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Re-sequencing and optical mapping reveals misassemblies and real inversions on Corynebacterium pseudotuberculosis genomes.

Sousa TJ, Parise D, Profeta R, Parise MTD, Gomide ACP, Kato RB, Pereira FL, Figueiredo HCP, Ramos R, Brenig B, Costa da Silva ALD, Ghosh P, Barh D, Góes-Neto A, Azevedo V.

Sci Rep. 2019 Nov 8;9(1):16387. doi: 10.1038/s41598-019-52695-4.


Effects of temperature changes in the transcriptional profile of the emerging fish pathogen Francisella noatunensis subsp. orientalis.

Pereira FL, Tavares GC, de Carvalho AF, Rosa JCC, Rezende CP, Leal CAG, Figueiredo HCP.

Microb Pathog. 2019 Aug;133:103548. doi: 10.1016/j.micpath.2019.103548. Epub 2019 May 18.


Quantitative Proteomic Analysis of the Response of Probiotic Putative Lactococcus lactis NCDO 2118 Strain to Different Oxygen Availability Under Temperature Variation.

Marques Da Silva W, Oliveira LC, Soares SC, Sousa CS, Tavares GC, Resende CP, Pereira FL, Ghosh P, Figueiredo H, Azevedo V.

Front Microbiol. 2019 Apr 11;10:759. doi: 10.3389/fmicb.2019.00759. eCollection 2019.


Streptococcus agalactiae Sequence Type 283 in Farmed Fish, Brazil.

Leal CAG, Queiroz GA, Pereira FL, Tavares GC, Figueiredo HCP.

Emerg Infect Dis. 2019 Apr;25(4):776-779. doi: 10.3201/eid2504.180543.


[Delayed trigeminocardiac reflex after maxillofacial surgery: case report].

Guedes AA, Pereira FL, Machado EG, Salgado Filho MF, Chaves LFM, Araújo FP.

Rev Bras Anestesiol. 2019 May - Jun;69(3):315-318. doi: 10.1016/j.bjan.2018.11.003. Epub 2019 Jan 18. Portuguese.


Delineation of the pan-proteome of fish-pathogenic Streptococcus agalactiae strains using a label-free shotgun approach.

Tavares GC, Pereira FL, Barony GM, Rezende CP, da Silva WM, de Souza GHMF, Verano-Braga T, de Carvalho Azevedo VA, Leal CAG, Figueiredo HCP.

BMC Genomics. 2019 Jan 7;20(1):11. doi: 10.1186/s12864-018-5423-1.


Transcriptome and Proteome of Fish-Pathogenic Streptococcus agalactiae Are Modulated by Temperature.

Tavares GC, Carvalho AF, Pereira FL, Rezende CP, Azevedo VAC, Leal CAG, Figueiredo HCP.

Front Microbiol. 2018 Nov 2;9:2639. doi: 10.3389/fmicb.2018.02639. eCollection 2018.


Complete genome sequencing of sixteen Francisella noatunensis subsp. orientalis isolates: A genomic approach for molecular characterization and spread dynamics of this clonal population.

Pereira FL, Gonçalves LA, Tavares GC, Soares SC, Dorella FA, de Carvalho AF, Leibowitz MP, Leal CAG, Azevedo VAC, Figueiredo HCP.

Genomics. 2018 Nov;110(6):442-449. doi: 10.1016/j.ygeno.2018.10.011. Epub 2018 Oct 24.


Comparative proteomic analysis of four biotechnological strains Lactococcus lactis through label-free quantitative proteomics.

Silva WM, Sousa CS, Oliveira LC, Soares SC, Souza GFMH, Tavares GC, Resende CP, Folador EL, Pereira FL, Figueiredo H, Azevedo V.

Microb Biotechnol. 2019 Mar;12(2):265-274. doi: 10.1111/1751-7915.13305. Epub 2018 Oct 19.


First genome sequencing and comparative analyses of Corynebacterium pseudotuberculosis strains from Mexico.

Parise D, Parise MTD, Viana MVC, Muñoz-Bucio AV, Cortés-Pérez YA, Arellano-Reynoso B, Díaz-Aparicio E, Dorella FA, Pereira FL, Carvalho AF, Figueiredo HCP, Ghosh P, Barh D, Gomide ACP, Azevedo VAC.

Stand Genomic Sci. 2018 Oct 10;13:21. doi: 10.1186/s40793-018-0325-z. eCollection 2018.


Gut microbiome modulation during treatment of mucositis with the dairy bacterium Lactococcus lactis and recombinant strain secreting human antimicrobial PAP.

Carvalho R, Vaz A, Pereira FL, Dorella F, Aguiar E, Chatel JM, Bermudez L, Langella P, Fernandes G, Figueiredo H, Goes-Neto A, Azevedo V.

Sci Rep. 2018 Oct 10;8(1):15072. doi: 10.1038/s41598-018-33469-w.


Mutation of the Surface Layer Protein SlpB Has Pleiotropic Effects in the Probiotic Propionibacterium freudenreichii CIRM-BIA 129.

do Carmo FLR, Silva WM, Tavares GC, Ibraim IC, Cordeiro BF, Oliveira ER, Rabah H, Cauty C, da Silva SH, Canário Viana MV, Caetano ACB, Dos Santos RG, de Oliveira Carvalho RD, Jardin J, Pereira FL, Folador EL, Le Loir Y, Figueiredo HCP, Jan G, Azevedo V.

Front Microbiol. 2018 Aug 17;9:1807. doi: 10.3389/fmicb.2018.01807. eCollection 2018.


Transcriptome analysis of Corynebacterium pseudotuberculosis biovar Equi in two conditions of the environmental stress.

Gomide ACP, Ibraim IC, Alves JTC, de Sá PG, de Oliveira Silva YR, Santana MP, Silva WM, Folador EL, Mariano DCB, de Paula Castro TL, Barbosa S, Dorella FA, Carvalho AF, Pereira FL, Leal CAG, Figueiredo HCP, Azevedo V, Silva A, Folador ARC.

Gene. 2018 Nov 30;677:349-360. doi: 10.1016/j.gene.2018.08.028. Epub 2018 Aug 8.


Surgical Treatment of Posttraumatic Laterognathia: A Case Report and a Literature Review, Focused on the Effects of a Condylar Fracture on the Face.

Pereira FL, Pinheiro LMA, Araújo PM, Chihara LL, Maia Nogueira RL, Sant'Ana E.

Craniomaxillofac Trauma Reconstr. 2018 Sep;11(3):211-218. doi: 10.1055/s-0037-1601861. Epub 2017 May 18.


Label-free proteome of water buffalo (Bubalus bubalis) seminal plasma.

Brito MF, Auler PA, Tavares GC, Rezende CP, Almeida GMF, Pereira FL, Leal CAG, Moura AA, Figueiredo HCP, Henry M.

Reprod Domest Anim. 2018 Oct;53(5):1243-1246. doi: 10.1111/rda.13206. Epub 2018 Jun 11.


Large-scale genomic analyses reveal the population structure and evolutionary trends of Streptococcus agalactiae strains in Brazilian fish farms.

Barony GM, Tavares GC, Pereira FL, Carvalho AF, Dorella FA, Leal CAG, Figueiredo HCP.

Sci Rep. 2017 Oct 19;7(1):13538. doi: 10.1038/s41598-017-13228-z.


Use of MALDI-TOF Mass Spectrometry for the Fast Identification of Gram-Positive Fish Pathogens.

Assis GBN, Pereira FL, Zegarra AU, Tavares GC, Leal CA, Figueiredo HCP.

Front Microbiol. 2017 Aug 9;8:1492. doi: 10.3389/fmicb.2017.01492. eCollection 2017.


Comparative genomic analysis between Corynebacterium pseudotuberculosis strains isolated from buffalo.

Viana MVC, Figueiredo H, Ramos R, Guimarães LC, Pereira FL, Dorella FA, Selim SAK, Salaheldean M, Silva A, Wattam AR, Azevedo V.

PLoS One. 2017 Apr 26;12(4):e0176347. doi: 10.1371/journal.pone.0176347. eCollection 2017.


SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology.

Mariano DC, Pereira FL, Aguiar EL, Oliveira LC, Benevides L, Guimarães LC, Folador EL, Sousa TJ, Ghosh P, Barh D, Figueiredo HC, Silva A, Ramos RT, Azevedo VA.

BMC Bioinformatics. 2016 Dec 15;17(Suppl 18):456. doi: 10.1186/s12859-016-1344-7.


Complete Genome Sequence of the Attenuated Corynebacterium pseudotuberculosis Strain T1.

Almeida S, Loureiro D, Portela RW, Mariano DC, Sousa TJ, Pereira FL, Dorella FA, Carvalho AF, Moura-Costa LF, Leal CA, Figueiredo HC, Meyer R, Azevedo V.

Genome Announc. 2016 Sep 8;4(5). pii: e00947-16. doi: 10.1128/genomeA.00947-16.


Whole-Genome Sequence of Corynebacterium auriscanis Strain CIP 106629 Isolated from a Dog with Bilateral Otitis from the United Kingdom.

Tiwari S, Jamal SB, Oliveira LC, Clermont D, Bizet C, Mariano D, de Carvalho PV, Souza F, Pereira FL, de Castro Soares S, Guimarães LC, Dorella F, Carvalho A, Leal C, Barh D, Figueiredo H, Hassan SS, Azevedo V, Silva A.

Genome Announc. 2016 Aug 11;4(4). pii: e00683-16. doi: 10.1128/genomeA.00683-16.


Complete genome sequence of Streptococcus agalactiae strain GBS85147 serotype of type Ia isolated from human oropharynx.

de Aguiar EL, Mariano DC, Viana MV, Benevides Lde J, de Souza Rocha F, de Castro Oliveira L, Pereira FL, Dorella FA, Leal CA, de Carvalho AF, Santos GS, Mattos-Guaraldi AL, Nagao PE, de Castro Soares S, Hassan SS, Pinto AC, Figueiredo HC, Azevedo V.

Stand Genomic Sci. 2016 Jun 3;11:39. doi: 10.1186/s40793-016-0158-6. eCollection 2016.


Natural coinfection by Streptococcus agalactiae and Francisella noatunensis subsp. orientalis in farmed Nile tilapia (Oreochromis niloticus L.).

Assis GB, Tavares GC, Pereira FL, Figueiredo HC, Leal CA.

J Fish Dis. 2017 Jan;40(1):51-63. doi: 10.1111/jfd.12493. Epub 2016 May 4.


Whole-genome optical mapping reveals a mis-assembly between two rRNA operons of Corynebacterium pseudotuberculosis strain 1002.

Mariano DC, Sousa Tde J, Pereira FL, Aburjaile F, Barh D, Rocha F, Pinto AC, Hassan SS, Saraiva TD, Dorella FA, de Carvalho AF, Leal CA, Figueiredo HC, Silva A, Ramos RT, Azevedo VA.

BMC Genomics. 2016 Apr 30;17:315. doi: 10.1186/s12864-016-2673-7.


Fat Grafting to the Breast, a Simple Procedure for a Very Complex Reconstruction.

Claro F Jr, Pereira FL, Pinto-Neto AM.

Plast Reconstr Surg Glob Open. 2016 Feb 5;4(1):e594. doi: 10.1097/GOX.0000000000000580. eCollection 2016 Jan.


Complete genome sequences of Francisella noatunensis subsp. orientalis strains FNO12, FNO24 and FNO190: a fish pathogen with genomic clonal behavior.

Gonçalves LA, de Castro Soares S, Pereira FL, Dorella FA, de Carvalho AF, de Freitas Almeida GM, Leal CA, Azevedo V, Figueiredo HC.

Stand Genomic Sci. 2016 Apr 12;11:30. doi: 10.1186/s40793-016-0151-0. eCollection 2016.


The genome anatomy of Corynebacterium pseudotuberculosis VD57 a highly virulent strain causing Caseous lymphadenitis.

Almeida S, Tiwari S, Mariano D, Souza F, Jamal SB, Coimbra N, Raittz RT, Dorella FA, Carvalho AF, Pereira FL, Soares Sde C, Leal CA, Barh D, Ghosh P, Figueiredo H, Moura-Costa LF, Portela RW, Meyer R, Silva A, Azevedo V.

Stand Genomic Sci. 2016 Apr 8;11:29. doi: 10.1186/s40793-016-0149-7. eCollection 2016.


Evaluating the efficacy of the new Ion PGM Hi-Q Sequencing Kit applied to bacterial genomes.

Pereira FL, Soares SC, Dorella FA, Leal CA, Figueiredo HC.

Genomics. 2016 May;107(5):189-98. doi: 10.1016/j.ygeno.2016.03.004. Epub 2016 Mar 24.


Complete genome sequence of Peptoclostridium difficile strain Z31.

Pereira FL, Oliveira Júnior CA, Silva ROS, Dorella FA, Carvalho AF, Almeida GMF, Leal CAG, Lobato FCF, Figueiredo HCP.

Gut Pathog. 2016 Apr 1;8:11. doi: 10.1186/s13099-016-0095-3. eCollection 2016.


Draft Genome Sequences of Two Pathogenic Corynebacterial Species Isolated from Cows.

Guimarães LC, Lopes T, Ramos RT, Carneiro AR, Cavalcante AL, Barreto D, de Sá PC, Veras AA, Rocha FS, Bagano P, Pereira FL, Dorella FA, Leal CA, Carvalho AF, Bizet C, Guiso N, Badell E, Figueiredo HC, Azevedo V, Silva A.

J Genomics. 2016 Mar 2;4:7-9. doi: 10.7150/jgen.14456. eCollection 2016.


Complete Genome Sequence of Corynebacterium pseudotuberculosis Viscerotropic Strain N1.

Loureiro D, Portela RW, Sousa TJ, Rocha F, Pereira FL, Dorella FA, Carvalho AF, Menezes N, Macedo ES, Moura-Costa LF, Meyer R, Leal CA, Figueiredo HC, Azevedo V.

Genome Announc. 2016 Jan 28;4(1). pii: e01673-15. doi: 10.1128/genomeA.01673-15.


Whole-Genome Sequence of Francisella noatunensis subsp. orientalis Strain FNO01 Isolated from Diseased Nile Tilapia in Brazil.

Figueiredo HC, Leal CA, Pereira FL, Soares SC, Gonçalves LA, Dorella FA, Carvalho AF, Azevedo VA.

Genome Announc. 2016 Jan 21;4(1). pii: e01603-15. doi: 10.1128/genomeA.01603-15.


Draft Genome Sequences of Two Salmonella enterica Serotype Infantis Strains Isolated from a Captive Western Lowland Gorilla (Gorilla gorilla gorilla) and a Cohabitant Black and White Tegu (Tupinambis merianae) in Brazil.

Paixão TA, Coura FM, Malta MC, Tinoco HP, Pessanha AT, Pereira FL, Leal CA, Heinemann MB, Figueiredo HC, Santos RL.

Genome Announc. 2016 Jan 21;4(1). pii: e01590-15. doi: 10.1128/genomeA.01590-15.


Comparative genome analysis of Weissella ceti, an emerging pathogen of farm-raised rainbow trout.

Figueiredo HC, Soares SC, Pereira FL, Dorella FA, Carvalho AF, Teixeira JP, Azevedo VA, Leal CA.

BMC Genomics. 2015 Dec 22;16:1095. doi: 10.1186/s12864-015-2324-4.


Draft Genome Sequences of Two Species of "Difficult-to-Identify" Human-Pathogenic Corynebacteria: Implications for Better Identification Tests.

Pacheco LG, Mattos-Guaraldi AL, Santos CS, Veras AA, Guimarães LC, Abreu V, Pereira FL, Soares SC, Dorella FA, Carvalho AF, Leal CG, Figueiredo HC, Ramos JN, Vieira VV, Farfour E, Guiso N, Hirata R Jr, Azevedo V, Silva A, Ramos RT.

J Genomics. 2015 Aug 1;3:82-4. doi: 10.7150/jgen.12886. eCollection 2015.


Antihyperlipidemic and antihyperglycemic effects of the Brazilian salsaparrilhas Smilax brasiliensis Spreng. (Smilacaceae) and Herreria salsaparrilha Mart. (Agavaceae) in mice treated with a high-refined-carbohydrate containing diet.

Pereira FL, Oliveira VB, Viana CTR, Campos PP, Silva MAN, Brandão MGL.

Food Res Int. 2015 Oct;76(Pt 3):366-372. doi: 10.1016/j.foodres.2015.07.034. Epub 2015 Aug 1.


Effects of inferior splenic lobe pole fixation and gastrosplenic peritoneal membrane section on the vitality of the remanent of subtotal splenectomy in rats.

Mendonça FA, Carmo FP, Paris LG, Pagotte MD, Pereira FL, Vidigal PV, Paulo DN, Nunes TA.

Acta Cir Bras. 2015 Jul;30(7):461-9. doi: 10.1590/S0102-865020150070000003.


MapRepeat: an approach for effective assembly of repetitive regions in prokaryotic genomes.

Mariano DC, Pereira FL, Ghosh P, Barh D, Figueiredo HC, Silva A, Ramos RT, Azevedo VA.

Bioinformation. 2015 Jun 30;11(6):276-9. doi: 10.6026/97320630011276. eCollection 2015.


Genome Sequence of Corynebacterium ulcerans Strain FRC11.

Benevides Lde J, Viana MV, Mariano DC, Rocha Fde S, Bagano PC, Folador EL, Pereira FL, Dorella FA, Leal CA, Carvalho AF, Soares Sde C, Carneiro A, Ramos R, Badell-Ocando E, Guiso N, Silva A, Figueiredo H, Azevedo V, Guimarães LC.

Genome Announc. 2015 Mar 12;3(2). pii: e00112-15. doi: 10.1128/genomeA.00112-15.


Genome Sequence of Corynebacterium ulcerans Strain 210932.

Viana MV, de Jesus Benevides L, Batista Mariano DC, de Souza Rocha F, Bagano Vilas Boas PC, Folador EL, Pereira FL, Alves Dorella F, Gomes Leal CA, Fiorini de Carvalho A, Silva A, de Castro Soares S, Pereira Figueiredo HC, Azevedo V, Guimarães LC.

Genome Announc. 2014 Nov 26;2(6). pii: e01233-14. doi: 10.1128/genomeA.01233-14.


Complete Genome Sequences of Fish Pathogenic Weissella ceti Strains WS74 and WS105.

Figueiredo HC, Leal CA, Dorella FA, Carvalho AF, Soares SC, Pereira FL, Azevedo VA.

Genome Announc. 2014 Oct 16;2(5). pii: e01014-14. doi: 10.1128/genomeA.01014-14.


Genome Sequence of Lactococcus lactis subsp. lactis NCDO 2118, a GABA-Producing Strain.

Oliveira LC, Saraiva TD, Soares SC, Ramos RT, Sá PH, Carneiro AR, Miranda F, Freire M, Renan W, Júnior AF, Santos AR, Pinto AC, Souza BM, Castro CP, Diniz CA, Rocha CS, Mariano DC, de Aguiar EL, Folador EL, Barbosa EG, Aburjaile FF, Gonçalves LA, Guimarães LC, Azevedo M, Agresti PC, Silva RF, Tiwari S, Almeida SS, Hassan SS, Pereira VB, Abreu VA, Pereira UP, Dorella FA, Carvalho AF, Pereira FL, Leal CA, Figueiredo HC, Silva A, Miyoshi A, Azevedo V.

Genome Announc. 2014 Oct 2;2(5). pii: e00980-14. doi: 10.1128/genomeA.00980-14.


Whole-Genome Sequence of Weissella ceti Strain WS08, Isolated from Diseased Rainbow Trout in Brazil.

Figueiredo HC, Leal G, Pereira FL, Soares SC, Dorella FA, Carvalho AF, Pereira UP, Azevedo VA.

Genome Announc. 2014 Aug 21;2(4). pii: e00851-14. doi: 10.1128/genomeA.00851-14.


[Handling of preterm infants in a neonatal intensive care unit].

Pereira FL, Nogueira de Góes Fdos S, Fonseca LM, Scochi CG, Castral TC, Leite AM.

Rev Esc Enferm USP. 2013 Dec;47(6):1272-8. doi: 10.1590/S0080-623420130000600003. Portuguese.


Modulation of mucosal/systemic antibody response after sublingual immunotherapy in mite-allergic children.

Queirós MG, Silva DA, Siman IL, Ynoue LH, Araújo NS, Pereira FL, Almeida KC, Miranda JS, Pena JD, Cunha-Junior JP, Taketomi EA.

Pediatr Allergy Immunol. 2013 Dec;24(8):752-61. doi: 10.1111/pai.12163. Epub 2013 Dec 2.


Percutaneous versus surgical closure of atrial septal defects in children and adolescents.

Costa RN, Ribeiro MS, Pereira FL, Pedra SR, Jatene MB, Jatene IB, Ferreiro CR, Santana MV, Fontes VF, Pedra CA.

Arq Bras Cardiol. 2013 Apr;100(4):347-54. English, Portuguese.


Changes in the trade in native medicinal plants in Brazilian public markets.

Brandão Md, Cosenza GP, Pereira FL, Vasconcelos AS, Fagg CW.

Environ Monit Assess. 2013 Aug;185(8):7013-23. doi: 10.1007/s10661-013-3081-y. Epub 2013 Jan 16.


Macrophage-derived Hedgehog ligands promotes fibrogenic and angiogenic responses in human schistosomiasis mansoni.

Pereira TA, Xie G, Choi SS, Syn WK, Voieta I, Lu J, Chan IS, Swiderska M, Amaral KB, Antunes CM, Secor WE, Witek RP, Lambertucci JR, Pereira FL, Diehl AM.

Liver Int. 2013 Jan;33(1):149-61. doi: 10.1111/liv.12016. Epub 2012 Nov 1.


Impact of adhesive and photoactivation method on sealant integrity and polymer network formation.

Borges BC, Pereira FL, Alonso RC, Braz R, Montes MA, Pinheiro IV, Santos AJ.

Braz Oral Res. 2012 May-Jun;26(3):249-55.


Correlation analysis between post-pancreatoduodenectomy pancreatic fistula and pancreatic histology.

Pereira FL, Vasques FT, Moricz Ad, Campos Td, Pacheco AM Jr, Silva RA.

Rev Col Bras Cir. 2012;39(1):41-7. English, Portuguese.

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