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Items: 1 to 50 of 58

1.

Modeling determinants of satisfaction with health care in youth with inflammatory bowel disease part 2: semiparametric distributional regression.

Otto-Sobotka F, Peplies J, Timmer A.

Clin Epidemiol. 2019 May 16;11:403-417. doi: 10.2147/CLEP.S191458. eCollection 2019.

2.

School-related experience and performance with inflammatory bowel disease: results from a cross-sectional survey in 675 children and their parents.

Freckmann M, Seipp A, Laass MW, Koletzko S, Claßen M, Ballauff A, Peplies J, Timmer A.

BMJ Open Gastroenterol. 2018 Nov 24;5(1):e000236. doi: 10.1136/bmjgast-2018-000236. eCollection 2018.

3.

Modeling determinants of satisfaction with health care in youth with inflammatory bowel disease: a cross-sectional survey.

Timmer A, de Sordi D, Menke E, Peplies J, Claßen M, Koletzko S, Otto-Sobotka F.

Clin Epidemiol. 2018 Sep 25;10:1289-1305. doi: 10.2147/CLEP.S165554. eCollection 2018.

4.

Pseudomonas-Specific NGS Assay Provides Insight Into Abundance and Dynamics of Pseudomonas Species Including P. aeruginosa in a Cooling Tower.

Pereira RPA, Peplies J, Mushi D, Brettar I, Höfle MG.

Front Microbiol. 2018 Aug 21;9:1958. doi: 10.3389/fmicb.2018.01958. eCollection 2018.

6.

Current health status and medical therapy of patients with pediatric-onset inflammatory bowel disease: a survey-based analysis on 1280 patients aged 10-25 years focusing on differences by age of onset.

Timmer A, Stark R, Peplies J, Classen M, Laass MW, Koletzko S.

Eur J Gastroenterol Hepatol. 2017 Nov;29(11):1276-1283. doi: 10.1097/MEG.0000000000000956.

PMID:
28877085
7.

Statin therapy causes gut dysbiosis in mice through a PXR-dependent mechanism.

Caparrós-Martín JA, Lareu RR, Ramsay JP, Peplies J, Reen FJ, Headlam HA, Ward NC, Croft KD, Newsholme P, Hughes JD, O'Gara F.

Microbiome. 2017 Aug 9;5(1):95. doi: 10.1186/s40168-017-0312-4.

8.

25 years of serving the community with ribosomal RNA gene reference databases and tools.

Glöckner FO, Yilmaz P, Quast C, Gerken J, Beccati A, Ciuprina A, Bruns G, Yarza P, Peplies J, Westram R, Ludwig W.

J Biotechnol. 2017 Nov 10;261:169-176. doi: 10.1016/j.jbiotec.2017.06.1198. Epub 2017 Jun 23. Review.

9.

Bacterial community dynamics in a cooling tower with emphasis on pathogenic bacteria and Legionella species using universal and genus-specific deep sequencing.

Pereira RPA, Peplies J, Höfle MG, Brettar I.

Water Res. 2017 Oct 1;122:363-376. doi: 10.1016/j.watres.2017.06.011. Epub 2017 Jun 6.

PMID:
28622629
10.

Transition from pediatric to adult medical care - A survey in young persons with inflammatory bowel disease.

Timmer A, Peplies J, Westphal M, Kaltz B, Ballauff A, Claßen M, Laass MW, Koletzko S.

PLoS One. 2017 May 18;12(5):e0177757. doi: 10.1371/journal.pone.0177757. eCollection 2017.

11.
12.

Longitudinal associations of lifestyle factors and weight status with insulin resistance (HOMA-IR) in preadolescent children: the large prospective cohort study IDEFICS.

Peplies J, Börnhorst C, Günther K, Fraterman A, Russo P, Veidebaum T, Tornaritis M, De Henauw S, Marild S, Molnar D, Moreno LA, Ahrens W; IDEFICS consortium.

Int J Behav Nutr Phys Act. 2016 Sep 2;13(1):97. doi: 10.1186/s12966-016-0424-4.

13.

Impact of a community based health-promotion programme in 2- to 9-year-old children in Europe on markers of the metabolic syndrome, the IDEFICS study.

Mårild S, Russo P, Veidebaum T, Tornaritis M, De Henauw S, De Bourdeaudhuij I, Molnár D, Moreno LA, Bramsved R, Peplies J, Ahrens W; IDEFICS consortium.

Obes Rev. 2015 Dec;16 Suppl 2:41-56. doi: 10.1111/obr.12368.

PMID:
26707015
14.

JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison.

Richter M, Rosselló-Móra R, Oliver Glöckner F, Peplies J.

Bioinformatics. 2016 Mar 15;32(6):929-31. doi: 10.1093/bioinformatics/btv681. Epub 2015 Nov 16.

15.

Bacterial communities associated with four ctenophore genera from the German Bight (North Sea).

Hao W, Gerdts G, Peplies J, Wichels A.

FEMS Microbiol Ecol. 2015 Jan;91(1):1-11. doi: 10.1093/femsec/fiu006. Epub 2014 Dec 5.

16.

Hydrobacter penzbergensis gen. nov., sp. nov., isolated from purified water.

Eder W, Peplies J, Wanner G, Frühling A, Verbarg S.

Int J Syst Evol Microbiol. 2015 Mar;65(Pt 3):920-6. doi: 10.1099/ijs.0.000040. Epub 2015 Jan 6.

PMID:
25563914
17.

Percentiles of fasting serum insulin, glucose, HbA1c and HOMA-IR in pre-pubertal normal weight European children from the IDEFICS cohort.

Peplies J, Jiménez-Pavón D, Savva SC, Buck C, Günther K, Fraterman A, Russo P, Iacoviello L, Veidebaum T, Tornaritis M, De Henauw S, Mårild S, Molnár D, Moreno LA, Ahrens W; IDEFICS consortium.

Int J Obes (Lond). 2014 Sep;38 Suppl 2:S39-47. doi: 10.1038/ijo.2014.134.

PMID:
25376219
18.

Blood lipids among young children in Europe: results from the European IDEFICS study.

De Henauw S, Michels N, Vyncke K, Hebestreit A, Russo P, Intemann T, Peplies J, Fraterman A, Eiben G, de Lorgeril M, Tornaritis M, Molnar D, Veidebaum T, Ahrens W, Moreno LA; IDEFICS consortium.

Int J Obes (Lond). 2014 Sep;38 Suppl 2:S67-75. doi: 10.1038/ijo.2014.137.

PMID:
25219412
19.

Microbial lipids reveal carbon assimilation patterns on hydrothermal sulfide chimneys.

Reeves EP, Yoshinaga MY, Pjevac P, Goldenstein NI, Peplies J, Meyerdierks A, Amann R, Bach W, Hinrichs KU.

Environ Microbiol. 2014 Nov;16(11):3515-32. doi: 10.1111/1462-2920.12525. Epub 2014 Jul 7.

PMID:
24905086
20.

No breakfast at home: association with cardiovascular disease risk factors in childhood.

Papoutsou S, Briassoulis G, Wolters M, Peplies J, Iacoviello L, Eiben G, Veidebaum T, Molnar D, Russo P, Michels N, Moreno LA, Tornaritis M; IDEFICS consortium.

Eur J Clin Nutr. 2014 Jul;68(7):829-34. doi: 10.1038/ejcn.2014.88. Epub 2014 May 21.

PMID:
24848628
21.

Diverse sulfate-reducing bacteria of the Desulfosarcina/Desulfococcus clade are the key alkane degraders at marine seeps.

Kleindienst S, Herbst FA, Stagars M, von Netzer F, von Bergen M, Seifert J, Peplies J, Amann R, Musat F, Lueders T, Knittel K.

ISME J. 2014 Oct;8(10):2029-44. doi: 10.1038/ismej.2014.51. Epub 2014 Apr 10.

22.

Measuring satisfaction with health care in young persons with inflammatory bowel disease--an instrument development and validation study.

Sadlo A, Altevers J, Peplies J, Kaltz B, Claßen M, Bauer A, Koletzko S, Timmer A.

BMC Health Serv Res. 2014 Mar 1;14:97. doi: 10.1186/1472-6963-14-97.

23.

Early life course risk factors for childhood obesity: the IDEFICS case-control study.

Bammann K, Peplies J, De Henauw S, Hunsberger M, Molnar D, Moreno LA, Tornaritis M, Veidebaum T, Ahrens W, Siani A; IDEFICS Consortium.

PLoS One. 2014 Feb 13;9(2):e86914. doi: 10.1371/journal.pone.0086914. eCollection 2014.

24.

The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks.

Yilmaz P, Parfrey LW, Yarza P, Gerken J, Pruesse E, Quast C, Schweer T, Peplies J, Ludwig W, Glöckner FO.

Nucleic Acids Res. 2014 Jan;42(Database issue):D643-8. doi: 10.1093/nar/gkt1209. Epub 2013 Nov 28.

25.

Close association of active nitrifiers with Beggiatoa mats covering deep-sea hydrothermal sediments.

Winkel M, de Beer D, Lavik G, Peplies J, Mußmann M.

Environ Microbiol. 2014 Jun;16(6):1612-26. doi: 10.1111/1462-2920.12316. Epub 2013 Nov 28.

PMID:
24286252
26.

High-sensitivity C-reactive protein is a predictive factor of adiposity in children: results of the identification and prevention of dietary- and lifestyle-induced health effects in children and infants (IDEFICS) study.

Nappo A, Iacoviello L, Fraterman A, Gonzalez-Gil EM, Hadjigeorgiou C, Marild S, Molnar D, Moreno LA, Peplies J, Sioen I, Veidebaum T, Siani A, Russo P.

J Am Heart Assoc. 2013 Jun 6;2(3):e000101. doi: 10.1161/JAHA.113.000101.

27.

Gene sets for utilization of primary and secondary nutrition supplies in the distal gut of endangered Iberian lynx.

Alcaide M, Messina E, Richter M, Bargiela R, Peplies J, Huws SA, Newbold CJ, Golyshin PN, Simón MA, López G, Yakimov MM, Ferrer M.

PLoS One. 2012;7(12):e51521. doi: 10.1371/journal.pone.0051521. Epub 2012 Dec 12.

28.

Food consumption and cardiovascular risk factors in European children: the IDEFICS study.

Bel-Serrat S, Mouratidou T, Börnhorst C, Peplies J, De Henauw S, Marild S, Molnár D, Siani A, Tornaritis M, Veidebaum T, Krogh V, Moreno LA.

Pediatr Obes. 2013 Jun;8(3):225-36. doi: 10.1111/j.2047-6310.2012.00107.x. Epub 2012 Dec 6.

PMID:
23225768
29.

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools.

Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glöckner FO.

Nucleic Acids Res. 2013 Jan;41(Database issue):D590-6. doi: 10.1093/nar/gks1219. Epub 2012 Nov 28.

30.

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies.

Klindworth A, Pruesse E, Schweer T, Peplies J, Quast C, Horn M, Glöckner FO.

Nucleic Acids Res. 2013 Jan 7;41(1):e1. doi: 10.1093/nar/gks808. Epub 2012 Aug 28.

31.

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota.

Bulgarelli D, Rott M, Schlaeppi K, Ver Loren van Themaat E, Ahmadinejad N, Assenza F, Rauf P, Huettel B, Reinhardt R, Schmelzer E, Peplies J, Gloeckner FO, Amann R, Eickhorst T, Schulze-Lefert P.

Nature. 2012 Aug 2;488(7409):91-5. doi: 10.1038/nature11336.

PMID:
22859207
32.

Microbial and chemical characterization of underwater fresh water springs in the Dead Sea.

Ionescu D, Siebert C, Polerecky L, Munwes YY, Lott C, Häusler S, Bižić-Ionescu M, Quast C, Peplies J, Glöckner FO, Ramette A, Rödiger T, Dittmar T, Oren A, Geyer S, Stärk HJ, Sauter M, Licha T, Laronne JB, de Beer D.

PLoS One. 2012;7(6):e38319. doi: 10.1371/journal.pone.0038319. Epub 2012 Jun 5.

33.

SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.

Pruesse E, Peplies J, Glöckner FO.

Bioinformatics. 2012 Jul 15;28(14):1823-9. doi: 10.1093/bioinformatics/bts252. Epub 2012 May 3.

34.

Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom.

Teeling H, Fuchs BM, Becher D, Klockow C, Gardebrecht A, Bennke CM, Kassabgy M, Huang S, Mann AJ, Waldmann J, Weber M, Klindworth A, Otto A, Lange J, Bernhardt J, Reinsch C, Hecker M, Peplies J, Bockelmann FD, Callies U, Gerdts G, Wichels A, Wiltshire KH, Glöckner FO, Schweder T, Amann R.

Science. 2012 May 4;336(6081):608-11. doi: 10.1126/science.1218344.

35.

Blood cells as a source of transcriptional biomarkers of childhood obesity and its related metabolic alterations: results of the IDEFICS study.

Sánchez J, Priego T, Picó C, Ahrens W, De Henauw S, Fraterman A, Mårild S, Molnár D, Moreno LA, Peplies J, Russo P, Siani A, Tornaritis M, Veidebaum T, Palou A; IDEFICS Consortium.

J Clin Endocrinol Metab. 2012 Apr;97(4):E648-52. doi: 10.1210/jc.2011-2209. Epub 2012 Jan 25.

PMID:
22278432
36.

Single-cell analysis reveals a novel uncultivated magnetotactic bacterium within the candidate division OP3.

Kolinko S, Jogler C, Katzmann E, Wanner G, Peplies J, Schüler D.

Environ Microbiol. 2012 Jul;14(7):1709-21. doi: 10.1111/j.1462-2920.2011.02609.x. Epub 2011 Oct 18.

PMID:
22003954
37.

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.

Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, Sterk P, Arumugam M, Bailey M, Baumgartner L, Birren BW, Blaser MJ, Bonazzi V, Booth T, Bork P, Bushman FD, Buttigieg PL, Chain PS, Charlson E, Costello EK, Huot-Creasy H, Dawyndt P, DeSantis T, Fierer N, Fuhrman JA, Gallery RE, Gevers D, Gibbs RA, San Gil I, Gonzalez A, Gordon JI, Guralnick R, Hankeln W, Highlander S, Hugenholtz P, Jansson J, Kau AL, Kelley ST, Kennedy J, Knights D, Koren O, Kuczynski J, Kyrpides N, Larsen R, Lauber CL, Legg T, Ley RE, Lozupone CA, Ludwig W, Lyons D, Maguire E, Methé BA, Meyer F, Muegge B, Nakielny S, Nelson KE, Nemergut D, Neufeld JD, Newbold LK, Oliver AE, Pace NR, Palanisamy G, Peplies J, Petrosino J, Proctor L, Pruesse E, Quast C, Raes J, Ratnasingham S, Ravel J, Relman DA, Assunta-Sansone S, Schloss PD, Schriml L, Sinha R, Smith MI, Sodergren E, Spo A, Stombaugh J, Tiedje JM, Ward DV, Weinstock GM, Wendel D, White O, Whiteley A, Wilke A, Wortman JR, Yatsunenko T, Glöckner FO.

Nat Biotechnol. 2011 May;29(5):415-20. doi: 10.1038/nbt.1823.

38.

Design and results of the pretest of the IDEFICS study.

Suling M, Hebestreit A, Peplies J, Bammann K, Nappo A, Eiben G, Alvira JM, Verbestel V, Kovács E, Pitsiladis YP, Veidebaum T, Hadjigeorgiou C, Knof K, Ahrens W; IDEFICS Consortium.

Int J Obes (Lond). 2011 Apr;35 Suppl 1:S30-44. doi: 10.1038/ijo.2011.33.

PMID:
21483421
39.

DNA yield and quality of saliva samples and suitability for large-scale epidemiological studies in children.

Koni AC, Scott RA, Wang G, Bailey ME, Peplies J, Bammann K, Pitsiladis YP; IDEFICS Consortium.

Int J Obes (Lond). 2011 Apr;35 Suppl 1:S113-8. doi: 10.1038/ijo.2011.43.

PMID:
21483410
40.

Influence of sample collection and preanalytical sample processing on the analyses of biological markers in the European multicentre study IDEFICS.

Peplies J, Günther K, Bammann K, Fraterman A, Russo P, Veidebaum T, Tornaritis M, Vanaelst B, Mårild S, Molnár D, Moreno LA, Ahrens W; IDEFICS Consortium.

Int J Obes (Lond). 2011 Apr;35 Suppl 1:S104-12. doi: 10.1038/ijo.2011.41.

PMID:
21483409
41.

Quality management for the collection of biological samples in multicentre studies.

Peplies J, Fraterman A, Scott R, Russo P, Bammann K.

Eur J Epidemiol. 2010 Sep;25(9):607-17. doi: 10.1007/s10654-010-9481-1. Epub 2010 Jun 22.

PMID:
20567998
42.

Identification and phylogeny of eukaryotic 18S rDNA phylotypes detected in chlorinated finished drinking water samples from three Parisian surface water treatment plants.

Poitelon JB, Joyeux M, Welté B, Duguet JP, Peplies J, DuBow MS.

Lett Appl Microbiol. 2009 Nov;49(5):589-95. doi: 10.1111/j.1472-765X.2009.02710.x. Epub 2009 Aug 7.

43.

Microbial changes in periodontitis successfully treated by mechanical plaque removal and systemic amoxicillin and metronidazole.

Valenza G, Veihelmann S, Peplies J, Tichy D, Roldan-Pareja Mdel C, Schlagenhauf U, Vogel U.

Int J Med Microbiol. 2009 Aug;299(6):427-38. doi: 10.1016/j.ijmm.2009.03.001. Epub 2009 May 15.

PMID:
19447073
44.

Proceedings of the international workshop on Ribosomal RNA technology, April 7-9, 2008, Bremen, Germany.

Amaral-Zettler L, Peplies J, Ramette A, Fuchs B, Ludwig W, Glöckner FO.

Syst Appl Microbiol. 2008 Sep;31(4):258-68. doi: 10.1016/j.syapm.2008.08.004.

PMID:
18922366
45.

A standard operating procedure for phylogenetic inference (SOPPI) using (rRNA) marker genes.

Peplies J, Kottmann R, Ludwig W, Glöckner FO.

Syst Appl Microbiol. 2008 Sep;31(4):251-7. doi: 10.1016/j.syapm.2008.08.003. Epub 2008 Sep 10.

PMID:
18786793
46.

The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains.

Yarza P, Richter M, Peplies J, Euzeby J, Amann R, Schleifer KH, Ludwig W, Glöckner FO, Rosselló-Móra R.

Syst Appl Microbiol. 2008 Sep;31(4):241-50. doi: 10.1016/j.syapm.2008.07.001. Epub 2008 Aug 9.

PMID:
18692976
47.

JCoast - a biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes.

Richter M, Lombardot T, Kostadinov I, Kottmann R, Duhaime MB, Peplies J, Glöckner FO.

BMC Bioinformatics. 2008 Apr 1;9:177. doi: 10.1186/1471-2105-9-177.

48.

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB.

Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glöckner FO.

Nucleic Acids Res. 2007;35(21):7188-96. Epub 2007 Oct 18.

49.

[IDEFICS: a multicenter European project on diet- and lifestyle-related disorders in children].

Bammann K, Peplies J, Pigeot I, Ahrens W.

Med Klin (Munich). 2007 Mar 15;102(3):230-5. German.

PMID:
17345019
50.

Transcriptional organization and regulation of magnetosome operons in Magnetospirillum gryphiswaldense.

Schübbe S, Würdemann C, Peplies J, Heyen U, Wawer C, Glöckner FO, Schüler D.

Appl Environ Microbiol. 2006 Sep;72(9):5757-65.

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