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Structural and Functional Changes in Prokaryotic Communities in Artificial Pit Mud during Chinese Baijiu Production.

Liu MK, Tang YM, Guo XJ, Zhao K, Penttinen P, Tian XH, Zhang XY, Ren DQ, Zhang XP.

mSystems. 2020 Mar 24;5(2). pii: e00829-19. doi: 10.1128/mSystems.00829-19.


Early Introduction of Severe Acute Respiratory Syndrome Coronavirus 2 into Europe.

Olsen SJ, Chen MY, Liu YL, Witschi M, Ardoin A, Calba C, Mathieu P, Masserey V, Maraglino F, Marro S, Penttinen P, Robesyn E, Pukkila J; European COVID-19 Work Group.

Emerg Infect Dis. 2020 Mar 20;26(7). doi: 10.3201/eid2607.200359. [Epub ahead of print]


Alternating patterns of seasonal influenza activity in the WHO European Region following the 2009 pandemic, 2010-2018.

Mook P, Meerhoff T, Olsen SJ, Snacken R, Adlhoch C, Pereyaslov D, Broberg EK, Melidou A, Brown C, Penttinen P; Collective of the WHO European Region, European Influenza Surveillance Network.

Influenza Other Respir Viruses. 2020 Mar;14(2):150-161. doi: 10.1111/irv.12703. Epub 2020 Jan 16.


Rice-duck co-culture integrated different fertilizers reduce P losses and Pb accumulation in subtropical China.

Gao H, Dai W, Fang K, Yi X, Chen N, Penttinen P, Sha Z, Cao L.

Chemosphere. 2020 Apr;245:125571. doi: 10.1016/j.chemosphere.2019.125571. Epub 2019 Dec 16.


Alteration of soil nitrifiers and denitrifiers and their driving factors during intensive management of Moso bamboo (Phyllostachys pubescens).

Cao L, Yu X, Liu C, Liu M, Chen J, Qin H, Liang C, Xu Q, Penttinen P.

Sci Total Environ. 2020 Feb 25;705:135236. doi: 10.1016/j.scitotenv.2019.135236. Epub 2019 Nov 23.


Low 2018/19 vaccine effectiveness against influenza A(H3N2) among 15-64-year-olds in Europe: exploration by birth cohort.

Kissling E, Pozo F, Buda S, Vilcu AM, Gherasim A, Brytting M, Domegan L, Gómez V, Meijer A, Lazar M, Vučina VV, Dürrwald R, van der Werf S, Larrauri A, Enkirch T, O'Donnell J, Guiomar R, Hooiveld M, Petrović G, Stoian E, Penttinen P, Valenciano M; I-Move Primary Care Study Team.

Euro Surveill. 2019 Nov;24(48). doi: 10.2807/1560-7917.ES.2019.24.48.1900604.


Effectiveness of influenza vaccine against influenza A in Europe in seasons of different A(H1N1)pdm09 and the same A(H3N2) vaccine components (2016-17 and 2017-18).

Kissling E, Pozo F, Buda S, Vilcu AM, Rizzo C, Gherasim A, Horváth JK, Brytting M, Domegan L, Meijer A, Paradowska-Stankiewicz I, Machado A, Vučina VV, Lazar M, Johansen K, Dürrwald R, van der Werf S, Bella A, Larrauri A, Ferenczi A, Zakikhany K, O'Donnell J, Dijkstra F, Bogusz J, Guiomar R, Filipović SK, Pitigoi D, Penttinen P, Valenciano M; I-MOVE/I-MOVE+ study team.

Vaccine X. 2019 Sep 17;3:100042. doi: 10.1016/j.jvacx.2019.100042. eCollection 2019 Dec 10.


Current practices for respiratory syncytial virus surveillance across the EU/EEA Member States, 2017.

Mollers M, Barnadas C, Broberg EK, Penttinen P, Teirlinck AC, Fischer TK; European Influenza Surveillance Network.

Euro Surveill. 2019 Oct;24(40). doi: 10.2807/1560-7917.ES.2019.24.40.1900157.


European Pandemic Influenza Preparedness Planning: A Review of National Plans, July 2016.

Droogers M, Ciotti M, Kreidl P, Melidou A, Penttinen P, Sellwood C, Tsolova S, Snacken R.

Disaster Med Public Health Prep. 2019 Jun;13(3):582-592. doi: 10.1017/dmp.2018.60.


Incidence, Severity and Impact of Influenza: a joint meeting organised by the ISIRV Epidemiology Group and ECDC, Stockholm, 2019.

Rath B, Penttinen P.

Euro Surveill. 2019 Jun;24(23). doi: 10.2807/1560-7917.ES.2019.24.23.1900348. No abstract available.


Malaria morbidity and mortality following introduction of a universal policy of artemisinin-based treatment for malaria in Papua, Indonesia: A longitudinal surveillance study.

Kenangalem E, Poespoprodjo JR, Douglas NM, Burdam FH, Gdeumana K, Chalfein F, Prayoga, Thio F, Devine A, Marfurt J, Waramori G, Yeung S, Noviyanti R, Penttinen P, Bangs MJ, Sugiarto P, Simpson JA, Soenarto Y, Anstey NM, Price RN.

PLoS Med. 2019 May 29;16(5):e1002815. doi: 10.1371/journal.pmed.1002815. eCollection 2019 May.


Bioavailability of heavy metals in contaminated soil as affected by different mass ratios of biochars.

Xu W, Shafi M, Penttinen P, Hou S, Wang X, Ma J, Zhong B, Guo J, Xu M, Ye Z, Fu L, Huang Q, Liu D.

Environ Technol. 2019 May 13:1-9. doi: 10.1080/21622515.2019.1609096. [Epub ahead of print]


Co-circulation of influenza A(H1N1)pdm09 and influenza A(H3N2) viruses, World Health Organization (WHO) European Region, October 2018 to February 2019.

Segaloff H, Melidou A, Adlhoch C, Pereyaslov D, Robesyn E, Penttinen P, Olsen SJ; Who European Region And The European Influenza Surveillance Network.

Euro Surveill. 2019 Feb;24(9). doi: 10.2807/1560-7917.ES.2019.24.9.1900125.


European all-cause excess and influenza-attributable mortality in the 2017/18 season: should the burden of influenza B be reconsidered?

Nielsen J, Vestergaard LS, Richter L, Schmid D, Bustos N, Asikainen T, Trebbien R, Denissov G, Innos K, Virtanen MJ, Fouillet A, Lytras T, Gkolfinopoulou K, Heiden MA, Grabenhenrich L, Uphoff H, Paldy A, Bobvos J, Domegan L, O'Donnell J, Scortichini M, de Martino A, Mossong J, England K, Melillo J, van Asten L, de Lange MM, Tønnessen R, White RA, da Silva SP, Rodrigues AP, Larrauri A, Mazagatos C, Farah A, Carnahan AD, Junker C, Sinnathamby M, Pebody RG, Andrews N, Reynolds A, McMenamin J, Brown CS, Adlhoch C, Penttinen P, Mølbak K, Krause TG.

Clin Microbiol Infect. 2019 Oct;25(10):1266-1276. doi: 10.1016/j.cmi.2019.02.011. Epub 2019 Feb 18.


Contrasting dynamics of polychlorinated biphenyl dissipation and fungal community composition in low and high organic carbon soils with biochar amendment.

Huang S, Shan M, Chen J, Penttinen P, Qin H.

Environ Sci Pollut Res Int. 2018 Nov;25(33):33432-33442. doi: 10.1007/s11356-018-3271-9. Epub 2018 Sep 28.


Actinobacteria associated with Glycyrrhiza inflata Bat. are diverse and have plant growth promoting and antimicrobial activity.

Zhao K, Li J, Zhang X, Chen Q, Liu M, Ao X, Gu Y, Liao D, Xu K, Ma M, Yu X, Xiang Q, Chen J, Zhang X, Penttinen P.

Sci Rep. 2018 Sep 12;8(1):13661. doi: 10.1038/s41598-018-32097-8.


Actinobacteria associated with Chinaberry tree are diverse and show antimicrobial activity.

Zhao K, Li J, Shen M, Chen Q, Liu M, Ao X, Liao D, Gu Y, Xu K, Ma M, Yu X, Xiang Q, Chen J, Zhang X, Penttinen P.

Sci Rep. 2018 Jul 23;8(1):11103. doi: 10.1038/s41598-018-29442-2.


Protective Measures for Humans against Avian Influenza A(H5N8) Outbreaks in 22 European Union/European Economic Area Countries and Israel, 2016-17.

Adlhoch C, Dabrera G, Penttinen P, Pebody R; Country Experts.

Emerg Infect Dis. 2018 Oct;24(10):1-8. doi: 10.3201/eid2410.180269. Epub 2018 Oct 17.


Faba Bean (Vicia faba L.) Nodulating Rhizobia in Panxi, China, Are Diverse at Species, Plant Growth Promoting Ability, and Symbiosis Related Gene Levels.

Chen YX, Zou L, Penttinen P, Chen Q, Li QQ, Wang CQ, Xu KW.

Front Microbiol. 2018 Jun 20;9:1338. doi: 10.3389/fmicb.2018.01338. eCollection 2018.


Are we missing respiratory viral infections in infants and children? Comparison of a hospital-based quality management system with standard of care.

Alchikh M, Conrad T, Hoppe C, Ma X, Broberg E, Penttinen P, Reiche J, Biere B, Schweiger B, Rath B.

Clin Microbiol Infect. 2019 Mar;25(3):380.e9-380.e16. doi: 10.1016/j.cmi.2018.05.023. Epub 2018 Jun 12.


Dominant influenza A(H3N2) and B/Yamagata virus circulation in EU/EEA, 2016/17 and 2017/18 seasons, respectively.

Adlhoch C, Snacken R, Melidou A, Ionescu S, Penttinen P; The European Influenza Surveillance Network.

Euro Surveill. 2018 Mar;23(13). doi: 10.2807/1560-7917.ES.2018.23.13.18-00146.


Bacterial community changes in response to oil contamination and perennial crop cultivation.

Yan L, Penttinen P, Mikkonen A, Lindström K.

Environ Sci Pollut Res Int. 2018 May;25(15):14575-14584. doi: 10.1007/s11356-018-1635-9. Epub 2018 Mar 12.


Seasonality and geographical spread of respiratory syncytial virus epidemics in 15 European countries, 2010 to 2016.

Broberg EK, Waris M, Johansen K, Snacken R, Penttinen P; European Influenza Surveillance Network.

Euro Surveill. 2018 Feb;23(5). doi: 10.2807/1560-7917.ES.2018.23.5.17-00284.


Surveillance and laboratory detection for non-polio enteroviruses in the European Union/European Economic Area, 2016.

Harvala H, Jasir A, Penttinen P, Pastore Celentano L, Greco D, Broberg E.

Euro Surveill. 2017 Nov;22(45). doi: 10.2807/1560-7917.ES.2017.22.45.16-00807.


Excess all-cause and influenza-attributable mortality in Europe, December 2016 to February 2017.

Vestergaard LS, Nielsen J, Krause TG, Espenhain L, Tersago K, Bustos Sierra N, Denissov G, Innos K, Virtanen MJ, Fouillet A, Lytras T, Paldy A, Bobvos J, Domegan L, O'Donnell J, Scortichini M, de Martino A, England K, Calleja N, van Asten L, Teirlinck AC, Tønnessen R, White RA, P Silva S, Rodrigues AP, Larrauri A, Leon I, Farah A, Junker C, Sinnathamby M, Pebody RG, Reynolds A, Bishop J, Gross D, Adlhoch C, Penttinen P, Mølbak K.

Euro Surveill. 2017 Apr 6;22(14). pii: 30506. doi: 10.2807/1560-7917.ES.2017.22.14.30506.


Letter to the editor: Just a coincidence? Two severe human cases due to swine influenza (SIV) A(H1N1)v in Europe, October 2016.

Adlhoch C, Penttinen P.

Euro Surveill. 2017 Mar 9;22(10). pii: 30478. doi: 10.2807/1560-7917.ES.2017.22.10.30478. No abstract available.


Highly pathogenic avian influenza A(H5N8) outbreaks: protection and management of exposed people in Europe, 2014/15 and 2016.

Adlhoch C, Brown IH, Angelova SG, Bálint Á, Bouwstra R, Buda S, Castrucci MR, Dabrera G, Dán Á, Grund C, Harder T, van der Hoek W, Krisztalovics K, Parry-Ford F, Popescu R, Wallensten A, Zdravkova A, Zohari S, Tsolova S, Penttinen P.

Euro Surveill. 2016 Dec 8;21(49). pii: 30419. doi: 10.2807/1560-7917.ES.2016.21.49.30419.


Genetic Diversity and Symbiotic Efficiency of Nodulating Rhizobia Isolated from Root Nodules of Faba Bean in One Field.

Zou L, Chen YX, Penttinen P, Lan Q, Wang K, Liu M, Peng D, Zhang X, Chen Q, Zhao K, Zeng X, Xu KW.

PLoS One. 2016 Dec 9;11(12):e0167804. doi: 10.1371/journal.pone.0167804. eCollection 2016.


Pongamia pinnata inoculated with Bradyrhizobium liaoningense PZHK1 shows potential for phytoremediation of mine tailings.

Yu X, Li Y, Li Y, Xu C, Cui Y, Xiang Q, Gu Y, Zhao K, Zhang X, Penttinen P, Chen Q.

Appl Microbiol Biotechnol. 2017 Feb;101(4):1739-1751. doi: 10.1007/s00253-016-7996-4. Epub 2016 Nov 17.


Author's reply: Regarding the editorial by Penttinen and Friede.

Penttinen PM, Friede MH.

Euro Surveill. 2016 Oct 6;21(40). doi: 10.2807/1560-7917.ES.2016.21.40.30367. No abstract available.


Decreased effectiveness of the influenza A(H1N1)pdm09 strain in live attenuated influenza vaccines: an observational bias or a technical challenge?

Penttinen PM, Friede MH.

Euro Surveill. 2016 Sep 22;21(38). doi: 10.2807/1560-7917.ES.2016.21.38.30350. No abstract available. Erratum in: Euro Surveill. 2016 Sep 29;21(39):.


Observed and projected drivers of emerging infectious diseases in Europe.

Semenza JC, Rocklöv J, Penttinen P, Lindgren E.

Ann N Y Acad Sci. 2016 Oct;1382(1):73-83. doi: 10.1111/nyas.13132. Epub 2016 Jul 19. Review.


Isolation and antimicrobial activities of actinobacteria closely associated with liquorice plants Glycyrrhiza glabra L. and Glycyrrhiza inflate BAT. in Xinjiang, China.

Zhao K, Zhao C, Liao P, Zhang Q, Li Y, Liu M, Ao X, Gu Y, Liao D, Xu K, Yu X, Xiang Q, Huang C, Chen Q, Zhang L, Zhang X, Penttinen P.

Microbiology. 2016 Jul;162(7):1135-1146. doi: 10.1099/mic.0.000301. Epub 2016 May 4.


Determinants and Drivers of Infectious Disease Threat Events in Europe.

Semenza JC, Lindgren E, Balkanyi L, Espinosa L, Almqvist MS, Penttinen P, Rocklöv J.

Emerg Infect Dis. 2016 Apr;22(4):581-9. doi: 10.3201/eid2204.


ECDC expert opinion on efficacy and effectiveness of neuraminidase inhibitors published for public consultation.

Penttinen P, Catchpole M.

Influenza Other Respir Viruses. 2016 May;10(3):152-3. doi: 10.1111/irv.12377. No abstract available.


Divergent genes in potential inoculant Sinorhizobium strains are related to DNA replication, recombination, and repair.

Penttinen P, Greco D, Muntyan V, Terefework Z, De Lajudie P, Roumiantseva M, Becker A, Auvinen P, Lindström K.

J Basic Microbiol. 2016 Jun;56(6):680-5. doi: 10.1002/jobm.201500592. Epub 2016 Feb 16.


Diversity and phylogeny of rhizobia associated with Desmodium spp. in Panxi, Sichuan, China.

Xu KW, Zou L, Penttinen P, Zeng X, Liu M, Zhao K, Chen C, Chen YX, Zhang X.

Syst Appl Microbiol. 2016 Feb;39(1):33-40. doi: 10.1016/j.syapm.2015.10.005. Epub 2015 Dec 1.


Characterization of successional changes in bacterial community composition during bioremediation of used motor oil-contaminated soil in a boreal climate.

Yan L, Sinkko H, Penttinen P, Lindström K.

Sci Total Environ. 2016 Jan 15;542(Pt A):817-25. doi: 10.1016/j.scitotenv.2015.10.144. Epub 2015 Nov 7.


Symbiotic effectiveness and phylogeny of rhizobia isolated from faba bean (Vicia faba L.) in Sichuan hilly areas, China.

Xu KW, Zou L, Penttinen P, Wang K, Heng NN, Zhang XP, Chen Q, Zhao K, Chen YX.

Syst Appl Microbiol. 2015 Oct;38(7):515-23. doi: 10.1016/j.syapm.2015.06.009. Epub 2015 Jul 22.


Perennial crop growth in oil-contaminated soil in a boreal climate.

Yan L, Penttinen P, Simojoki A, Stoddard FL, Lindström K.

Sci Total Environ. 2015 Nov 1;532:752-61. doi: 10.1016/j.scitotenv.2015.06.052. Epub 2015 Jun 26.


Influenza case definitions - optimising sensitivity and specificity.

Penttinen P, Pebody R.

Euro Surveill. 2015 Jun 4;20(22):21148. No abstract available.


Assessment of human influenza pandemic scenarios in Europe.

Napoli C, Fabiani M, Rizzo C, Barral M, Oxford J, Cohen J, Niddam L, Goryński P, Pistol A, Lionis C, Briand S, Nicoll A, Penttinen P, Gauci C, Bounekkar A, Bonnevay S, Beresniak A.

Euro Surveill. 2015 Feb 19;20(7):29-38. Review. No abstract available.


Start of the 2014/15 influenza season in Europe: drifted influenza A(H3N2) viruses circulate as dominant subtype.

Broberg E, Snacken R, Adlhoch C, Beauté J, Galinska M, Pereyaslov D, Brown C, Penttinen P; WHO European Region and the European Influenza Surveillance Network.

Euro Surveill. 2015 Jan 29;20(4). pii: 21023. No abstract available.


Comparing introduction to Europe of highly pathogenic avian influenza viruses A(H5N8) in 2014 and A(H5N1) in 2005.

Adlhoch C, Gossner C, Koch G, Brown I, Bouwstra R, Verdonck F, Penttinen P, Harder T.

Euro Surveill. 2014 Dec 18;19(50):20996.


Human-Dromedary Camel Interactions and the Risk of Acquiring Zoonotic Middle East Respiratory Syndrome Coronavirus Infection.

Gossner C, Danielson N, Gervelmeyer A, Berthe F, Faye B, Kaasik Aaslav K, Adlhoch C, Zeller H, Penttinen P, Coulombier D.

Zoonoses Public Health. 2016 Feb;63(1):1-9. doi: 10.1111/zph.12171. Epub 2014 Dec 27. Review.


Influenza season 2013/14 has started in Europe with influenza A(H1)pdm09 virus being the most prevalent subtype.

Adlhoch C, Broberg E, Beauté J, Snacken R, Bancroft E, Zucs P, Penttinen P; European Influenza Surveillance Network (EISN).

Euro Surveill. 2014 Jan 30;19(4). pii: 20686. No abstract available.


[Endophytic bacterial diversity in Codonopsis pilosula, Ephedra sinica, and Lamiophlomis rotate: a study with LH-PCR].

Li XL, Jiang HM, Zhang B, Tang GQ, Penttinen P, Zeng Z, Zheng LY, Zhang XP.

Ying Yong Sheng Tai Xue Bao. 2013 Sep;24(9):2511-7. Chinese.


Stable isotope labelling reveals that NaCl stress decreases the production of Ensifer (Sinorhizobium) arboris lipochitooligosaccharide signalling molecules.

Penttinen P, Räsänen LA, Lortet G, Lindström K.

FEMS Microbiol Lett. 2013 Dec;349(2):117-26. doi: 10.1111/1574-6968.12303. Epub 2013 Nov 18.


Taking stock of the first 133 MERS coronavirus cases globally--Is the epidemic changing?

Penttinen PM, Kaasik-Aaslav K, Friaux A, Donachie A, Sudre B, Amato-Gauci AJ, Memish ZA, Coulombier D.

Euro Surveill. 2013 Sep 26;18(39). pii: 20596.


Maize rhizosphere in Sichuan, China, hosts plant growth promoting Burkholderia cepacia with phosphate solubilizing and antifungal abilities.

Zhao K, Penttinen P, Zhang X, Ao X, Liu M, Yu X, Chen Q.

Microbiol Res. 2014 Jan 20;169(1):76-82. doi: 10.1016/j.micres.2013.07.003. Epub 2013 Aug 6.

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