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Items: 41

1.

Altered Expression of an FT Cluster Underlies a Major Locus Controlling Domestication-Related Changes to Chickpea Phenology and Growth Habit.

Ortega R, Hecht VFG, Freeman JS, Rubio J, Carrasquilla-Garcia N, Mir RR, Penmetsa RV, Cook DR, Millan T, Weller JL.

Front Plant Sci. 2019 Jul 3;10:824. doi: 10.3389/fpls.2019.00824. eCollection 2019.

2.

Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits.

Varshney RK, Thudi M, Roorkiwal M, He W, Upadhyaya HD, Yang W, Bajaj P, Cubry P, Rathore A, Jian J, Doddamani D, Khan AW, Garg V, Chitikineni A, Xu D, Gaur PM, Singh NP, Chaturvedi SK, Nadigatla GVPR, Krishnamurthy L, Dixit GP, Fikre A, Kimurto PK, Sreeman SM, Bharadwaj C, Tripathi S, Wang J, Lee SH, Edwards D, Polavarapu KKB, Penmetsa RV, Crossa J, Nguyen HT, Siddique KHM, Colmer TD, Sutton T, von Wettberg E, Vigouroux Y, Xu X, Liu X.

Nat Genet. 2019 May;51(5):857-864. doi: 10.1038/s41588-019-0401-3. Epub 2019 Apr 29.

PMID:
31036963
3.

Uneven recombination rate and linkage disequilibrium across a reference SNP map for common bean (Phaseolus vulgaris L.).

Blair MW, Cortés AJ, Farmer AD, Huang W, Ambachew D, Penmetsa RV, Carrasquilla-Garcia N, Assefa T, Cannon SB.

PLoS One. 2018 Mar 9;13(3):e0189597. doi: 10.1371/journal.pone.0189597. eCollection 2018.

4.

Genetic Diversity, Population Structure, and Genetic Correlation with Climatic Variation in Chickpea (Cicer arietinum) Landraces from Pakistan.

Sani SGAS, Chang PL, Zubair A, Carrasquilla-Garcia N, Cordeiro M, Penmetsa RV, Munis MFH, Nuzhdin SV, Cook DR, von Wettberg EJ.

Plant Genome. 2018 Mar;11(1). doi: 10.3835/plantgenome2017.08.0067.

5.

Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation.

von Wettberg EJB, Chang PL, Başdemir F, Carrasquila-Garcia N, Korbu LB, Moenga SM, Bedada G, Greenlon A, Moriuchi KS, Singh V, Cordeiro MA, Noujdina NV, Dinegde KN, Shah Sani SGA, Getahun T, Vance L, Bergmann E, Lindsay D, Mamo BE, Warschefsky EJ, Dacosta-Calheiros E, Marques E, Yilmaz MA, Cakmak A, Rose J, Migneault A, Krieg CP, Saylak S, Temel H, Friesen ML, Siler E, Akhmetov Z, Ozcelik H, Kholova J, Can C, Gaur P, Yildirim M, Sharma H, Vadez V, Tesfaye K, Woldemedhin AF, Tar'an B, Aydogan A, Bukun B, Penmetsa RV, Berger J, Kahraman A, Nuzhdin SV, Cook DR.

Nat Commun. 2018 Feb 13;9(1):649. doi: 10.1038/s41467-018-02867-z.

6.

Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits.

Varshney RK, Saxena RK, Upadhyaya HD, Khan AW, Yu Y, Kim C, Rathore A, Kim D, Kim J, An S, Kumar V, Anuradha G, Yamini KN, Zhang W, Muniswamy S, Kim JS, Penmetsa RV, von Wettberg E, Datta SK.

Nat Genet. 2017 Jul;49(7):1082-1088. doi: 10.1038/ng.3872. Epub 2017 May 22.

PMID:
28530677
7.

Deep Sequencing of the Medicago truncatula Root Transcriptome Reveals a Massive and Early Interaction between Nodulation Factor and Ethylene Signals.

Larrainzar E, Riely BK, Kim SC, Carrasquilla-Garcia N, Yu HJ, Hwang HJ, Oh M, Kim GB, Surendrarao AK, Chasman D, Siahpirani AF, Penmetsa RV, Lee GS, Kim N, Roy S, Mun JH, Cook DR.

Plant Physiol. 2015 Sep;169(1):233-65. doi: 10.1104/pp.15.00350. Epub 2015 Jul 14.

8.

Genetic mapping of legume orthologs reveals high conservation of synteny between lentil species and the sequenced genomes of Medicago and chickpea.

Gujaria-Verma N, Vail SL, Carrasquilla-Garcia N, Penmetsa RV, Cook DR, Farmer AD, Vandenberg A, Bett KE.

Front Plant Sci. 2014 Dec 5;5:676. doi: 10.3389/fpls.2014.00676. eCollection 2014.

9.

Arachis batizocoi: a study of its relationship to cultivated peanut (A. hypogaea) and its potential for introgression of wild genes into the peanut crop using induced allotetraploids.

Leal-Bertioli SC, Santos SP, Dantas KM, Inglis PW, Nielen S, Araujo AC, Silva JP, Cavalcante U, Guimarães PM, Brasileiro AC, Carrasquilla-Garcia N, Penmetsa RV, Cook D, Moretzsohn MC, Bertioli DJ.

Ann Bot. 2015 Feb;115(2):237-49. doi: 10.1093/aob/mcu237. Epub 2014 Dec 22.

10.

Back to the wilds: tapping evolutionary adaptations for resilient crops through systematic hybridization with crop wild relatives.

Warschefsky E, Penmetsa RV, Cook DR, von Wettberg EJ.

Am J Bot. 2014 Oct;101(10):1791-800. doi: 10.3732/ajb.1400116. Epub 2014 Oct 8. Review.

11.

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement.

Varshney RK, Song C, Saxena RK, Azam S, Yu S, Sharpe AG, Cannon S, Baek J, Rosen BD, Tar'an B, Millan T, Zhang X, Ramsay LD, Iwata A, Wang Y, Nelson W, Farmer AD, Gaur PM, Soderlund C, Penmetsa RV, Xu C, Bharti AK, He W, Winter P, Zhao S, Hane JK, Carrasquilla-Garcia N, Condie JA, Upadhyaya HD, Luo MC, Thudi M, Gowda CL, Singh NP, Lichtenzveig J, Gali KK, Rubio J, Nadarajan N, Dolezel J, Bansal KC, Xu X, Edwards D, Zhang G, Kahl G, Gil J, Singh KB, Datta SK, Jackson SA, Wang J, Cook DR.

Nat Biotechnol. 2013 Mar;31(3):240-6. doi: 10.1038/nbt.2491. Epub 2013 Jan 27.

12.

A high-throughput SNP marker system for parental polymorphism screening, and diversity analysis in common bean (Phaseolus vulgaris L.).

Blair MW, Cortés AJ, Penmetsa RV, Farmer A, Carrasquilla-Garcia N, Cook DR.

Theor Appl Genet. 2013 Feb;126(2):535-48. doi: 10.1007/s00122-012-1999-z. Epub 2012 Nov 3.

PMID:
23124389
13.

Large-scale development of cost-effective single-nucleotide polymorphism marker assays for genetic mapping in pigeonpea and comparative mapping in legumes.

Saxena RK, Penmetsa RV, Upadhyaya HD, Kumar A, Carrasquilla-Garcia N, Schlueter JA, Farmer A, Whaley AM, Sarma BK, May GD, Cook DR, Varshney RK.

DNA Res. 2012 Dec;19(6):449-61. doi: 10.1093/dnares/dss025. Epub 2012 Oct 26.

14.

A high-density genetic map of Arachis duranensis, a diploid ancestor of cultivated peanut.

Nagy ED, Guo Y, Tang S, Bowers JE, Okashah RA, Taylor CA, Zhang D, Khanal S, Heesacker AF, Khalilian N, Farmer AD, Carrasquilla-Garcia N, Penmetsa RV, Cook D, Stalker HT, Nielsen N, Ozias-Akins P, Knapp SJ.

BMC Genomics. 2012 Sep 11;13:469. doi: 10.1186/1471-2164-13-469.

15.

Genetic patterns of domestication in pigeonpea (Cajanus cajan (L.) Millsp.) and wild Cajanus relatives.

Kassa MT, Penmetsa RV, Carrasquilla-Garcia N, Sarma BK, Datta S, Upadhyaya HD, Varshney RK, von Wettberg EJ, Cook DR.

PLoS One. 2012;7(6):e39563. doi: 10.1371/journal.pone.0039563. Epub 2012 Jun 22.

16.

Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes.

Hiremath PJ, Kumar A, Penmetsa RV, Farmer A, Schlueter JA, Chamarthi SK, Whaley AM, Carrasquilla-Garcia N, Gaur PM, Upadhyaya HD, Kavi Kishor PB, Shah TM, Cook DR, Varshney RK.

Plant Biotechnol J. 2012 Aug;10(6):716-32. doi: 10.1111/j.1467-7652.2012.00710.x. Epub 2012 Jun 16.

17.

Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.).

Wang H, Penmetsa RV, Yuan M, Gong L, Zhao Y, Guo B, Farmer AD, Rosen BD, Gao J, Isobe S, Bertioli DJ, Varshney RK, Cook DR, He G.

BMC Plant Biol. 2012 Jan 19;12:10. doi: 10.1186/1471-2229-12-10.

18.

Novel SSR markers from BAC-end sequences, DArT arrays and a comprehensive genetic map with 1,291 marker loci for chickpea (Cicer arietinum L.).

Thudi M, Bohra A, Nayak SN, Varghese N, Shah TM, Penmetsa RV, Thirunavukkarasu N, Gudipati S, Gaur PM, Kulwal PL, Upadhyaya HD, Kavikishor PB, Winter P, Kahl G, Town CD, Kilian A, Cook DR, Varshney RK.

PLoS One. 2011;6(11):e27275. doi: 10.1371/journal.pone.0027275. Epub 2011 Nov 15.

19.

Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers.

Varshney RK, Chen W, Li Y, Bharti AK, Saxena RK, Schlueter JA, Donoghue MT, Azam S, Fan G, Whaley AM, Farmer AD, Sheridan J, Iwata A, Tuteja R, Penmetsa RV, Wu W, Upadhyaya HD, Yang SP, Shah T, Saxena KB, Michael T, McCombie WR, Yang B, Zhang G, Yang H, Wang J, Spillane C, Cook DR, May GD, Xu X, Jackson SA.

Nat Biotechnol. 2011 Nov 6;30(1):83-9. doi: 10.1038/nbt.2022.

PMID:
22057054
20.

Medicago truncatula mtpt4 mutants reveal a role for nitrogen in the regulation of arbuscule degeneration in arbuscular mycorrhizal symbiosis.

Javot H, Penmetsa RV, Breuillin F, Bhattarai KK, Noar RD, Gomez SK, Zhang Q, Cook DR, Harrison MJ.

Plant J. 2011 Dec;68(6):954-65. doi: 10.1111/j.1365-313X.2011.04746.x. Epub 2011 Oct 17.

21.

Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.).

Bohra A, Dubey A, Saxena RK, Penmetsa RV, Poornima KN, Kumar N, Farmer AD, Srivani G, Upadhyaya HD, Gothalwal R, Ramesh S, Singh D, Saxena K, Kishor PB, Singh NK, Town CD, May GD, Cook DR, Varshney RK.

BMC Plant Biol. 2011 Mar 29;11:56. doi: 10.1186/1471-2229-11-56.

22.

Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.).

Varshney RK, Penmetsa RV, Dutta S, Kulwal PL, Saxena RK, Datta S, Sharma TR, Rosen B, Carrasquilla-Garcia N, Farmer AD, Dubey A, Saxena KB, Gao J, Fakrudin B, Singh MN, Singh BP, Wanjari KB, Yuan M, Srivastava RK, Kilian A, Upadhyaya HD, Mallikarjuna N, Town CD, Bruening GE, He G, May GD, McCombie R, Jackson SA, Singh NK, Cook DR.

Mol Breed. 2010 Oct;26(3):393-408. Epub 2009 Sep 17.

23.

Population genomic analysis of Tunisian Medicago truncatula reveals candidates for local adaptation.

Friesen ML, Cordeiro MA, Penmetsa RV, Badri M, Huguet T, Aouani ME, Cook DR, Nuzhdin SV.

Plant J. 2010 Aug;63(4):623-35. doi: 10.1111/j.1365-313X.2010.04267.x.

24.

Analysis of B function in legumes: PISTILLATA proteins do not require the PI motif for floral organ development in Medicago truncatula.

Benlloch R, Roque E, Ferrándiz C, Cosson V, Caballero T, Penmetsa RV, Beltrán JP, Cañas LA, Ratet P, Madueño F.

Plant J. 2009 Oct;60(1):102-11. doi: 10.1111/j.1365-313X.2009.03939.x. Epub 2009 May 28.

25.

The Medicago truncatula ortholog of Arabidopsis EIN2, sickle, is a negative regulator of symbiotic and pathogenic microbial associations.

Penmetsa RV, Uribe P, Anderson J, Lichtenzveig J, Gish JC, Nam YW, Engstrom E, Xu K, Sckisel G, Pereira M, Baek JM, Lopez-Meyer M, Long SR, Harrison MJ, Singh KB, Kiss GB, Cook DR.

Plant J. 2008 Aug;55(4):580-95. doi: 10.1111/j.1365-313X.2008.03531.x. Epub 2008 Apr 24.

26.

An ERF transcription factor in Medicago truncatula that is essential for Nod factor signal transduction.

Middleton PH, Jakab J, Penmetsa RV, Starker CG, Doll J, Kaló P, Prabhu R, Marsh JF, Mitra RM, Kereszt A, Dudas B, VandenBosch K, Long SR, Cook DR, Kiss GB, Oldroyd GE.

Plant Cell. 2007 Apr;19(4):1221-34. Epub 2007 Apr 20.

27.

A Medicago truncatula phosphate transporter indispensable for the arbuscular mycorrhizal symbiosis.

Javot H, Penmetsa RV, Terzaghi N, Cook DR, Harrison MJ.

Proc Natl Acad Sci U S A. 2007 Jan 30;104(5):1720-5. Epub 2007 Jan 22.

28.

LIN, a Medicago truncatula gene required for nodule differentiation and persistence of rhizobial infections.

Kuppusamy KT, Endre G, Prabhu R, Penmetsa RV, Veereshlingam H, Cook DR, Dickstein R, Vandenbosch KA.

Plant Physiol. 2004 Nov;136(3):3682-91. Epub 2004 Oct 29.

29.

nip, a symbiotic Medicago truncatula mutant that forms root nodules with aberrant infection threads and plant defense-like response.

Veereshlingam H, Haynes JG, Penmetsa RV, Cook DR, Sherrier DJ, Dickstein R.

Plant Physiol. 2004 Nov;136(3):3692-702. Epub 2004 Oct 29.

30.

Genetic and genomic analysis in model legumes bring Nod-factor signaling to center stage.

Riely BK, Ané JM, Penmetsa RV, Cook DR.

Curr Opin Plant Biol. 2004 Aug;7(4):408-13. Review.

PMID:
15231263
31.

A sequence-based genetic map of Medicago truncatula and comparison of marker colinearity with M. sativa.

Choi HK, Kim D, Uhm T, Limpens E, Lim H, Mun JH, Kalo P, Penmetsa RV, Seres A, Kulikova O, Roe BA, Bisseling T, Kiss GB, Cook DR.

Genetics. 2004 Mar;166(3):1463-502.

32.

Medicago truncatula DMI1 required for bacterial and fungal symbioses in legumes.

Ané JM, Kiss GB, Riely BK, Penmetsa RV, Oldroyd GE, Ayax C, Lévy J, Debellé F, Baek JM, Kalo P, Rosenberg C, Roe BA, Long SR, Dénarié J, Cook DR.

Science. 2004 Feb 27;303(5662):1364-7. Epub 2004 Feb 12.

33.

An integrated physical, genetic and cytogenetic map around the sunn locus of Medicago truncatula.

Schnabel E, Kulikova O, Penmetsa RV, Bisseling T, Cook DR, Frugoli J.

Genome. 2003 Aug;46(4):665-72.

PMID:
12897874
34.

The NFP locus of Medicago truncatula controls an early step of Nod factor signal transduction upstream of a rapid calcium flux and root hair deformation.

Amor BB, Shaw SL, Oldroyd GE, Maillet F, Penmetsa RV, Cook D, Long SR, Dénarié J, Gough C.

Plant J. 2003 May;34(4):495-506. Erratum in: Plant J. 2003 Jul;35(1):140.

35.

Dual genetic pathways controlling nodule number in Medicago truncatula.

Penmetsa RV, Frugoli JA, Smith LS, Long SR, Cook DR.

Plant Physiol. 2003 Mar;131(3):998-1008.

36.

Differential regulation of a family of apyrase genes from Medicago truncatula.

Cohn JR, Uhm T, Ramu S, Nam YW, Kim DJ, Penmetsa RV, Wood TC, Denny RL, Young ND, Cook DR, Stacey G.

Plant Physiol. 2001 Apr;125(4):2104-19.

37.

The HCL gene of Medicago truncatula controls Rhizobium-induced root hair curling.

Catoira R, Timmers AC, Maillet F, Galera C, Penmetsa RV, Cook D, Dénarié J, Gough C.

Development. 2001 May;128(9):1507-18.

38.

Genetic analysis of calcium spiking responses in nodulation mutants of Medicago truncatula.

Wais RJ, Galera C, Oldroyd G, Catoira R, Penmetsa RV, Cook D, Gough C, Denarié J, Long SR.

Proc Natl Acad Sci U S A. 2000 Nov 21;97(24):13407-12.

39.

Four genes of Medicago truncatula controlling components of a nod factor transduction pathway.

Catoira R, Galera C, de Billy F, Penmetsa RV, Journet EP, Maillet F, Rosenberg C, Cook D, Gough C, Dénarié J.

Plant Cell. 2000 Sep;12(9):1647-66.

40.
41.

A Legume Ethylene-Insensitive Mutant Hyperinfected by Its Rhizobial Symbiont

Penmetsa RV, Cook DR.

Science. 1997 Jan 24;275(5299):527-30.

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