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Items: 1 to 50 of 114

1.

The olfactory G protein-coupled receptor (Olfr-78/OR51E2) modulates the intestinal response to colitis.

Kotlo K, Anbazhagan AN, Priyamvada S, Jayawardena D, Kumar A, Chen Y, Xia Y, Finn PW, Perkins DL, Dudeja PK, Layden B.

Am J Physiol Cell Physiol. 2020 Jan 8. doi: 10.1152/ajpcell.00454.2019. [Epub ahead of print]

PMID:
31913697
2.

Declining Pulmonary Function in Interstitial Lung Disease Linked to Lymphocyte Dysfunction.

Schott CA, Ascoli C, Huang Y, Perkins DL, Finn PW; ACCESS Research Group.

Am J Respir Crit Care Med. 2019 Oct 29. doi: 10.1164/rccm.201910-1909LE. [Epub ahead of print] No abstract available.

PMID:
31661301
3.

In Situ Methane Determination in Petroleum at High Temperatures and High Pressures with Multivariate Optical Computing.

Jones CM, Price J, Dai B, Li J, Perkins DL, Myrick ML.

Anal Chem. 2019 Dec 17;91(24):15617-15624. doi: 10.1021/acs.analchem.9b03715. Epub 2019 Nov 8.

PMID:
31660727
4.

Prenatal Maternal Depression and Neonatal Immune Responses.

Hahn J, Gold DR, Coull BA, McCormick MC, Finn PW, Perkins DL, Rich-Edwards JW, Rifas Shiman SL, Oken E, Kubzansky LD.

Psychosom Med. 2019 May;81(4):320-327. doi: 10.1097/PSY.0000000000000686.

PMID:
31048634
5.

Serotonin Transporter Deficiency is Associated with Dysbiosis and Changes in Metabolic Function of the Mouse Intestinal Microbiome.

Singhal M, Turturice BA, Manzella CR, Ranjan R, Metwally AA, Theorell J, Huang Y, Alrefai WA, Dudeja PK, Finn PW, Perkins DL, Gill RK.

Sci Rep. 2019 Feb 14;9(1):2138. doi: 10.1038/s41598-019-38489-8.

6.

Utilizing longitudinal microbiome taxonomic profiles to predict food allergy via Long Short-Term Memory networks.

Metwally AA, Yu PS, Reiman D, Dai Y, Finn PW, Perkins DL.

PLoS Comput Biol. 2019 Feb 4;15(2):e1006693. doi: 10.1371/journal.pcbi.1006693. eCollection 2019 Feb.

7.

Multiomic Strategies Reveal Diversity and Important Functional Aspects of Human Gut Microbiome.

Ranjan R, Rani A, Finn PW, Perkins DL.

Biomed Res Int. 2018 Nov 14;2018:6074918. doi: 10.1155/2018/6074918. eCollection 2018.

8.

In vitro antioxidant activities of Rhodobacter sphaeroides and protective effect on Caco-2 cell line model.

An J, Yang C, Li Z, Finn PW, Perkins DL, Sun J, Bai Z, Gao L, Zhang M, Ren D.

Appl Microbiol Biotechnol. 2019 Jan;103(2):917-927. doi: 10.1007/s00253-018-9497-0. Epub 2018 Nov 12.

PMID:
30421110
9.

An optimized protocol to quantify signaling in human transitional B cells by phospho flow cytometry.

Zwang NA, Ganesh BB, Cardenas KT, Chong AS, Finn PW, Perkins DL.

J Immunol Methods. 2018 Dec;463:112-121. doi: 10.1016/j.jim.2018.10.002. Epub 2018 Oct 13.

PMID:
30321549
10.

Lower perinatal exposure to Proteobacteria is an independent predictor of early childhood wheezing.

Turturice BA, Gold DR, Litonjua AA, Oken E, Rifas-Shiman S, Perkins DL, Finn PW.

J Allergy Clin Immunol. 2019 Jan;143(1):419-421.e5. doi: 10.1016/j.jaci.2018.06.051. Epub 2018 Sep 8. No abstract available.

11.

Bronchiolitis obliterans syndrome susceptibility and the pulmonary microbiome.

Schott C, Weigt SS, Turturice BA, Metwally A, Belperio J, Finn PW, Perkins DL.

J Heart Lung Transplant. 2018 Sep;37(9):1131-1140. doi: 10.1016/j.healun.2018.04.007. Epub 2018 Apr 26.

12.

Imaging systems and algorithms to analyze biological samples in real-time using mobile phone microscopy.

Shanmugam A, Usmani M, Mayberry A, Perkins DL, Holcomb DE.

PLoS One. 2018 Mar 6;13(3):e0193797. doi: 10.1371/journal.pone.0193797. eCollection 2018.

13.

MetaLonDA: a flexible R package for identifying time intervals of differentially abundant features in metagenomic longitudinal studies.

Metwally AA, Yang J, Ascoli C, Dai Y, Finn PW, Perkins DL.

Microbiome. 2018 Feb 13;6(1):32. doi: 10.1186/s40168-018-0402-y.

14.

Donor and Recipient Ethnicity Impacts Renal Graft Adverse Outcomes.

Kwan JM, Hajjiri Z, Chen YF, Metwally A, Perkins DL, Finn PW.

J Racial Ethn Health Disparities. 2018 Oct;5(5):1003-1013. doi: 10.1007/s40615-017-0447-9. Epub 2017 Dec 21.

PMID:
29270842
15.

Atopic asthmatic immune phenotypes associated with airway microbiota and airway obstruction.

Turturice BA, McGee HS, Oliver B, Baraket M, Nguyen BT, Ascoli C, Ranjan R, Rani A, Perkins DL, Finn PW.

PLoS One. 2017 Oct 20;12(10):e0184566. doi: 10.1371/journal.pone.0184566. eCollection 2017.

16.

A Circulating Micro-RNA Signature Serves as a Diagnostic and Prognostic Indicator in Sarcoidosis.

Ascoli C, Huang Y, Schott C, Turturice BA, Metwally A, Perkins DL, Finn PW; ACCESS Research Group .

Am J Respir Cell Mol Biol. 2017 Aug 16. doi: 10.1165/rcmb.2017-0207OC. [Epub ahead of print]

17.

The Potential for Emerging Microbiome-Mediated Therapeutics in Asthma.

Ozturk AB, Turturice BA, Perkins DL, Finn PW.

Curr Allergy Asthma Rep. 2017 Aug 10;17(9):62. doi: 10.1007/s11882-017-0730-1. Review.

PMID:
28812256
18.

A small-volume PVTX system for broadband spectroscopic calibration of downhole optical sensors.

Jones CM, Pelletier MT, Atkinson R, Shen J, Moore J, Anders J, Perkins DL, Myrick ML.

Rev Sci Instrum. 2017 Jul;88(7):073101. doi: 10.1063/1.4985545.

PMID:
28764514
19.

Perinatal Bacterial Exposure Contributes to IL-13 Aeroallergen Response.

Turturice BA, Ranjan R, Nguyen B, Hughes LM, Andropolis KE, Gold DR, Litonjua AA, Oken E, Perkins DL, Finn PW.

Am J Respir Cell Mol Biol. 2017 Oct;57(4):419-427. doi: 10.1165/rcmb.2017-0027OC.

20.

Complete Genome Sequence of BK Polyomavirus Subtype Ib-1 Detected in a Kidney Transplant Patient with BK Viremia Using Shotgun Sequencing.

Ranjan R, Rani A, Brennan DC, Finn PW, Perkins DL.

Genome Announc. 2017 Feb 9;5(6). pii: e01474-16. doi: 10.1128/genomeA.01474-16.

21.

Effect of the Obesity Epidemic on Kidney Transplantation: Obesity Is Independent of Diabetes as a Risk Factor for Adverse Renal Transplant Outcomes.

Kwan JM, Hajjiri Z, Metwally A, Finn PW, Perkins DL.

PLoS One. 2016 Nov 16;11(11):e0165712. doi: 10.1371/journal.pone.0165712. eCollection 2016.

22.

WEVOTE: Weighted Voting Taxonomic Identification Method of Microbial Sequences.

Metwally AA, Dai Y, Finn PW, Perkins DL.

PLoS One. 2016 Sep 28;11(9):e0163527. doi: 10.1371/journal.pone.0163527. eCollection 2016.

23.

Urinary microbiome of kidney transplant patients reveals dysbiosis with potential for antibiotic resistance.

Rani A, Ranjan R, McGee HS, Andropolis KE, Panchal DV, Hajjiri Z, Brennan DC, Finn PW, Perkins DL.

Transl Res. 2017 Mar;181:59-70. doi: 10.1016/j.trsl.2016.08.008. Epub 2016 Sep 9.

24.

A diverse virome in kidney transplant patients contains multiple viral subtypes with distinct polymorphisms.

Rani A, Ranjan R, McGee HS, Metwally A, Hajjiri Z, Brennan DC, Finn PW, Perkins DL.

Sci Rep. 2016 Sep 16;6:33327. doi: 10.1038/srep33327.

25.

Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing.

Ranjan R, Rani A, Metwally A, McGee HS, Perkins DL.

Biochem Biophys Res Commun. 2016 Jan 22;469(4):967-77. doi: 10.1016/j.bbrc.2015.12.083. Epub 2015 Dec 22.

26.

Precision Subtypes of T Cell-Mediated Rejection Identified by Molecular Profiles.

Kadota PO, Hajjiri Z, Finn PW, Perkins DL.

Front Immunol. 2015 Nov 6;6:536. doi: 10.3389/fimmu.2015.00536. eCollection 2015.

27.

Transplantation: molecular phenotyping of T-cell-mediated rejection.

Chong AS, Perkins DL.

Nat Rev Nephrol. 2014 Dec;10(12):678-80. doi: 10.1038/nrneph.2014.197. Epub 2014 Oct 28. Review.

28.

CD45 ligation expands Tregs by promoting interactions with DCs.

Camirand G, Wang Y, Lu Y, Wan YY, Lin Y, Deng S, Guz G, Perkins DL, Finn PW, Farber DL, Flavell RA, Shlomchik WD, Lakkis FG, Rudd CE, Rothstein DM.

J Clin Invest. 2014 Oct;124(10):4603-13. doi: 10.1172/JCI74087. Epub 2014 Sep 9.

29.

T cells and lung injury. Impact of rapamycin.

Nakajima T, Lin KW, Li J, McGee HS, Kwan JM, Perkins DL, Finn PW.

Am J Respir Cell Mol Biol. 2014 Aug;51(2):294-9. doi: 10.1165/rcmb.2013-0171OC.

30.

Regulation of cytotoxic T lymphocyte antigen 4 by cyclic AMP.

Li J, Lin KW, Murray F, Nakajima T, Zhao Y, Perkins DL, Finn PW.

Am J Respir Cell Mol Biol. 2013 Jan;48(1):63-70. doi: 10.1165/rcmb.2012-0155OC. Epub 2012 Sep 28.

31.

Fenfluramine-induced gene dysregulation in human pulmonary artery smooth muscle and endothelial cells.

Yao W, Mu W, Zeifman A, Lofti M, Remillard CV, Makino A, Perkins DL, Garcia JG, Yuan JX, Zhang W.

Pulm Circ. 2011 Jul-Sep;1(3):405-18. doi: 10.4103/2045-8932.87310.

32.

Lung transplantation: infection, inflammation, and the microbiome.

Nakajima T, Palchevsky V, Perkins DL, Belperio JA, Finn PW.

Semin Immunopathol. 2011 Mar;33(2):135-56. doi: 10.1007/s00281-011-0249-9. Epub 2011 Jan 27. Review.

PMID:
21271250
33.

The endogenous pro-resolving mediators lipoxin A4 and resolvin E1 preserve organ function in allograft rejection.

Levy BD, Zhang QY, Bonnans C, Primo V, Reilly JJ, Perkins DL, Liang Y, Amin Arnaout M, Nikolic B, Serhan CN.

Prostaglandins Leukot Essent Fatty Acids. 2011 Jan-Feb;84(1-2):43-50. doi: 10.1016/j.plefa.2010.09.002. Epub 2010 Sep 24.

34.

Surfactant protein D-mediated decrease of allergen-induced inflammation is dependent upon CTLA4.

Lin KW, Jen KY, Suarez CJ, Crouch EC, Perkins DL, Finn PW.

J Immunol. 2010 Jun 1;184(11):6343-9. doi: 10.4049/jimmunol.0901947. Epub 2010 Apr 30.

35.

T cell pathways involving CTLA4 contribute to a model of acute lung injury.

Nakajima T, Suarez CJ, Lin KW, Jen KY, Schnitzer JE, Makani SS, Parker N, Perkins DL, Finn PW.

J Immunol. 2010 May 15;184(10):5835-41. doi: 10.4049/jimmunol.0903238. Epub 2010 Apr 12.

36.

Sampling and quantitative analysis of clean B. subtilis spores at sub-monolayer coverage by reflectance fourier transform infrared microscopy using gold-coated filter substrates.

Brooke H, Perkins DL, Setlow B, Setlow P, Bronk BV, Myrick ML.

Appl Spectrosc. 2008 Aug;62(8):881-8. doi: 10.1366/000370208785284358.

PMID:
18702861
37.

Costimulation and allergic responses: immune and bioinformatic analyses.

Jain VV, Perkins DL, Finn PW.

Pharmacol Ther. 2008 Mar;117(3):385-92. doi: 10.1016/j.pharmthera.2007.12.002. Epub 2007 Dec 23. Review.

PMID:
18280573
38.

(R)-albuterol decreases immune responses: role of activated T cells.

Ferrada MA, Gordon EL, Jen KY, He HZ, Lu X, Barone LM, Amirifeli S, Perkins DL, Finn PW.

Respir Res. 2008 Jan 14;9:3. doi: 10.1186/1465-9921-9-3.

39.

Graft produced interleukin-6 functions as a danger signal and promotes rejection after transplantation.

Liang Y, Christopher K, Finn PW, Colson YL, Perkins DL.

Transplantation. 2007 Sep 27;84(6):771-7. Erratum in: Transplantation. 2007 Nov 27;84(10):1375.

PMID:
17893611
40.

CD45RB ligation inhibits allergic pulmonary inflammation by inducing CTLA4 transcription.

Jen KY, Campo M, He H, Makani SS, Velasco G, Rothstein DM, Perkins DL, Finn PW.

J Immunol. 2007 Sep 15;179(6):4212-8.

41.

Microarray analysis of gene expression in murine cardiac graft infiltrating cells.

Liang Y, Lu X, Perkins DL.

Methods Mol Biol. 2007;366:3-12.

PMID:
17568116
43.

Hubs in biological interaction networks exhibit low changes in expression in experimental asthma.

Lu X, Jain VV, Finn PW, Perkins DL.

Mol Syst Biol. 2007;3:98. Epub 2007 Apr 17.

44.

Anti-CD25 mAb administration prevents spontaneous liver transplant tolerance.

Li W, Carper K, Liang Y, Zheng XX, Kuhr CS, Reyes JD, Perkins DL, Thomson AW, Perkins JD.

Transplant Proc. 2006 Dec;38(10):3207-8.

PMID:
17175224
45.

The role of Foxp3+ regulatory T cells in liver transplant tolerance.

Li W, Carper K, Zheng XX, Kuhr CS, Reyes JD, Liang Y, Perkins DL, Thomson AW, Perkins JD.

Transplant Proc. 2006 Dec;38(10):3205-6.

PMID:
17175223
46.

Associations of cord blood fatty acids with lymphocyte proliferation, IL-13, and IFN-gamma.

Gold DR, Willwerth BM, Tantisira KG, Finn PW, Schaub B, Perkins DL, Tzianabos A, Ly NP, Schroeter C, Gibbons F, Campos H, Oken E, Gillman MW, Palmer LJ, Ryan LM, Weiss ST.

J Allergy Clin Immunol. 2006 Apr;117(4):931-8. Epub 2006 Feb 14.

47.

Prenatal, perinatal, and heritable influences on cord blood immune responses.

Willwerth BM, Schaub B, Tantisira KG, Gold DR, Palmer LJ, Litonjua AA, Perkins DL, Schroeter C, Gibbons FK, Gillman MW, Weiss ST, Finn PW.

Ann Allergy Asthma Immunol. 2006 Mar;96(3):445-53.

48.

Elastin fragments drive disease progression in a murine model of emphysema.

Houghton AM, Quintero PA, Perkins DL, Kobayashi DK, Kelley DG, Marconcini LA, Mecham RP, Senior RM, Shapiro SD.

J Clin Invest. 2006 Mar;116(3):753-9. Epub 2006 Feb 9.

49.

The combined effects of zafirlukast, prednisone, and inhaled budesonide on IL-13 and IFN-gamma secretion.

Gibbons FK, Israel E, Deykin A, Schaub B, He HZ, Perkins DL, Finn PW.

J Clin Immunol. 2005 Sep;25(5):437-44.

PMID:
16160912
50.

Fetal cord blood: aspects of heightened immune responses.

Schaub B, Tantisira KG, Gibbons FK, He H, Litonjua AA, Gillman MW, Weiss S, Perkins DL, Gold DR, Finn PW.

J Clin Immunol. 2005 Jul;25(4):329-37.

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