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Items: 13

1.

The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation.

Rendón-Anaya M, Ibarra-Laclette E, Méndez-Bravo A, Lan T, Zheng C, Carretero-Paulet L, Perez-Torres CA, Chacón-López A, Hernandez-Guzmán G, Chang TH, Farr KM, Barbazuk WB, Chamala S, Mutwil M, Shivhare D, Alvarez-Ponce D, Mitter N, Hayward A, Fletcher S, Rozas J, Sánchez Gracia A, Kuhn D, Barrientos-Priego AF, Salojärvi J, Librado P, Sankoff D, Herrera-Estrella A, Albert VA, Herrera-Estrella L.

Proc Natl Acad Sci U S A. 2019 Aug 20;116(34):17081-17089. doi: 10.1073/pnas.1822129116. Epub 2019 Aug 6.

2.

Genomic Signals of Adaptation towards Mutualism and Sociality in Two Ambrosia Beetle Complexes.

Blaz J, Barrera-Redondo J, Vázquez-Rosas-Landa M, Canedo-Téxon A, Aguirre von Wobeser E, Carrillo D, Stouthamer R, Eskalen A, Villafán E, Alonso-Sánchez A, Lamelas A, Ibarra-Juarez LA, Pérez-Torres CA, Ibarra-Laclette E.

Life (Basel). 2018 Dec 22;9(1). pii: E2. doi: 10.3390/life9010002.

3.

Environmental pH modulates transcriptomic responses in the fungus Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus.

Sánchez-Rangel D, Hernández-Domínguez EE, Pérez-Torres CA, Ortiz-Castro R, Villafán E, Rodríguez-Haas B, Alonso-Sánchez A, López-Buenfil A, Carrillo-Ortiz N, Hernández-Ramos L, Ibarra-Laclette E.

BMC Genomics. 2018 Oct 1;19(1):721. doi: 10.1186/s12864-018-5083-1.

4.

Draft Genome Sequence of the Phytopathogenic Fungus Fusarium euwallaceae, the Causal Agent of Fusarium Dieback.

Ibarra-Laclette E, Sánchez-Rangel D, Hernández-Domínguez E, Pérez-Torres CA, Ortiz-Castro R, Villafán E, Alonso-Sánchez A, Rodríguez-Haas B, López-Buenfil A, García-Avila C, Ramírez-Pool JA.

Genome Announc. 2017 Aug 31;5(35). pii: e00881-17. doi: 10.1128/genomeA.00881-17.

5.

De novo sequencing and analysis of Lophophora williamsii transcriptome, and searching for putative genes involved in mescaline biosynthesis.

Ibarra-Laclette E, Zamudio-Hernández F, Pérez-Torres CA, Albert VA, Ramírez-Chávez E, Molina-Torres J, Fernández-Cortes A, Calderón-Vázquez C, Olivares-Romero JL, Herrera-Estrella A, Herrera-Estrella L.

BMC Genomics. 2015 Sep 2;16:657. doi: 10.1186/s12864-015-1821-9.

6.

Deep sequencing of the Mexican avocado transcriptome, an ancient angiosperm with a high content of fatty acids.

Ibarra-Laclette E, Méndez-Bravo A, Pérez-Torres CA, Albert VA, Mockaitis K, Kilaru A, López-Gómez R, Cervantes-Luevano JI, Herrera-Estrella L.

BMC Genomics. 2015 Aug 13;16:599. doi: 10.1186/s12864-015-1775-y.

7.

An improved, low-cost, hydroponic system for growing Arabidopsis and other plant species under aseptic conditions.

Alatorre-Cobos F, Calderón-Vázquez C, Ibarra-Laclette E, Yong-Villalobos L, Pérez-Torres CA, Oropeza-Aburto A, Méndez-Bravo A, González-Morales SI, Gutiérrez-Alanís D, Chacón-López A, Peña-Ocaña BA, Herrera-Estrella L.

BMC Plant Biol. 2014 Mar 21;14:69. doi: 10.1186/1471-2229-14-69.

8.

Architecture and evolution of a minute plant genome.

Ibarra-Laclette E, Lyons E, Hernández-Guzmán G, Pérez-Torres CA, Carretero-Paulet L, Chang TH, Lan T, Welch AJ, Juárez MJ, Simpson J, Fernández-Cortés A, Arteaga-Vázquez M, Góngora-Castillo E, Acevedo-Hernández G, Schuster SC, Himmelbauer H, Minoche AE, Xu S, Lynch M, Oropeza-Aburto A, Cervantes-Pérez SA, de Jesús Ortega-Estrada M, Cervantes-Luevano JI, Michael TP, Mockler T, Bryant D, Herrera-Estrella A, Albert VA, Herrera-Estrella L.

Nature. 2013 Jun 6;498(7452):94-8. doi: 10.1038/nature12132. Epub 2013 May 12.

9.

Translational regulation of Arabidopsis XIPOTL1 is modulated by phosphocholine levels via the phylogenetically conserved upstream open reading frame 30.

Alatorre-Cobos F, Cruz-Ramírez A, Hayden CA, Pérez-Torres CA, Chauvin AL, Ibarra-Laclette E, Alva-Cortés E, Jorgensen RA, Herrera-Estrella L.

J Exp Bot. 2012 Sep;63(14):5203-21. doi: 10.1093/jxb/ers180. Epub 2012 Jul 12.

PMID:
22791820
10.

Functional analysis of the Arabidopsis PLDZ2 promoter reveals an evolutionarily conserved low-Pi-responsive transcriptional enhancer element.

Oropeza-Aburto A, Cruz-Ramírez A, Acevedo-Hernández GJ, Pérez-Torres CA, Caballero-Pérez J, Herrera-Estrella L.

J Exp Bot. 2012 Mar;63(5):2189-202. doi: 10.1093/jxb/err446. Epub 2011 Dec 30.

11.

Transcriptomics and molecular evolutionary rate analysis of the bladderwort (Utricularia), a carnivorous plant with a minimal genome.

Ibarra-Laclette E, Albert VA, Pérez-Torres CA, Zamudio-Hernández F, Ortega-Estrada Mde J, Herrera-Estrella A, Herrera-Estrella L.

BMC Plant Biol. 2011 Jun 3;11:101. doi: 10.1186/1471-2229-11-101.

12.

Low phosphate signaling induces changes in cell cycle gene expression by increasing auxin sensitivity in the Arabidopsis root system.

Pérez Torres CA, López Bucio J, Herrera Estrella L.

Plant Signal Behav. 2009 Aug;4(8):781-3. doi: 10.1105/tpc.108.058719. Epub 2009 Aug 8.

13.

Phosphate availability alters lateral root development in Arabidopsis by modulating auxin sensitivity via a mechanism involving the TIR1 auxin receptor.

Pérez-Torres CA, López-Bucio J, Cruz-Ramírez A, Ibarra-Laclette E, Dharmasiri S, Estelle M, Herrera-Estrella L.

Plant Cell. 2008 Dec;20(12):3258-72. doi: 10.1105/tpc.108.058719. Epub 2008 Dec 23.

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