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Items: 23

1.

Comprehensive Identification of Fim-Mediated Inversions in Uropathogenic Escherichia coli with Structural Variation Detection Using Relative Entropy.

Russell CW, Sukumaran R, Liow LT, Periaswamy B, Rafee S, Chee YC, Chen SL.

mSphere. 2019 Apr 10;4(2). pii: e00693-18. doi: 10.1128/mSphere.00693-18.

2.

An Outbreak of Streptococcus pyogenes in a Mental Health Facility: Advantage of Well-Timed Whole-Genome Sequencing Over emm Typing.

Bergin SM, Periaswamy B, Barkham T, Chua HC, Mok YM, Fung DSS, Su AHC, Lee YL, Chua MLI, Ng PY, Soon WJW, Chu CW, Tan SL, Meehan M, Ang BSP, Leo YS, Holden MTG, De P, Hsu LY, Chen SL, de Sessions PF, Marimuthu K.

Infect Control Hosp Epidemiol. 2018 Jul;39(7):852-860. doi: 10.1017/ice.2018.101. Epub 2018 May 9.

PMID:
29739475
3.

Addressing Drug Resistance in Cancer with Macromolecular Chemotherapeutic Agents.

Park NH, Cheng W, Lai F, Yang C, Florez de Sessions P, Periaswamy B, Wenhan Chu C, Bianco S, Liu S, Venkataraman S, Chen Q, Yang YY, Hedrick JL.

J Am Chem Soc. 2018 Mar 28;140(12):4244-4252. doi: 10.1021/jacs.7b11468. Epub 2018 Mar 15.

PMID:
29504396
4.

A macromolecular approach to eradicate multidrug resistant bacterial infections while mitigating drug resistance onset.

Chin W, Zhong G, Pu Q, Yang C, Lou W, De Sessions PF, Periaswamy B, Lee A, Liang ZC, Ding X, Gao S, Chu CW, Bianco S, Bao C, Tong YW, Fan W, Wu M, Hedrick JL, Yang YY.

Nat Commun. 2018 Mar 2;9(1):917. doi: 10.1038/s41467-018-03325-6.

5.

Draft Genome Sequence of Singapore Klebsiella pneumoniae subsp. pneumoniae Isolate DS32358_14, Which Contains the Carbapenemase Gene blaVIM-1.

Koh TH, Abdul Rahman NB, Teo JWP, La MV, Periaswamy B, Chen SL.

Genome Announc. 2018 Jan 4;6(1). pii: e01377-17. doi: 10.1128/genomeA.01377-17.

6.

Putative Integrative Mobile Elements That Exploit the Xer Recombination Machinery Carrying blaIMI-Type Carbapenemase Genes in Enterobacter cloacae Complex Isolates in Singapore.

Koh TH, Rahman NBA, Teo JWP, La MV, Periaswamy B, Chen SL.

Antimicrob Agents Chemother. 2017 Dec 21;62(1). pii: e01542-17. doi: 10.1128/AAC.01542-17. Print 2018 Jan.

7.

The epidemiology and transmission of methicillin-resistant Staphylococcus aureus in the community in Singapore: study protocol for a longitudinal household study.

Shankar N, Chow ALP, Oon J, Hsu LY, Ang B, Pang J, De Sessions PF, Periaswamy B, Tambyah PA, Teo DB, Tam CC.

BMC Infect Dis. 2017 Oct 11;17(1):678. doi: 10.1186/s12879-017-2793-y.

8.

Point mutations in the major outer membrane protein drive hypervirulence of a rapidly expanding clone of Campylobacter jejuni.

Wu Z, Periaswamy B, Sahin O, Yaeger M, Plummer P, Zhai W, Shen Z, Dai L, Chen SL, Zhang Q.

Proc Natl Acad Sci U S A. 2016 Sep 20;113(38):10690-5. doi: 10.1073/pnas.1605869113. Epub 2016 Sep 6.

9.

Correction: Granulocytes Impose a Tight Bottleneck upon the Gut Luminal Pathogen Population during Salmonella Typhimurium Colitis.

Maier L, Diard M, Sellin ME, Chouffane ES, Trautwein-Weidner K, Periaswamy B, Slack E, Dolowschiak T, Stecher B, Loverdo C, Regoes RR, Hardt WD.

PLoS Pathog. 2015 Jul 17;11(7):e1005047. doi: 10.1371/journal.ppat.1005047. eCollection 2015 Jul. No abstract available.

10.

Granulocytes impose a tight bottleneck upon the gut luminal pathogen population during Salmonella typhimurium colitis.

Maier L, Diard M, Sellin ME, Chouffane ES, Trautwein-Weidner K, Periaswamy B, Slack E, Dolowschiak T, Stecher B, Loverdo C, Regoes RR, Hardt WD.

PLoS Pathog. 2014 Dec 18;10(12):e1004557. doi: 10.1371/journal.ppat.1004557. eCollection 2014 Dec. Erratum in: PLoS Pathog. 2015 Jul;11(7):e1005047.

11.

Microbiota-derived hydrogen fuels Salmonella typhimurium invasion of the gut ecosystem.

Maier L, Vyas R, Cordova CD, Lindsay H, Schmidt TS, Brugiroux S, Periaswamy B, Bauer R, Sturm A, Schreiber F, von Mering C, Robinson MD, Stecher B, Hardt WD.

Cell Host Microbe. 2013 Dec 11;14(6):641-51. doi: 10.1016/j.chom.2013.11.002.

12.

Deletion of invH gene in Salmonella enterica serovar Typhimurium limits the secretion of Sip effector proteins.

Pati NB, Vishwakarma V, Jaiswal S, Periaswamy B, Hardt WD, Suar M.

Microbes Infect. 2013 Jan;15(1):66-73. doi: 10.1016/j.micinf.2012.10.014. Epub 2012 Nov 13.

PMID:
23159244
13.

Live attenuated S. Typhimurium vaccine with improved safety in immuno-compromised mice.

Periaswamy B, Maier L, Vishwakarma V, Slack E, Kremer M, Andrews-Polymenis HL, McClelland M, Grant AJ, Suar M, Hardt WD.

PLoS One. 2012;7(9):e45433. doi: 10.1371/journal.pone.0045433. Epub 2012 Sep 24.

14.

A novel phage element of Salmonella enterica serovar Enteritidis P125109 contributes to accelerated type III secretion system 2-dependent early inflammation kinetics in a mouse colitis model.

Vishwakarma V, Periaswamy B, Bhusan Pati N, Slack E, Hardt WD, Suar M.

Infect Immun. 2012 Sep;80(9):3236-46. doi: 10.1128/IAI.00180-12. Epub 2012 Jul 2.

15.

Identification of Novel Phosphorylation Motifs Through an Integrative Computational and Experimental Analysis of the Human Phosphoproteome.

Amanchy R, Kandasamy K, Mathivanan S, Periaswamy B, Reddy R, Yoon WH, Joore J, Beer MA, Cope L, Pandey A.

J Proteomics Bioinform. 2011;4(2):22-35.

16.

Salmonella enterica serovar Typhimurium binds to HeLa cells via Fim-mediated reversible adhesion and irreversible type three secretion system 1-mediated docking.

Misselwitz B, Kreibich SK, Rout S, Stecher B, Periaswamy B, Hardt WD.

Infect Immun. 2011 Jan;79(1):330-41. doi: 10.1128/IAI.00581-10. Epub 2010 Oct 25.

17.

Enhanced CellClassifier: a multi-class classification tool for microscopy images.

Misselwitz B, Strittmatter G, Periaswamy B, Schlumberger MC, Rout S, Horvath P, Kozak K, Hardt WD.

BMC Bioinformatics. 2010 Jan 14;11:30. doi: 10.1186/1471-2105-11-30.

18.

Accelerated type III secretion system 2-dependent enteropathogenesis by a Salmonella enterica serovar enteritidis PT4/6 strain.

Suar M, Periaswamy B, Songhet P, Misselwitz B, Müller A, Käppeli R, Kremer M, Heikenwalder M, Hardt WD.

Infect Immun. 2009 Sep;77(9):3569-77. doi: 10.1128/IAI.00511-09. Epub 2009 Jun 15.

19.

Human Proteinpedia enables sharing of human protein data.

Mathivanan S, Ahmed M, Ahn NG, Alexandre H, Amanchy R, Andrews PC, Bader JS, Balgley BM, Bantscheff M, Bennett KL, Björling E, Blagoev B, Bose R, Brahmachari SK, Burlingame AS, Bustelo XR, Cagney G, Cantin GT, Cardasis HL, Celis JE, Chaerkady R, Chu F, Cole PA, Costello CE, Cotter RJ, Crockett D, DeLany JP, De Marzo AM, DeSouza LV, Deutsch EW, Dransfield E, Drewes G, Droit A, Dunn MJ, Elenitoba-Johnson K, Ewing RM, Van Eyk J, Faca V, Falkner J, Fang X, Fenselau C, Figeys D, Gagné P, Gelfi C, Gevaert K, Gimble JM, Gnad F, Goel R, Gromov P, Hanash SM, Hancock WS, Harsha HC, Hart G, Hays F, He F, Hebbar P, Helsens K, Hermeking H, Hide W, Hjernø K, Hochstrasser DF, Hofmann O, Horn DM, Hruban RH, Ibarrola N, James P, Jensen ON, Jensen PH, Jung P, Kandasamy K, Kheterpal I, Kikuno RF, Korf U, Körner R, Kuster B, Kwon MS, Lee HJ, Lee YJ, Lefevre M, Lehvaslaiho M, Lescuyer P, Levander F, Lim MS, Löbke C, Loo JA, Mann M, Martens L, Martinez-Heredia J, McComb M, McRedmond J, Mehrle A, Menon R, Miller CA, Mischak H, Mohan SS, Mohmood R, Molina H, Moran MF, Morgan JD, Moritz R, Morzel M, Muddiman DC, Nalli A, Navarro JD, Neubert TA, Ohara O, Oliva R, Omenn GS, Oyama M, Paik YK, Pennington K, Pepperkok R, Periaswamy B, Petricoin EF, Poirier GG, Prasad TS, Purvine SO, Rahiman BA, Ramachandran P, Ramachandra YL, Rice RH, Rick J, Ronnholm RH, Salonen J, Sanchez JC, Sayd T, Seshi B, Shankari K, Sheng SJ, Shetty V, Shivakumar K, Simpson RJ, Sirdeshmukh R, Siu KW, Smith JC, Smith RD, States DJ, Sugano S, Sullivan M, Superti-Furga G, Takatalo M, Thongboonkerd V, Trinidad JC, Uhlen M, Vandekerckhove J, Vasilescu J, Veenstra TD, Vidal-Taboada JM, Vihinen M, Wait R, Wang X, Wiemann S, Wu B, Xu T, Yates JR, Zhong J, Zhou M, Zhu Y, Zurbig P, Pandey A.

Nat Biotechnol. 2008 Feb;26(2):164-7. doi: 10.1038/nbt0208-164. No abstract available.

20.

A curated compendium of phosphorylation motifs.

Amanchy R, Periaswamy B, Mathivanan S, Reddy R, Tattikota SG, Pandey A.

Nat Biotechnol. 2007 Mar;25(3):285-6. No abstract available.

PMID:
17344875
21.

An evaluation of human protein-protein interaction data in the public domain.

Mathivanan S, Periaswamy B, Gandhi TK, Kandasamy K, Suresh S, Mohmood R, Ramachandra YL, Pandey A.

BMC Bioinformatics. 2006 Dec 18;7 Suppl 5:S19.

22.

Phosphoproteomic analysis of Her2/neu signaling and inhibition.

Bose R, Molina H, Patterson AS, Bitok JK, Periaswamy B, Bader JS, Pandey A, Cole PA.

Proc Natl Acad Sci U S A. 2006 Jun 27;103(26):9773-8. Epub 2006 Jun 19.

23.

Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets.

Gandhi TK, Zhong J, Mathivanan S, Karthick L, Chandrika KN, Mohan SS, Sharma S, Pinkert S, Nagaraju S, Periaswamy B, Mishra G, Nandakumar K, Shen B, Deshpande N, Nayak R, Sarker M, Boeke JD, Parmigiani G, Schultz J, Bader JS, Pandey A.

Nat Genet. 2006 Mar;38(3):285-93.

PMID:
16501559

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