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Mitochondria in the biology, pathogenesis, and treatment of hepatitis virus infections.

Qu C, Zhang S, Li Y, Wang Y, Peppelenbosch MP, Pan Q.

Rev Med Virol. 2019 Jul 19:e2075. doi: 10.1002/rmv.2075. [Epub ahead of print] Review.


Targeting Tyrosine Phosphatases by 3-Bromopyruvate Overcomes Hyperactivation of Platelets from Gastrointestinal Cancer Patients.

Faria AVS, Andrade SS, Reijm AN, Spaander MCW, de Maat MPM, Peppelenbosch MP, Ferreira-Halder CV, Fuhler GM.

J Clin Med. 2019 Jun 28;8(7). pii: E936. doi: 10.3390/jcm8070936.


Value of VAV3 Methylation in Stool DNA Might Be Restricted to Non-Thiopurine-Treated Inflammatory Bowel Disease Patients.

Lam SY, Yu J, Peppelenbosch MP.

Clin Gastroenterol Hepatol. 2019 Jun 18. pii: S1542-3565(19)30658-5. doi: 10.1016/j.cgh.2019.06.020. [Epub ahead of print] No abstract available.


Bacterial biofilms as a potential contributor to mucinous colorectal cancer formation.

Li S, Peppelenbosch MP, Smits R.

Biochim Biophys Acta Rev Cancer. 2019 Jun 12;1872(1):74-79. doi: 10.1016/j.bbcan.2019.05.009. [Epub ahead of print] Review.


Modulation of cytokine patterns and microbiome during pregnancy in IBD.

van der Giessen J, Binyamin D, Belogolovski A, Frishman S, Tenenbaum-Gavish K, Hadar E, Louzoun Y, Peppelenbosch MP, van der Woude CJ, Koren O, Fuhler GM.

Gut. 2019 Jun 5. pii: gutjnl-2019-318263. doi: 10.1136/gutjnl-2019-318263. [Epub ahead of print]


HOXA9 mediates and marks premalignant compartment size expansion in colonic adenomas.

Janmaat VT, Liu H, da Silva RA, Wisse PHA, Spaander MCW, Ten Hagen TLM, Smits R, Bruno MJ, Fuhler GM, Peppelenbosch MP.

Carcinogenesis. 2019 Feb 20. pii: bgz038. doi: 10.1093/carcin/bgz038. [Epub ahead of print]


Achalasia and associated esophageal cancer risk: What lessons can we learn from the molecular analysis of Barrett's-associated adenocarcinoma?

Nesteruk K, Spaander MCW, Leeuwenburgh I, Peppelenbosch MP, Fuhler GM.

Biochim Biophys Acta Rev Cancer. 2019 May 4. pii: S0304-419X(19)30028-9. doi: 10.1016/j.bbcan.2019.04.007. [Epub ahead of print] Review.


HOXA cluster gene expression during osteoblast differentiation involves epigenetic control.

da Silva RA, Fuhler GM, Janmaat VT, da C Fernandes CJ, da Silva Feltran G, Oliveira FA, Matos AA, Oliveira RC, Ferreira MR, Zambuzzi WF, Peppelenbosch MP.

Bone. 2019 Aug;125:74-86. doi: 10.1016/j.bone.2019.04.026. Epub 2019 May 1.


Outcome of a screening program for the prevention of neonatal early-onset group B Streptococcus infection: a population-based cohort study in Inner Mongolia, China.

Ji Y, Zhao C, Ma XX, Peppelenbosch MP, Ma Z, Pan Q.

J Med Microbiol. 2019 May;68(5):803-811. doi: 10.1099/jmm.0.000976. Epub 2019 Apr 17.


Smoothened-dependent and -independent pathways in mammalian noncanonical Hedgehog signaling.

Faria AVS, Akyala AI, Parikh K, Brüggemann LW, Spek CA, Cao W, Bruno MJ, Bijlsma MF, Fuhler GM, Peppelenbosch MP.

J Biol Chem. 2019 Jun 21;294(25):9787-9798. doi: 10.1074/jbc.RA119.007956. Epub 2019 Apr 16.


Cannabinoid signal transduction explains disconnect of cannabis effects in experimental and clinical colitis.

Peppelenbosch MP, Parikh K, Fuhler G.

J Crohns Colitis. 2019 Apr 16. pii: jjz078. doi: 10.1093/ecco-jcc/jjz078. [Epub ahead of print] No abstract available.


Suppression of pyrimidine biosynthesis by targeting DHODH enzyme robustly inhibits rotavirus replication.

Chen S, Ding S, Yin Y, Xu L, Li P, Peppelenbosch MP, Pan Q, Wang W.

Antiviral Res. 2019 Jul;167:35-44. doi: 10.1016/j.antiviral.2019.04.005. Epub 2019 Apr 8.


Errors in translational decoding: tRNA wobbling or misincorporation?

Ou X, Cao J, Cheng A, Peppelenbosch MP, Pan Q.

PLoS Genet. 2019 Mar 28;15(3):e1008017. doi: 10.1371/journal.pgen.1008017. eCollection 2019 Mar. Review.


A Direct Effect of Sex Hormones on Epithelial Barrier Function in Inflammatory Bowel Disease Models.

van der Giessen J, van der Woude CJ, Peppelenbosch MP, Fuhler GM.

Cells. 2019 Mar 19;8(3). pii: E261. doi: 10.3390/cells8030261.


Norovirus and rotavirus infections in children less than five years of age hospitalized with acute gastroenteritis in Indonesia.

Nirwati H, Donato CM, Mawarti Y, Mulyani NS, Ikram A, Aman AT, Peppelenbosch MP, Soenarto Y, Pan Q, Hakim MS.

Arch Virol. 2019 Jun;164(6):1515-1525. doi: 10.1007/s00705-019-04215-y. Epub 2019 Mar 18.


Efficacy of Different Endoscopic Stents in the Management of Postoperative Biliary Strictures: A Systematic Review and Meta-analysis.

Yang Q, Liu J, Ma W, Wang J, Li F, Bramer WM, Peppelenbosch MP, Pan Q.

J Clin Gastroenterol. 2019 Jul;53(6):418-426. doi: 10.1097/MCG.0000000000001193.


Suppression of Hepatocellular Carcinoma by Mycophenolic Acid in Experimental Models and in Patients.

Chen K, Sheng J, Ma B, Cao W, Hernanda PY, Liu J, Boor PPC, Tjon ASW, Felczak K, Sprengers D, Pankiewicz KW, Metselaar HJ, Ma Z, Kwekkeboom J, Peppelenbosch MP, Pan Q.

Transplantation. 2019 May;103(5):929-937. doi: 10.1097/TP.0000000000002647.


Direct-acting antiviral agents for liver transplant recipients with recurrent genotype 1 hepatitis C virus infection: Systematic review and meta-analysis.

Liu J, Ma B, Cao W, Li M, Bramer WM, Peppelenbosch MP, Pan Q.

Transpl Infect Dis. 2019 Apr;21(2):e13047. doi: 10.1111/tid.13047. Epub 2019 Jan 21.


Sofosbuvir directly promotes the clonogenic capability of human hepatocellular carcinoma cells.

Liu J, Cao W, Ma B, Li M, Peppelenbosch MP, Pan Q.

Clin Res Hepatol Gastroenterol. 2018 Dec 26. pii: S2210-7401(18)30278-X. doi: 10.1016/j.clinre.2018.11.016. [Epub ahead of print] No abstract available.


Kinase activity is impaired in neutrophils of sepsis patients.

Hoogendijk AJ, van Vught LA, Wiewel MA, Fuhler GM, Belkasim-Bohoudi H, Horn J, Schultz MJ, Scicluna BP, Peppelenbosch MP, van 't Veer C, de Vos AF, van der Poll T.

Haematologica. 2019 Jun;104(6):e233-e235. doi: 10.3324/haematol.2018.201913. Epub 2018 Dec 4. No abstract available.


Dichotomal functions of phosphorylated and unphosphorylated STAT1 in hepatocellular carcinoma.

Ma B, Chen K, Liu P, Li M, Liu J, Sideras K, Sprengers D, Biermann K, Wang W, IJzermans JNM, Cao W, Kwekkeboom J, Peppelenbosch MP, Pan Q.

J Mol Med (Berl). 2019 Jan;97(1):77-88. doi: 10.1007/s00109-018-1717-7. Epub 2018 Nov 19.


Signaling Size: Ankyrin and SOCS Box-Containing ASB E3 Ligases in Action.

Liu P, Verhaar AP, Peppelenbosch MP.

Trends Biochem Sci. 2019 Jan;44(1):64-74. doi: 10.1016/j.tibs.2018.10.003. Epub 2018 Nov 13. Review.


Action and clinical significance of CCAAT/enhancer-binding protein delta in hepatocellular carcinoma.

Liu P, Cao W, Ma B, Li M, Chen K, Sideras K, Duitman JW, Sprengers D, Khe Tran TC, Ijzermans JNM, Biermann K, Verheij J, Spek CA, Kwekkeboom J, Pan Q, Peppelenbosch MP.

Carcinogenesis. 2019 Mar 12;40(1):155-163. doi: 10.1093/carcin/bgy130.


Modeling liver cancer and therapy responsiveness using organoids derived from primary mouse liver tumors.

Cao W, Liu J, Wang L, Li M, Verstegen MMA, Yin Y, Ma B, Chen K, Bolkestein M, Sprengers D, van der Laan LJW, Doukas M, Kwekkeboom J, Smits R, Peppelenbosch MP, Pan Q.

Carcinogenesis. 2019 Mar 12;40(1):145-154. doi: 10.1093/carcin/bgy129.


Recombinant identification, molecular classification and proposed reference genomes for hepatitis delta virus.

Miao Z, Zhang S, Ma Z, Hakim MS, Wang W, Peppelenbosch MP, Pan Q.

J Viral Hepat. 2019 Jan;26(1):183-190. doi: 10.1111/jvh.13010. Epub 2018 Oct 19.


Oncogenic STRAP Supports Hepatocellular Carcinoma Growth by Enhancing Wnt/β-Catenin Signaling.

Wang W, Li S, Liu P, Sideras K, van de Werken HJG, van der Heide M, Cao W, Lavrijsen M, Peppelenbosch MP, Bruno M, Pan Q, Smits R.

Mol Cancer Res. 2019 Feb;17(2):521-531. doi: 10.1158/1541-7786.MCR-18-0054. Epub 2018 Sep 26.


Laminar shear stress-provoked cytoskeletal changes are mediated by epigenetic reprogramming of TIMP1 in human primary smooth muscle cells.

da Silva RA, Fernandes CJDC, Feltran GDS, Gomes AM, de Camargo Andrade AF, Andia DC, Peppelenbosch MP, Zambuzzi WF.

J Cell Physiol. 2019 May;234(5):6382-6396. doi: 10.1002/jcp.27374. Epub 2018 Sep 21.


The Burden of Human Papillomavirus and Chlamydia trachomatis Coinfection in Women: A Large Cohort Study in Inner Mongolia, China.

Ji Y, Ma XX, Li Z, Peppelenbosch MP, Ma Z, Pan Q.

J Infect Dis. 2019 Jan 7;219(2):206-214. doi: 10.1093/infdis/jiy497.


Hepatitis E virus infection in acute non-traumatic neuropathy: A large prospective case-control study in China.

Wang Y, Wang S, Wu J, Jiang Y, Zhang H, Li S, Liu H, Yang C, Tang H, Guo N, Peppelenbosch MP, Wei L, Pan Q, Zhao J.

EBioMedicine. 2018 Oct;36:122-130. doi: 10.1016/j.ebiom.2018.08.053. Epub 2018 Sep 3.


Conservation and variation of the hepatitis E virus ORF2 capsid protein.

Zhang S, Qu C, Wang Y, Wang W, Ma Z, Peppelenbosch MP, Pan Q.

Gene. 2018 Oct 30;675:157-164. doi: 10.1016/j.gene.2018.06.108. Epub 2018 Jul 2.


Nitazoxanide Inhibits Human Norovirus Replication and Synergizes with Ribavirin by Activation of Cellular Antiviral Response.

Dang W, Xu L, Ma B, Chen S, Yin Y, Chang KO, Peppelenbosch MP, Pan Q.

Antimicrob Agents Chemother. 2018 Oct 24;62(11). pii: e00707-18. doi: 10.1128/AAC.00707-18. Print 2018 Nov.


Incompatible Translation Drives a Convergent Evolution and Viral Attenuation During the Development of Live Attenuated Vaccine.

Ou X, Wang M, Mao S, Cao J, Cheng A, Zhu D, Chen S, Jia R, Liu M, Yang Q, Wu Y, Zhao X, Zhang S, Liu Y, Yu Y, Zhang L, Chen X, Peppelenbosch MP, Pan Q.

Front Cell Infect Microbiol. 2018 Jul 18;8:249. doi: 10.3389/fcimb.2018.00249. eCollection 2018.


Mitochondrial electron transport chain complex III sustains hepatitis E virus replication and represents an antiviral target.

Qu C, Zhang S, Wang W, Li M, Wang Y, van der Heijde-Mulder M, Shokrollahi E, Hakim MS, Raat NJH, Peppelenbosch MP, Pan Q.

FASEB J. 2019 Jan;33(1):1008-1019. doi: 10.1096/fj.201800620R. Epub 2018 Aug 2.


Human mesenchymal stromal cells in adhesion to cell-derived extracellular matrix and titanium: Comparative kinome profile analysis.

Baroncelli M, Fuhler GM, van de Peppel J, Zambuzzi WF, van Leeuwen JP, van der Eerden BCJ, Peppelenbosch MP.

J Cell Physiol. 2019 Mar;234(3):2984-2996. doi: 10.1002/jcp.27116. Epub 2018 Jul 30.


6-Thioguanine inhibits rotavirus replication through suppression of Rac1 GDP/GTP cycling.

Yin Y, Chen S, Hakim MS, Wang W, Xu L, Dang W, Qu C, Verhaar AP, Su J, Fuhler GM, Peppelenbosch MP, Pan Q.

Antiviral Res. 2018 Aug;156:92-101. doi: 10.1016/j.antiviral.2018.06.011. Epub 2018 Jun 18.


Surveillance of premalignant gastric lesions: a multicentre prospective cohort study from low incidence regions.

den Hollander WJ, Holster IL, den Hoed CM, Capelle LG, Tang TJ, Anten MP, Prytz-Berset I, Witteman EM, Ter Borg F, Hartog GD, Bruno MJ, Peppelenbosch MP, Lesterhuis W, Doukas M, Kuipers EJ, Spaander MCW.

Gut. 2019 Apr;68(4):585-593. doi: 10.1136/gutjnl-2017-314498. Epub 2018 Jun 6.


TNF-α exerts potent anti-rotavirus effects via the activation of classical NF-κB pathway.

Hakim MS, Ding S, Chen S, Yin Y, Su J, van der Woude CJ, Fuhler GM, Peppelenbosch MP, Pan Q, Wang W.

Virus Res. 2018 Jul 15;253:28-37. doi: 10.1016/j.virusres.2018.05.022. Epub 2018 May 31.


Basal interferon signaling and therapeutic use of interferons in controlling rotavirus infection in human intestinal cells and organoids.

Hakim MS, Chen S, Ding S, Yin Y, Ikram A, Ma XX, Wang W, Peppelenbosch MP, Pan Q.

Sci Rep. 2018 May 29;8(1):8341. doi: 10.1038/s41598-018-26784-9.


IRF-1, RIG-I and MDA5 display potent antiviral activities against norovirus coordinately induced by different types of interferons.

Dang W, Xu L, Yin Y, Chen S, Wang W, Hakim MS, Chang KO, Peppelenbosch MP, Pan Q.

Antiviral Res. 2018 Jul;155:48-59. doi: 10.1016/j.antiviral.2018.05.004. Epub 2018 May 10.


Gastric cancer and Hedgehog signaling pathway: emerging new paradigms.

Akyala AI, Peppelenbosch MP.

Genes Cancer. 2018 Jan;9(1-2):1-10. doi: 10.18632/genesandcancer.168. Review.


The gastrointestinal microbiota and its role in oncogenesis.

Lam SY, Yu J, Wong SH, Peppelenbosch MP, Fuhler GM.

Best Pract Res Clin Gastroenterol. 2017 Dec;31(6):607-618. doi: 10.1016/j.bpg.2017.09.010. Epub 2017 Sep 5. Review.


Preface to "Gut microbiome in health and disease".

Peppelenbosch MP.

Best Pract Res Clin Gastroenterol. 2017 Dec;31(6):605-606. doi: 10.1016/j.bpg.2017.10.007. Epub 2017 Nov 4. No abstract available.


Low dose Naltrexone for induction of remission in inflammatory bowel disease patients.

Lie MRKL, van der Giessen J, Fuhler GM, de Lima A, Peppelenbosch MP, van der Ent C, van der Woude CJ.

J Transl Med. 2018 Mar 9;16(1):55. doi: 10.1186/s12967-018-1427-5.


Correlating Fecal Calprotectin With Hemoglobin Levels Within 1 Sample.

Fuhler GM, van der Giessen J, van der Woude CJ, Peppelenbosch MP.

Inflamm Bowel Dis. 2018 Feb 15;24(3):663. doi: 10.1093/ibd/izx028. No abstract available.


Helicobacter pylori Pathogenicity Factors Related to Gastric Cancer.

Dadashzadeh K, Peppelenbosch MP, Adamu AI.

Can J Gastroenterol Hepatol. 2017;2017:7942489. doi: 10.1155/2017/7942489. Epub 2017 Dec 17.


Phosphoproteome profiling reveals critical role of JAK-STAT signaling in maintaining chemoresistance in breast cancer.

Nascimento AS, Peres LL, Fari AVS, Milani R, Silva RA, da Costa Fernandes CJ, Peppelenbosch MP, Ferreira-Halder CV, Zambuzzi WF.

Oncotarget. 2017 Oct 10;8(70):114756-114768. doi: 10.18632/oncotarget.21801. eCollection 2017 Dec 29.


Immunity against hepatitis E virus infection: Implications for therapy and vaccine development.

Hakim MS, Ikram A, Zhou J, Wang W, Peppelenbosch MP, Pan Q.

Rev Med Virol. 2018 Mar;28(2). doi: 10.1002/rmv.1964. Epub 2017 Dec 22. Review.


Fecal Matrix Metalloproteinase-9 Measurement for Optimizing Detection of Disease Activity in Inflammatory Bowel Disease.

Kreijne JE, van der Giessen J, Verhaar AP, Peppelenbosch MP, de Vries AC, van der Woude CJ, Fuhler GM.

J Clin Gastroenterol. 2019 May/Jun;53(5):395-397. doi: 10.1097/MCG.0000000000000952. No abstract available.


Genetic polymorphism in ATG16L1 gene is associated with adalimumab use in inflammatory bowel disease.

Nuij VJAA, Peppelenbosch MP, van der Woude CJ, Fuhler GM.

J Transl Med. 2017 Dec 11;15(1):248. doi: 10.1186/s12967-017-1355-9.

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