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Best matches for Peretó J[au]:

Standards not that standard. Vilanova C et al. J Biol Eng. (2015)

Erasing Borders: A Brief Chronicle of Early Synthetic Biology. Peretó J et al. J Mol Evol. (2016)

Creating life and the media: translations and echoes. Porcar M et al. Life Sci Soc Policy. (2018)

Search results

Items: 1 to 50 of 55

1.

Gene connectivity and enzyme evolution in the human metabolic network.

Dobon B, Montanucci L, Peretó J, Bertranpetit J, Laayouni H.

Biol Direct. 2019 Sep 3;14(1):17. doi: 10.1186/s13062-019-0248-7.

2.

Hidden Concepts in the History and Philosophy of Origins-of-Life Studies: a Workshop Report.

Mariscal C, Barahona A, Aubert-Kato N, Aydinoglu AU, Bartlett S, Cárdenas ML, Chandru K, Cleland C, Cocanougher BT, Comfort N, Cornish-Bowden A, Deacon T, Froese T, Giovannelli D, Hernlund J, Hut P, Kimura J, Maurel MC, Merino N, Moreno A, Nakagawa M, Peretó J, Virgo N, Witkowski O, James Cleaves H 2nd.

Orig Life Evol Biosph. 2019 Aug 9. doi: 10.1007/s11084-019-09580-x. [Epub ahead of print] Review.

PMID:
31399826
3.

Bioprospecting the Solar Panel Microbiome: High-Throughput Screening for Antioxidant Bacteria in a Caenorhabditis elegans Model.

Tanner K, Martorell P, Genovés S, Ramón D, Zacarías L, Rodrigo MJ, Peretó J, Porcar M.

Front Microbiol. 2019 May 7;10:986. doi: 10.3389/fmicb.2019.00986. eCollection 2019.

4.

Methanogenesis on Early Stages of Life: Ancient but Not Primordial.

Muñoz-Velasco I, García-Ferris C, Hernandez-Morales R, Lazcano A, Peretó J, Becerra A.

Orig Life Evol Biosph. 2018 Dec;48(4):407-420. doi: 10.1007/s11084-018-9570-9. Epub 2019 Jan 5.

PMID:
30612264
5.

Influence of pathway topology and functional class on the molecular evolution of human metabolic genes.

Montanucci L, Laayouni H, Dobon B, Keys KL, Bertranpetit J, Peretó J.

PLoS One. 2018 Dec 14;13(12):e0208782. doi: 10.1371/journal.pone.0208782. eCollection 2018.

6.

Creating life and the media: translations and echoes.

Porcar M, Peretó J.

Life Sci Soc Policy. 2018 Aug 20;14(1):19. doi: 10.1186/s40504-018-0087-9. Review.

7.

Determinism and Contingency Shape Metabolic Complementation in an Endosymbiotic Consortium.

Ponce-de-Leon M, Tamarit D, Calle-Espinosa J, Mori M, Latorre A, Montero F, Pereto J.

Front Microbiol. 2017 Nov 22;8:2290. doi: 10.3389/fmicb.2017.02290. eCollection 2017.

8.

Polar solar panels: Arctic and Antarctic microbiomes display similar taxonomic profiles.

Tanner K, Martí JM, Belliure J, Fernández-Méndez M, Molina-Menor E, Peretó J, Porcar M.

Environ Microbiol Rep. 2018 Feb;10(1):75-79. doi: 10.1111/1758-2229.12608. Epub 2017 Dec 14.

PMID:
29194980
9.

From grass to gas: microbiome dynamics of grass biomass acidification under mesophilic and thermophilic temperatures.

Abendroth C, Simeonov C, Peretó J, Antúnez O, Gavidia R, Luschnig O, Porcar M.

Biotechnol Biofuels. 2017 Jul 3;10:171. doi: 10.1186/s13068-017-0859-0. eCollection 2017.

10.

On the origin of mitosing cells: A historical appraisal of Lynn Margulis endosymbiotic theory.

Lazcano A, Peretó J.

J Theor Biol. 2017 Dec 7;434:80-87. doi: 10.1016/j.jtbi.2017.06.036. Epub 2017 Jul 3.

PMID:
28684295
11.

Erasing Borders: A Brief Chronicle of Early Synthetic Biology.

Peretó J.

J Mol Evol. 2016 Dec;83(5-6):176-183. Epub 2016 Nov 30. Review.

PMID:
27900404
12.

Metabolic Complementation in Bacterial Communities: Necessary Conditions and Optimality.

Mori M, Ponce-de-León M, Peretó J, Montero F.

Front Microbiol. 2016 Oct 7;7:1553. eCollection 2016.

13.

Nature lessons: The whitefly bacterial endosymbiont is a minimal amino acid factory with unusual energetics.

Calle-Espinosa J, Ponce-de-Leon M, Santos-Garcia D, Silva FJ, Montero F, Peretó J.

J Theor Biol. 2016 Oct 21;407:303-317. doi: 10.1016/j.jtbi.2016.07.024. Epub 2016 Jul 26.

PMID:
27473768
14.

A highly diverse, desert-like microbial biocenosis on solar panels in a Mediterranean city.

Dorado-Morales P, Vilanova C, Peretó J, Codoñer FM, Ramón D, Porcar M.

Sci Rep. 2016 Jul 5;6:29235. doi: 10.1038/srep29235.

15.

A Strategy for Origins of Life Research.

Scharf C, Virgo N, Cleaves HJ 2nd, Aono M, Aubert-Kato N, Aydinoglu A, Barahona A, Barge LM, Benner SA, Biehl M, Brasser R, Butch CJ, Chandru K, Cronin L, Danielache S, Fischer J, Hernlund J, Hut P, Ikegami T, Kimura J, Kobayashi K, Mariscal C, McGlynn S, Menard B, Packard N, Pascal R, Pereto J, Rajamani S, Sinapayen L, Smith E, Switzer C, Takai K, Tian F, Ueno Y, Voytek M, Witkowski O, Yabuta H.

Astrobiology. 2015 Dec;15(12):1031-42. doi: 10.1089/ast.2015.1113.

16.

Consistency Analysis of Genome-Scale Models of Bacterial Metabolism: A Metamodel Approach.

Ponce-de-Leon M, Calle-Espinosa J, Peretó J, Montero F.

PLoS One. 2015 Dec 2;10(12):e0143626. doi: 10.1371/journal.pone.0143626. eCollection 2015.

17.

Nature versus design: synthetic biology or how to build a biological non-machine.

Porcar M, Peretó J.

Integr Biol (Camb). 2016 Apr 18;8(4):451-5. doi: 10.1039/c5ib00239g. Epub 2015 Nov 30. Review.

PMID:
26616724
18.

Standards not that standard.

Vilanova C, Tanner K, Dorado-Morales P, Villaescusa P, Chugani D, Frías A, Segredo E, Molero X, Fritschi M, Morales L, Ramón D, Peña C, Peretó J, Porcar M.

J Biol Eng. 2015 Oct 1;9:17. doi: 10.1186/s13036-015-0017-9. eCollection 2015.

19.

The cockroach Blattella germanica obtains nitrogen from uric acid through a metabolic pathway shared with its bacterial endosymbiont.

Patiño-Navarrete R, Piulachs MD, Belles X, Moya A, Latorre A, Peretó J.

Biol Lett. 2014 Jul;10(7). pii: 20140407. doi: 10.1098/rsbl.2014.0407.

20.

Engineering bacteria to form a biofilm and induce clumping in Caenorhabditis elegans.

Dorado-Morales P, Iglesias A, Zafrilla G, Valero A, Torres A, Miravet-Verde S, de Loma J, Mañas M, Ruiz A, Corman A, Morales LJ, Peretó J, Vilanova C, Porcar M.

ACS Synth Biol. 2014 Dec 19;3(12):941-3. doi: 10.1021/sb4001883. Epub 2014 Feb 4.

PMID:
24933529
21.

A phylogenetic approach to the early evolution of autotrophy: the case of the reverse TCA and the reductive acetyl-CoA pathways.

Becerra A, Rivas M, García-Ferris C, Lazcano A, Peretó J.

Int Microbiol. 2014 Jun;17(2):91-7. doi: 10.2436/20.1501.01.211.

22.

Biochemistry and evolutionary biology: two disciplines that need each other?

Cornish-Bowden A, Pereto J, Cardenas ML.

J Biosci. 2014 Mar;39(1):13-27.

23.

Are we doing synthetic biology?

Porcar M, Peretó J.

Syst Synth Biol. 2012 Dec;6(3-4):79-83. doi: 10.1007/s11693-012-9101-3. Epub 2012 Dec 5.

24.

Solving gap metabolites and blocked reactions in genome-scale models: application to the metabolic network of Blattabacterium cuenoti.

Ponce-de-León M, Montero F, Peretó J.

BMC Syst Biol. 2013 Oct 31;7:114. doi: 10.1186/1752-0509-7-114.

25.

Comparative genomics of Blattabacterium cuenoti: the frozen legacy of an ancient endosymbiont genome.

Patiño-Navarrete R, Moya A, Latorre A, Peretó J.

Genome Biol Evol. 2013;5(2):351-61. doi: 10.1093/gbe/evt011.

26.

Out of fuzzy chemistry: from prebiotic chemistry to metabolic networks.

Peretó J.

Chem Soc Rev. 2012 Aug 21;41(16):5394-403. doi: 10.1039/c2cs35054h. Epub 2012 Apr 16. Review.

PMID:
22508108
27.

Metabolic stasis in an ancient symbiosis: genome-scale metabolic networks from two Blattabacterium cuenoti strains, primary endosymbionts of cockroaches.

González-Domenech CM, Belda E, Patiño-Navarrete R, Moya A, Peretó J, Latorre A.

BMC Microbiol. 2012 Jan 18;12 Suppl 1:S5. doi: 10.1186/1471-2180-12-S1-S5.

28.

Metabolic networks of Sodalis glossinidius: a systems biology approach to reductive evolution.

Belda E, Silva FJ, Peretó J, Moya A.

PLoS One. 2012;7(1):e30652. doi: 10.1371/journal.pone.0030652. Epub 2012 Jan 24.

29.

Serratia symbiotica from the aphid Cinara cedri: a missing link from facultative to obligate insect endosymbiont.

Lamelas A, Gosalbes MJ, Manzano-Marín A, Peretó J, Moya A, Latorre A.

PLoS Genet. 2011 Nov;7(11):e1002357. doi: 10.1371/journal.pgen.1002357. Epub 2011 Nov 10.

30.

Genome economization in the endosymbiont of the wood roach Cryptocercus punctulatus due to drastic loss of amino acid synthesis capabilities.

Neef A, Latorre A, Peretó J, Silva FJ, Pignatelli M, Moya A.

Genome Biol Evol. 2011;3:1437-48. doi: 10.1093/gbe/evr118. Epub 2011 Nov 16.

31.

Microbial diversity in the midguts of field and lab-reared populations of the European corn borer Ostrinia nubilalis.

Belda E, Pedrola L, Peretó J, Martínez-Blanch JF, Montagud A, Navarro E, Urchueguía J, Ramón D, Moya A, Porcar M.

PLoS One. 2011;6(6):e21751. doi: 10.1371/journal.pone.0021751. Epub 2011 Jun 30.

32.

Phylogenomic evidence for the presence of a flagellum and cbb(3) oxidase in the free-living mitochondrial ancestor.

Sassera D, Lo N, Epis S, D'Auria G, Montagna M, Comandatore F, Horner D, Peretó J, Luciano AM, Franciosi F, Ferri E, Crotti E, Bazzocchi C, Daffonchio D, Sacchi L, Moya A, Latorre A, Bandi C.

Mol Biol Evol. 2011 Dec;28(12):3285-96. doi: 10.1093/molbev/msr159. Epub 2011 Jun 20.

PMID:
21690562
33.

Metalloproteins and the pyrite-based origin of life: a critical assessment.

Rivas M, Becerra A, Peretó J, Bada JL, Lazcano A.

Orig Life Evol Biosph. 2011 Aug;41(4):347-56. doi: 10.1007/s11084-011-9238-1. Epub 2011 Mar 24.

PMID:
21431891
34.

Blueprint for a minimal photoautotrophic cell: conserved and variable genes in Synechococcus elongatus PCC 7942.

Delaye L, González-Domenech CM, Garcillán-Barcia MP, Peretó J, de la Cruz F, Moya A.

BMC Genomics. 2011 Jan 12;12:25. doi: 10.1186/1471-2164-12-25.

35.

Defining life or bringing biology to life.

Ruiz-Mirazo K, Peretó J, Moreno A.

Orig Life Evol Biosph. 2010 Apr;40(2):203-13. doi: 10.1007/s11084-010-9201-6. Epub 2010 Feb 25.

PMID:
20182798
36.

Evolutionary convergence and nitrogen metabolism in Blattabacterium strain Bge, primary endosymbiont of the cockroach Blattella germanica.

López-Sánchez MJ, Neef A, Peretó J, Patiño-Navarrete R, Pignatelli M, Latorre A, Moya A.

PLoS Genet. 2009 Nov;5(11):e1000721. doi: 10.1371/journal.pgen.1000721. Epub 2009 Nov 13.

37.

Yeast cultures with UCP1 uncoupling activity as a heating device.

Delás J, Notari M, Forés J, Pechuan J, Porcar M, Navarro E, Montagud A, Baguena M, Peretó J, de Córdoba PF, González-Barroso MM, Rial E, Moya A, Urchueguía J.

N Biotechnol. 2009 Dec 31;26(6):300-6. doi: 10.1016/j.nbt.2009.09.005. Epub 2009 Sep 15.

PMID:
19761877
38.

The evolutionary history of lysine biosynthesis pathways within eukaryotes.

Torruella G, Suga H, Riutort M, Peretó J, Ruiz-Trillo I.

J Mol Evol. 2009 Sep;69(3):240-8. doi: 10.1007/s00239-009-9266-x. Epub 2009 Aug 11.

PMID:
19669682
39.

Goethe's dream. Challenges and opportunities for synthetic biology.

Moya A, Krasnogor N, Peretó J, Latorre A.

EMBO Rep. 2009 Aug;10 Suppl 1:S28-32. doi: 10.1038/embor.2009.120. No abstract available.

40.

Charles Darwin and the origin of life.

Peretó J, Bada JL, Lazcano A.

Orig Life Evol Biosph. 2009 Oct;39(5):395-406. doi: 10.1007/s11084-009-9172-7. Epub 2009 Jul 25.

41.

Toward minimal bacterial cells: evolution vs. design.

Moya A, Gil R, Latorre A, Peretó J, Pilar Garcillán-Barcia M, de la Cruz F.

FEMS Microbiol Rev. 2009 Jan;33(1):225-35. doi: 10.1111/j.1574-6976.2008.00151.x. Epub 2008 Dec 3. Review.

42.

Evolutionary theory: it's on the school syllabus in Mexico.

Lazcano A, Becerra A, Peretó J.

Nature. 2008 Jun 5;453(7196):719. doi: 10.1038/453719a. No abstract available.

PMID:
18528373
43.

Learning how to live together: genomic insights into prokaryote-animal symbioses.

Moya A, Peretó J, Gil R, Latorre A.

Nat Rev Genet. 2008 Mar;9(3):218-29. doi: 10.1038/nrg2319. Review.

PMID:
18268509
44.

The frontier between cell and organelle: genome analysis of Candidatus Carsonella ruddii.

Tamames J, Gil R, Latorre A, Peretó J, Silva FJ, Moya A.

BMC Evol Biol. 2007 Oct 1;7:181.

45.

Structural analyses of a hypothetical minimal metabolism.

Gabaldón T, Peretó J, Montero F, Gil R, Latorre A, Moya A.

Philos Trans R Soc Lond B Biol Sci. 2007 Oct 29;362(1486):1751-62.

46.

Energetically plausible model of a self-maintaining protocellular system.

Olasagasti F, Moreno A, Peretó J, Morán F.

Bull Math Biol. 2007 May;69(4):1423-45. Epub 2007 Jan 18.

PMID:
17235709
47.

Phylogenetic analysis of eukaryotic thiolases suggests multiple proteobacterial origins.

Peretó J, López-García P, Moreira D.

J Mol Evol. 2005 Jul;61(1):65-74. Epub 2005 Jun 16.

PMID:
15980957
48.

Controversies on the origin of life.

Peretó J.

Int Microbiol. 2005 Mar;8(1):23-31. Review.

49.

Determination of the core of a minimal bacterial gene set.

Gil R, Silva FJ, Peretó J, Moya A.

Microbiol Mol Biol Rev. 2004 Sep;68(3):518-37, table of contents. Review.

50.

Ancestral lipid biosynthesis and early membrane evolution.

Peretó J, López-García P, Moreira D.

Trends Biochem Sci. 2004 Sep;29(9):469-77.

PMID:
15337120

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