.1371/currents.outbreaks.a4c7b6ac10e0420b1788c9767946d1fc.

41.

Theory and data for simulating fine-scale human movement in an urban environment.

Perkins TA, Garcia AJ, Paz-Soldán VA, Stoddard ST, Reiner RC Jr, Vazquez-Prokopec G, Bisanzio D, Morrison AC, Halsey ES, Kochel TJ, Smith DL, Kitron U, Scott TW, Tatem AJ.

J R Soc Interface. 2014 Oct 6;11(99). pii: 20140642. doi: 10.1098/rsif.2014.0642.

42.

Solitary Candida albicans Infection Causing Fournier Gangrene and Review of Fungal Etiologies.

Perkins TA, Bieniek JM, Sumfest JM.

Rev Urol. 2014;16(2):95-8. Review.

43.

A global assembly of adult female mosquito mark-release-recapture data to inform the control of mosquito-borne pathogens.

Guerra CA, Reiner RC Jr, Perkins TA, Lindsay SW, Midega JT, Brady OJ, Barker CM, Reisen WK, Harrington LC, Takken W, Kitron U, Lloyd AL, Hay SI, Scott TW, Smith DL.

Parasit Vectors. 2014 Jun 19;7:276. doi: 10.1186/1756-3305-7-276.

44.

Evolutionary dynamics of West Nile virus in Georgia, 2001-2011.

Phillips JE, Stallknecht DE, Perkins TA, McClure NS, Mead DG.

Virus Genes. 2014 Aug;49(1):132-6. doi: 10.1007/s11262-014-1061-0. Epub 2014 Apr 2.

PMID:
24691819
45.

Recasting the theory of mosquito-borne pathogen transmission dynamics and control.

Smith DL, Perkins TA, Reiner RC Jr, Barker CM, Niu T, Chaves LF, Ellis AM, George DB, Le Menach A, Pulliam JR, Bisanzio D, Buckee C, Chiyaka C, Cummings DA, Garcia AJ, Gatton ML, Gething PW, Hartley DM, Johnston G, Klein EY, Michael E, Lloyd AL, Pigott DM, Reisen WK, Ruktanonchai N, Singh BK, Stoller J, Tatem AJ, Kitron U, Godfray HC, Cohen JM, Hay SI, Scott TW.

Trans R Soc Trop Med Hyg. 2014 Apr;108(4):185-97. doi: 10.1093/trstmh/tru026. Epub 2014 Mar 3.

46.

Determinants of heterogeneous blood feeding patterns by Aedes aegypti in Iquitos, Peru.

Liebman KA, Stoddard ST, Reiner RC Jr, Perkins TA, Astete H, Sihuincha M, Halsey ES, Kochel TJ, Morrison AC, Scott TW.

PLoS Negl Trop Dis. 2014 Feb 13;8(2):e2702. doi: 10.1371/journal.pntd.0002702. eCollection 2014 Feb.

47.

Heterogeneity, mixing, and the spatial scales of mosquito-borne pathogen transmission.

Perkins TA, Scott TW, Le Menach A, Smith DL.

PLoS Comput Biol. 2013;9(12):e1003327. doi: 10.1371/journal.pcbi.1003327. Epub 2013 Dec 12.

48.

Mosquito population regulation and larval source management in heterogeneous environments.

Smith DL, Perkins TA, Tusting LS, Scott TW, Lindsay SW.

PLoS One. 2013 Aug 7;8(8):e71247. doi: 10.1371/journal.pone.0071247. eCollection 2013.

49.

Evolution of dispersal and life history interact to drive accelerating spread of an invasive species.

Perkins TA, Phillips BL, Baskett ML, Hastings A.

Ecol Lett. 2013 Aug;16(8):1079-87. doi: 10.1111/ele.12136. Epub 2013 Jul 1.

50.

A systematic review of mathematical models of mosquito-borne pathogen transmission: 1970-2010.

Reiner RC Jr, Perkins TA, Barker CM, Niu T, Chaves LF, Ellis AM, George DB, Le Menach A, Pulliam JR, Bisanzio D, Buckee C, Chiyaka C, Cummings DA, Garcia AJ, Gatton ML, Gething PW, Hartley DM, Johnston G, Klein EY, Michael E, Lindsay SW, Lloyd AL, Pigott DM, Reisen WK, Ruktanonchai N, Singh BK, Tatem AJ, Kitron U, Hay SI, Scott TW, Smith DL.

J R Soc Interface. 2013 Feb 13;10(81):20120921. doi: 10.1098/rsif.2012.0921. Print 2013 Apr 6. Review.

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